Initial commit

.coveragerc

@@ -0,0 +1,28 @@
+# .coveragerc to control coverage.py
+[run]
+branch = True
+source = zotero_joplin_binder
+# omit = bad_file.py
+
+[paths]
+source =
+    src/
+    */site-packages/
+
+[report]
+# Regexes for lines to exclude from consideration
+exclude_lines =
+    # Have to re-enable the standard pragma
+    pragma: no cover
+
+    # Don't complain about missing debug-only code:
+    def __repr__
+    if self\.debug
+
+    # Don't complain if tests don't hit defensive assertion code:
+    raise AssertionError
+    raise NotImplementedError
+
+    # Don't complain if non-runnable code isn't run:
+    if 0:
+    if __name__ == .__main__.:

.gitignore

@@ -0,0 +1,51 @@
+# Temporary and binary files
+*~
+*.py[cod]
+*.so
+*.cfg
+!.isort.cfg
+!setup.cfg
+*.orig
+*.log
+*.pot
+__pycache__/*
+.cache/*
+.*.swp
+*/.ipynb_checkpoints/*
+.DS_Store
+
+# Project files
+.ropeproject
+.project
+.pydevproject
+.settings
+.idea
+.vscode
+tags
+
+# Package files
+*.egg
+*.eggs/
+.installed.cfg
+*.egg-info
+
+# Unittest and coverage
+htmlcov/*
+.coverage
+.tox
+junit.xml
+coverage.xml
+.pytest_cache/
+
+# Build and docs folder/files
+build/*
+dist/*
+sdist/*
+docs/api/*
+docs/_rst/*
+docs/_build/*
+cover/*
+MANIFEST
+
+# Per-project virtualenvs
+.venv*/

AUTHORS.rst

@@ -0,0 +1,5 @@
+============
+Contributors
+============
+
+* Adrien Raison <adrien.raison@univ-poitiers.fr>

CHANGELOG.rst

@@ -0,0 +1,10 @@
+=========
+Changelog
+=========
+
+Version 0.1
+===========
+
+- Feature A added
+- FIX: nasty bug #1729 fixed
+- add your changes here!

LICENSE.txt

@@ -0,0 +1,21 @@
+The MIT License (MIT)
+
+Copyright (c) 2021 Adrien Raison
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

README.rst

@@ -0,0 +1,19 @@
+====================
+zotero_joplin_binder
+====================
+
+
+Add a short description here!
+
+
+Description
+===========
+
+A longer description of your project goes here...
+
+
+Note
+====
+
+This project has been set up using PyScaffold 3.3.1. For details and usage
+information on PyScaffold see https://pyscaffold.org/.

docs/Makefile

@@ -0,0 +1,29 @@
+# Makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+AUTODOCDIR    = api
+
+# User-friendly check for sphinx-build
+ifeq ($(shell which $(SPHINXBUILD) >/dev/null 2>&1; echo $?), 1)
+$(error "The '$(SPHINXBUILD)' command was not found. Make sure you have Sphinx installed, then set the SPHINXBUILD environment variable to point to the full path of the '$(SPHINXBUILD)' executable. Alternatively you can add the directory with the executable to your PATH. If you don't have Sphinx installed, grab it from http://sphinx-doc.org/")
+endif
+
+.PHONY: help clean Makefile
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+clean:
+	rm -rf $(BUILDDIR)/* $(AUTODOCDIR)
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)

