From f7bb1e78587b932e421aaa6c5f20fec0ee747ea5 Mon Sep 17 00:00:00 2001 From: araison Date: Mon, 9 Jan 2023 23:51:10 +0100 Subject: [PATCH] Fixing --- explaining_framework/utils/config_gen.py | 204 +++++++++--------- .../utils/explaining/outline.py | 27 +-- explaining_framework/utils/io.py | 2 +- 3 files changed, 116 insertions(+), 117 deletions(-) diff --git a/explaining_framework/utils/config_gen.py b/explaining_framework/utils/config_gen.py index ddf4fd0..b9a6939 100644 --- a/explaining_framework/utils/config_gen.py +++ b/explaining_framework/utils/config_gen.py @@ -4,14 +4,12 @@ import shutil from explaining_framework.utils.io import read_yaml, write_yaml from torch_geometric.data.makedirs import makedirs - -# from torch_geometric.graphgym.loader import load_pyg_dataset - +from torch_geometric.graphgym.loader import create_dataset +from torch_geometric.graphgym.utils.io import string_to_python def chunkizing_list(l, n): - for i in range(0, len(l), n): - yield l[i : i + n] + return [l[i : i + n] for i in range(0, len(l), n)] if "__main__" == __name__: @@ -23,60 +21,61 @@ if "__main__" == __name__: makedirs(explaining_folder) explainer_folder = os.path.join(config_folder, "explaining") makedirs(explainer_folder) + chunk = list(range(154, 160, 2)) DATASET = [ "CIFAR10", - "TRIANGLES", - "COLORS-3", - "REDDIT-BINARY", - "REDDIT-MULTI-5K", - "REDDIT-MULTI-12K", - "COLLAB", - "DBLP_v1", - "COIL-DEL", - "COIL-RAG", - "Fingerprint", - "Letter-high", - "Letter-low", - "Letter-med", - "MSRC_9", - "MSRC_21", - "MSRC_21C", - "DD", - "ENZYMES", - "PROTEINS", - "QM9", - "MUTAG", - "Mutagenicity", - "AIDS", - "PATTERN", - "CLUSTER", - "MNIST", - "CIFAR10", - "TSP", - "CSL", - "KarateClub", - "CS", - "Physics", - "BBBP", - "Tox21", - "HIV", - "PCBA", - "MUV", - "BACE", - "SIDER", - "ClinTox", - "AIFB", - "AM", - "MUTAG", - "BGS", - "FAUST", - "DynamicFAUST", - "ShapeNet", - "ModelNet10", - "ModelNet40", - "PascalVOC-SP", - "COCO-SP", + # "TRIANGLES", + # "COLORS-3", + # "REDDIT-BINARY", + # "REDDIT-MULTI-5K", + # "REDDIT-MULTI-12K", + # "COLLAB", + # "DBLP_v1", + # "COIL-DEL", + # "COIL-RAG", + # "Fingerprint", + # "Letter-high", + # "Letter-low", + # "Letter-med", + # "MSRC_9", + # "MSRC_21", + # "MSRC_21C", + # "DD", + # "ENZYMES", + # "PROTEINS", + # "QM9", + # "MUTAG", + # "Mutagenicity", + # "AIDS", + # "PATTERN", + # "CLUSTER", + # "MNIST", + # "CIFAR10", + # "TSP", + # "CSL", + # "KarateClub", + # "CS", + # "Physics", + # "BBBP", + # "Tox21", + # "HIV", + # "PCBA", + # "MUV", + # "BACE", + # "SIDER", + # "ClinTox", + # "AIFB", + # "AM", + # "MUTAG", + # "BGS", + # "FAUST", + # "DynamicFAUST", + # "ShapeNet", + # "ModelNet10", + # "ModelNet40", + # "PascalVOC-SP", + # "COCO-SP", ] EXPLAINER = [ "CAM", @@ -95,57 +94,56 @@ if "__main__" == __name__: "SCGNN", ] - # for dataset_name in DATASET: - # try: - # dataset = load_pyg_dataset(name=dataset_name, dataset_dir="/tmp/") - # except Exception as e: - # print(e) - # continue - # for chunk in chunkizing_list(list(range(len(dataset))), 1000): - # for model_kind in ["best", "worst"]: - # for explainer_name in EXPLAINER: - # explaining_cfg = {} - # # explaining_cfg['adjust']['strategy']= 'rpns' - # # explaining_cfg['attack']['name']= 'all' - # explaining_cfg[ - # "cfg_dest" - # ] = f"dataset={dataset_name}-model={model_kind}=explainer={explainer_name}-chunk=[{chunk[0]},{chunk[-1]}]" - # explaining_cfg["dataset"] = {} - # explaining_cfg["dataset"]["name"] = dataset_name - # explaining_cfg["dataset"]["item"] = chunk - # # explaining_cfg['explainer']['cfg']= 'default' - # explaining_cfg["explainer"] = {} - # explaining_cfg["explainer"]["name"] = explainer_name - # explaining_cfg["explanation_type"] = "phenomenon" - # # explaining_cfg['metrics']['accuracy']['name']='all' - # # explaining_cfg['metrics']['fidelity']['name']='all' - # # explaining_cfg['metrics']['sparsity']['name']='all' - # explaining_cfg["model"] = {} - # explaining_cfg["model"]["ckpt"] = model_kind - # explaining_cfg["model"][ - # "path" - # ] = "/home/SIC/araison/test_ggym/pytorch_geometric/graphgym/results" - # # explaining_cfg['out_dir']='./explanation' - # # explaining_cfg['print']='both' - # # explaining_cfg['threshold']['config']['type']='all' - # # explaining_cfg['threshold']['value']['hard']=[0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9] - # # explaining_cfg['threshold']['value']['topk']=[2, 3, 5, 10, 20, 30, 50] - # PATH = os.path.join( - # explaining_folder + "/" + explaining_cfg["cfg_dest"] + ".yaml", - # ) + for dataset_name in DATASET: + for model_kind in ["best", "worst"]: + for explainer_name in EXPLAINER: + explaining_cfg = {} + # explaining_cfg['adjust']['strategy']= 'rpns' + # explaining_cfg['attack']['name']= 'all' + explaining_cfg[ + "cfg_dest" + ] = f"dataset={dataset_name}-model={model_kind}=explainer={explainer_name}-chunk=[{chunk[0]},{chunk[-1]}]" + + # = string_to_python( + # f"dataset={dataset_name}-model={model_kind}=explainer={explainer_name}" + explaining_cfg["dataset"] = {} + explaining_cfg["dataset"]["name"] = string_to_python(dataset_name) + explaining_cfg["dataset"]["item"] = chunk + # explaining_cfg['explainer']['cfg']= 'default' + explaining_cfg["explainer"] = {} + explaining_cfg["explainer"]["name"] = string_to_python(explainer_name) + explaining_cfg["explainer"]["force"] = True + explaining_cfg["explanation_type"] = string_to_python("phenomenon") + # explaining_cfg['metrics']['accuracy']['name']='all' + # explaining_cfg['metrics']['fidelity']['name']='all' + # explaining_cfg['metrics']['sparsity']['name']='all' + explaining_cfg["model"] = {} + explaining_cfg["model"]["ckpt"] = string_to_python(model_kind) + explaining_cfg["model"]["path"] = string_to_python( + "/home/SIC/araison/test_ggym/pytorch_geometric/graphgym/results" + ) + # explaining_cfg['out_dir']='./explanation' + # explaining_cfg['print']='both' + # explaining_cfg['threshold']['config']['type']='all' + # explaining_cfg['threshold']['value']['hard']=[0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, 0.9] + # explaining_cfg['threshold']['value']['topk']=[2, 3, 5, 10, 20, 30, 50] + PATH = os.path.join( + explaining_folder + "/" + explaining_cfg["cfg_dest"] + ".yaml", + ) + write_yaml(explaining_cfg, PATH) # if os.path.exists(PATH): # continue # else: # write_yaml(explaining_cfg, PATH) - configs = [ - path for path in glob.glob(os.path.join(explaining_folder, "**", "*.yaml")) - ] - for path in configs: - data = read_yaml(path) - data["model"][ - "path" - ] = "/media/data/SIC/araison/exps/pyg_fork/graphgym/results/graph_classif_base_grid_graph_classif_grid" - write_yaml(data, path) + # configs = [ + # path for path in glob.glob(os.path.join(explaining_folder, "**", "*.yaml")) + # ] + # for path in configs: + # data = read_yaml(path) + # data["model"][ + # "path" + # ] = "/media/data/SIC/araison/exps/pyg_fork/graphgym/results/graph_classif_base_grid_graph_classif_grid" + # write_yaml(data, path) # for index, config_chunk in enumerate( # chunkizing_list(configs, int(len(configs) / 5)) diff --git a/explaining_framework/utils/explaining/outline.py b/explaining_framework/utils/explaining/outline.py index f5af4c4..967c524 100644 --- a/explaining_framework/utils/explaining/outline.py +++ b/explaining_framework/utils/explaining/outline.py @@ -6,6 +6,20 @@ import os from typing import Any from eixgnn.eixgnn import EiXGNN +from scgnn.scgnn import SCGNN +from torch_geometric import seed_everything +from torch_geometric.data import Batch, Data +from torch_geometric.data.makedirs import makedirs +from torch_geometric.explain import Explainer +from torch_geometric.explain.config import ThresholdConfig +from torch_geometric.explain.explanation import Explanation +from torch_geometric.graphgym.config import cfg +from torch_geometric.graphgym.loader import create_dataset +from torch_geometric.graphgym.model_builder import cfg, create_model +from torch_geometric.graphgym.utils.device import auto_select_device +from torch_geometric.loader.dataloader import DataLoader +from yacs.config import CfgNode as CN + from explaining_framework.config.explainer_config.eixgnn_config import \ eixgnn_cfg from explaining_framework.config.explainer_config.scgnn_config import scgnn_cfg @@ -31,19 +45,6 @@ from explaining_framework.utils.io import (dump_cfg, is_exists, obj_config_to_str, read_json, set_printing, write_json, write_yaml) -from scgnn.scgnn import SCGNN -from torch_geometric import seed_everything -from torch_geometric.data import Batch, Data -from torch_geometric.data.makedirs import makedirs -from torch_geometric.explain import Explainer -from torch_geometric.explain.config import ThresholdConfig -from torch_geometric.explain.explanation import Explanation -from torch_geometric.graphgym.config import cfg -from torch_geometric.graphgym.loader import create_dataset -from torch_geometric.graphgym.model_builder import cfg, create_model -from torch_geometric.graphgym.utils.device import auto_select_device -from torch_geometric.loader.dataloader import DataLoader -from yacs.config import CfgNode as CN all__captum = [ "LRP", diff --git a/explaining_framework/utils/io.py b/explaining_framework/utils/io.py index 5ffbecd..5356bf7 100644 --- a/explaining_framework/utils/io.py +++ b/explaining_framework/utils/io.py @@ -26,7 +26,7 @@ def read_yaml(path: str) -> dict: def write_yaml(data: dict, path: str) -> None: with open(path, "w") as f: - data = yaml.dump(data, f) + data = yaml.safe_dump(data, f, default_flow_style=False) def dump_cfg(cfg, path):