docs/_static/.gitignore

@@ -0,0 +1 @@
+# Empty directory

docs/authors.rst

@@ -0,0 +1,2 @@
+.. _authors:
+.. include:: ../AUTHORS.rst

docs/changelog.rst

@@ -0,0 +1,2 @@
+.. _changes:
+.. include:: ../CHANGELOG.rst

docs/conf.py

@@ -0,0 +1,279 @@
+# This file is execfile()d with the current directory set to its containing dir.
+#
+# This file only contains a selection of the most common options. For a full
+# list see the documentation:
+# https://www.sphinx-doc.org/en/master/usage/configuration.html
+#
+# All configuration values have a default; values that are commented out
+# serve to show the default.
+
+import os
+import sys
+import inspect
+import shutil
+
+# -- Path setup --------------------------------------------------------------
+
+__location__ = os.path.join(
+    os.getcwd(), os.path.dirname(inspect.getfile(inspect.currentframe()))
+)
+
+# If extensions (or modules to document with autodoc) are in another directory,
+# add these directories to sys.path here. If the directory is relative to the
+# documentation root, use os.path.abspath to make it absolute, like shown here.
+sys.path.insert(0, os.path.join(__location__, "../src"))
+
+# -- Run sphinx-apidoc -------------------------------------------------------
+# This hack is necessary since RTD does not issue `sphinx-apidoc` before running
+# `sphinx-build -b html . _build/html`. See Issue:
+# https://github.com/rtfd/readthedocs.org/issues/1139
+# DON'T FORGET: Check the box "Install your project inside a virtualenv using
+# setup.py install" in the RTD Advanced Settings.
+# Additionally it helps us to avoid running apidoc manually
+
+try:  # for Sphinx >= 1.7
+    from sphinx.ext import apidoc
+except ImportError:
+    from sphinx import apidoc
+
+output_dir = os.path.join(__location__, "api")
+module_dir = os.path.join(__location__, "../src/zotero_joplin_binder")
+try:
+    shutil.rmtree(output_dir)
+except FileNotFoundError:
+    pass
+
+try:
+    import sphinx
+    from pkg_resources import parse_version
+
+    cmd_line_template = "sphinx-apidoc -f -o {outputdir} {moduledir}"
+    cmd_line = cmd_line_template.format(outputdir=output_dir, moduledir=module_dir)
+
+    args = cmd_line.split(" ")
+    if parse_version(sphinx.__version__) >= parse_version("1.7"):
+        args = args[1:]
+
+    apidoc.main(args)
+except Exception as e:
+    print("Running `sphinx-apidoc` failed!\n{}".format(e))
+
+# -- General configuration ---------------------------------------------------
+
+# If your documentation needs a minimal Sphinx version, state it here.
+# needs_sphinx = '1.0'
+
+# Add any Sphinx extension module names here, as strings. They can be extensions
+# coming with Sphinx (named 'sphinx.ext.*') or your custom ones.
+extensions = [
+    "sphinx.ext.autodoc",
+    "sphinx.ext.intersphinx",
+    "sphinx.ext.todo",
+    "sphinx.ext.autosummary",
+    "sphinx.ext.viewcode",
+    "sphinx.ext.coverage",
+    "sphinx.ext.doctest",
+    "sphinx.ext.ifconfig",
+    "sphinx.ext.mathjax",
+    "sphinx.ext.napoleon",
+]
+
+# Add any paths that contain templates here, relative to this directory.
+templates_path = ["_templates"]
+
+# The suffix of source filenames.
+source_suffix = ".rst"
+
+# The encoding of source files.
+# source_encoding = 'utf-8-sig'
+
+# The master toctree document.
+master_doc = "index"
+
+# General information about the project.
+project = "zotero_joplin_binder"
+copyright = "2021, Adrien Raison"
+
+# The version info for the project you're documenting, acts as replacement for
+# |version| and |release|, also used in various other places throughout the
+# built documents.
+#
+# The short X.Y version.
+version = ""  # Is set by calling `setup.py docs`
+# The full version, including alpha/beta/rc tags.
+release = ""  # Is set by calling `setup.py docs`
+
+# The language for content autogenerated by Sphinx. Refer to documentation
+# for a list of supported languages.
+# language = None
+
+# There are two options for replacing |today|: either, you set today to some
+# non-false value, then it is used:
+# today = ''
+# Else, today_fmt is used as the format for a strftime call.
+# today_fmt = '%B %d, %Y'
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
+
+# The reST default role (used for this markup: `text`) to use for all documents.
+# default_role = None
+
+# If true, '()' will be appended to :func: etc. cross-reference text.
+# add_function_parentheses = True
+
+# If true, the current module name will be prepended to all description
+# unit titles (such as .. function::).
+# add_module_names = True
+
+# If true, sectionauthor and moduleauthor directives will be shown in the
+# output. They are ignored by default.
+# show_authors = False
+
+# The name of the Pygments (syntax highlighting) style to use.
+pygments_style = "sphinx"
+
+# A list of ignored prefixes for module index sorting.
+# modindex_common_prefix = []
+
+# If true, keep warnings as "system message" paragraphs in the built documents.
+# keep_warnings = False
+
+
+# -- Options for HTML output -------------------------------------------------
+
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+html_theme = "alabaster"
+
+# Theme options are theme-specific and customize the look and feel of a theme
+# further.  For a list of options available for each theme, see the
+# documentation.
+html_theme_options = {
+    "sidebar_width": "300px",
+    "page_width": "1200px"
+}
+
+# Add any paths that contain custom themes here, relative to this directory.
+# html_theme_path = []
+
+# The name for this set of Sphinx documents.  If None, it defaults to
+# "<project> v<release> documentation".
+try:
+    from zotero_joplin_binder import __version__ as version
+except ImportError:
+    pass
+else:
+    release = version
+
+# A shorter title for the navigation bar.  Default is the same as html_title.
+# html_short_title = None
+
+# The name of an image file (relative to this directory) to place at the top
+# of the sidebar.
+# html_logo = ""
+
+# The name of an image file (within the static path) to use as favicon of the
+# docs.  This file should be a Windows icon file (.ico) being 16x16 or 32x32
+# pixels large.
+# html_favicon = None
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+html_static_path = ["_static"]
+
+# If not '', a 'Last updated on:' timestamp is inserted at every page bottom,
+# using the given strftime format.
+# html_last_updated_fmt = '%b %d, %Y'
+
+# If true, SmartyPants will be used to convert quotes and dashes to
+# typographically correct entities.
+# html_use_smartypants = True
+
+# Custom sidebar templates, maps document names to template names.
+# html_sidebars = {}
+
+# Additional templates that should be rendered to pages, maps page names to
+# template names.
+# html_additional_pages = {}
+
+# If false, no module index is generated.
+# html_domain_indices = True
+
+# If false, no index is generated.
+# html_use_index = True
+
+# If true, the index is split into individual pages for each letter.
+# html_split_index = False
+
+# If true, links to the reST sources are added to the pages.
+# html_show_sourcelink = True
+
+# If true, "Created using Sphinx" is shown in the HTML footer. Default is True.
+# html_show_sphinx = True
+
+# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True.
+# html_show_copyright = True
+
+# If true, an OpenSearch description file will be output, and all pages will
+# contain a <link> tag referring to it.  The value of this option must be the
+# base URL from which the finished HTML is served.
+# html_use_opensearch = ''
+
+# This is the file name suffix for HTML files (e.g. ".xhtml").
+# html_file_suffix = None
+
+# Output file base name for HTML help builder.
+htmlhelp_basename = "zotero_joplin_binder-doc"
+
+
+# -- Options for LaTeX output ------------------------------------------------
+
+latex_elements = {
+    # The paper size ("letterpaper" or "a4paper").
+    # "papersize": "letterpaper",
+    # The font size ("10pt", "11pt" or "12pt").
+    # "pointsize": "10pt",
+    # Additional stuff for the LaTeX preamble.
+    # "preamble": "",
+}
+
+# Grouping the document tree into LaTeX files. List of tuples
+# (source start file, target name, title, author, documentclass [howto/manual]).
+latex_documents = [
+    ("index", "user_guide.tex", "zotero_joplin_binder Documentation", "Adrien Raison", "manual")
+]
+
+# The name of an image file (relative to this directory) to place at the top of
+# the title page.
+# latex_logo = ""
+
+# For "manual" documents, if this is true, then toplevel headings are parts,
+# not chapters.
+# latex_use_parts = False
+
+# If true, show page references after internal links.
+# latex_show_pagerefs = False
+
+# If true, show URL addresses after external links.
+# latex_show_urls = False
+
+# Documents to append as an appendix to all manuals.
+# latex_appendices = []
+
+# If false, no module index is generated.
+# latex_domain_indices = True
+
+# -- External mapping --------------------------------------------------------
+python_version = ".".join(map(str, sys.version_info[0:2]))
+intersphinx_mapping = {
+    "sphinx": ("http://www.sphinx-doc.org/en/stable", None),
+    "python": ("https://docs.python.org/" + python_version, None),
+    "matplotlib": ("https://matplotlib.org", None),
+    "numpy": ("https://docs.scipy.org/doc/numpy", None),
+    "sklearn": ("https://scikit-learn.org/stable", None),
+    "pandas": ("https://pandas.pydata.org/pandas-docs/stable", None),
+    "scipy": ("https://docs.scipy.org/doc/scipy/reference", None),
+}

docs/index.rst

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+====================
+zotero_joplin_binder
+====================
+
+This is the documentation of **zotero_joplin_binder**.
+
+.. note::
+
+    This is the main page of your project's `Sphinx`_ documentation.
+    It is formatted in `reStructuredText`_. Add additional pages
+    by creating rst-files in ``docs`` and adding them to the `toctree`_ below.
+    Use then `references`_ in order to link them from this page, e.g.
+    :ref:`authors` and :ref:`changes`.
+
+    It is also possible to refer to the documentation of other Python packages
+    with the `Python domain syntax`_. By default you can reference the
+    documentation of `Sphinx`_, `Python`_, `NumPy`_, `SciPy`_, `matplotlib`_,
+    `Pandas`_, `Scikit-Learn`_. You can add more by extending the
+    ``intersphinx_mapping`` in your Sphinx's ``conf.py``.
+
+    The pretty useful extension `autodoc`_ is activated by default and lets
+    you include documentation from docstrings. Docstrings can be written in
+    `Google style`_ (recommended!), `NumPy style`_ and `classical style`_.
+
+
+Contents
+========
+
+.. toctree::
+   :maxdepth: 2
+
+   License <license>
+   Authors <authors>
+   Changelog <changelog>
+   Module Reference <api/modules>
+
+
+Indices and tables
+==================
+
+* :ref:`genindex`
+* :ref:`modindex`
+* :ref:`search`
+
+.. _toctree: http://www.sphinx-doc.org/en/master/usage/restructuredtext/directives.html
+.. _reStructuredText: http://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html
+.. _references: http://www.sphinx-doc.org/en/stable/markup/inline.html
+.. _Python domain syntax: http://sphinx-doc.org/domains.html#the-python-domain
+.. _Sphinx: http://www.sphinx-doc.org/
+.. _Python: http://docs.python.org/
+.. _Numpy: http://docs.scipy.org/doc/numpy
+.. _SciPy: http://docs.scipy.org/doc/scipy/reference/
+.. _matplotlib: https://matplotlib.org/contents.html#
+.. _Pandas: http://pandas.pydata.org/pandas-docs/stable
+.. _Scikit-Learn: http://scikit-learn.org/stable
+.. _autodoc: http://www.sphinx-doc.org/en/stable/ext/autodoc.html
+.. _Google style: https://github.com/google/styleguide/blob/gh-pages/pyguide.md#38-comments-and-docstrings
+.. _NumPy style: https://numpydoc.readthedocs.io/en/latest/format.html
+.. _classical style: http://www.sphinx-doc.org/en/stable/domains.html#info-field-lists

docs/license.rst

@@ -0,0 +1,7 @@
+.. _license:
+
+=======
+License
+=======
+
+.. include:: ../LICENSE.txt

requirements.txt

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+# =============================================================================
+# DEPRECATION WARNING:
+#
+# The file `requirements.txt` does not influence the package dependencies and
+# will not be automatically created in the next version of PyScaffold (v4.x).
+#
+# Please have look at the docs for better alternatives
+# (`Dependency Management` section).
+# =============================================================================
+#
+# Add your pinned requirements so that they can be easily installed with:
+# pip install -r requirements.txt
+# Remember to also add them in setup.cfg but unpinned.
+# Example:
+# numpy==1.13.3
+# scipy==1.0
+#

setup.cfg

@@ -0,0 +1,122 @@
+# This file is used to configure your project.
+# Read more about the various options under:
+# http://setuptools.readthedocs.io/en/latest/setuptools.html#configuring-setup-using-setup-cfg-files
+
+[metadata]
+name = zotero_joplin_binder
+description = Add a short description here!
+author = Adrien Raison
+author-email = adrien.raison@univ-poitiers.fr
+license = mit
+long-description = file: README.rst
+long-description-content-type = text/x-rst; charset=UTF-8
+url = https://github.com/pyscaffold/pyscaffold/
+project-urls =
+    Documentation = https://pyscaffold.org/
+# Change if running only on Windows, Mac or Linux (comma-separated)
+platforms = any
+# Add here all kinds of additional classifiers as defined under
+# https://pypi.python.org/pypi?%3Aaction=list_classifiers
+classifiers =
+    Development Status :: 4 - Beta
+    Programming Language :: Python
+
+[options]
+zip_safe = False
+packages = find:
+include_package_data = True
+package_dir =
+    =src
+# DON'T CHANGE THE FOLLOWING LINE! IT WILL BE UPDATED BY PYSCAFFOLD!
+setup_requires = pyscaffold>=3.3a0,<4
+# Add here dependencies of your project (semicolon/line-separated), e.g.
+# install_requires = numpy; scipy
+# The usage of test_requires is discouraged, see `Dependency Management` docs
+# tests_require = pytest; pytest-cov
+# Require a specific Python version, e.g. Python 2.7 or >= 3.4
+# python_requires = >=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*
+
+[options.packages.find]
+where = src
+exclude =
+    tests
+
+[options.extras_require]
+# Add here additional requirements for extra features, to install with:
+# `pip install zotero_joplin_binder[PDF]` like:
+# PDF = ReportLab; RXP
+# Add here test requirements (semicolon/line-separated)
+testing =
+    pytest
+    pytest-cov
+
+[options.entry_points]
+# Add here console scripts like:
+# console_scripts =
+#     script_name = zotero_joplin_binder.module:function
+# For example:
+# console_scripts =
+#     fibonacci = zotero_joplin_binder.skeleton:run
+# And any other entry points, for example:
+# pyscaffold.cli =
+#     awesome = pyscaffoldext.awesome.extension:AwesomeExtension
+
+[test]
+# py.test options when running `python setup.py test`
+# addopts = --verbose
+extras = True
+
+[tool:pytest]
+# Options for py.test:
+# Specify command line options as you would do when invoking py.test directly.
+# e.g. --cov-report html (or xml) for html/xml output or --junitxml junit.xml
+# in order to write a coverage file that can be read by Jenkins.
+addopts =
+    --cov zotero_joplin_binder --cov-report term-missing
+    --verbose
+norecursedirs =
+    dist
+    build
+    .tox
+testpaths = tests
+# Use pytest markers to select/deselect specific tests
+# markers =
+#     slow: mark tests as slow (deselect with '-m "not slow"')
+
+[aliases]
+dists = bdist_wheel
+
+[bdist_wheel]
+# Use this option if your package is pure-python
+universal = 1
+
+[build_sphinx]
+source_dir = docs
+build_dir = build/sphinx
+
+[devpi:upload]
+# Options for the devpi: PyPI server and packaging tool
+# VCS export must be deactivated since we are using setuptools-scm
+no-vcs = 1
+formats = bdist_wheel
+
+[flake8]
+# Some sane defaults for the code style checker flake8
+max-line-length = 88
+extend-ignore = E203, W503
+# ^  Black-compatible
+#    E203 and W503 have edge cases handled by black
+exclude =
+    .tox
+    build
+    dist
+    .eggs
+    docs/conf.py
+
+[pyscaffold]
+# PyScaffold's parameters when the project was created.
+# This will be used when updating. Do not change!
+version = 3.3.1
+package = zotero_joplin_binder
+extensions =
+    no_skeleton

setup.py

@@ -0,0 +1,22 @@
+# -*- coding: utf-8 -*-
+"""
+    Setup file for zotero_joplin_binder.
+    Use setup.cfg to configure your project.
+
+    This file was generated with PyScaffold 3.3.1.
+    PyScaffold helps you to put up the scaffold of your new Python project.
+    Learn more under: https://pyscaffold.org/
+"""
+import sys
+from pkg_resources import VersionConflict, require
+from setuptools import setup
+
+try:
+    require("setuptools>=38.3")
+except VersionConflict:
+    print("Error: version of setuptools is too old (<38.3)!")
+    sys.exit(1)
+
+
+if __name__ == "__main__":
+    setup(use_pyscaffold=True)

src/zotero_joplin_binder/__init__.py

@@ -0,0 +1,11 @@
+# -*- coding: utf-8 -*-
+from pkg_resources import DistributionNotFound, get_distribution
+
+try:
+    # Change here if project is renamed and does not equal the package name
+    dist_name = __name__
+    __version__ = get_distribution(dist_name).version
+except DistributionNotFound:
+    __version__ = "unknown"
+finally:
+    del get_distribution, DistributionNotFound

tests/conftest.py

@@ -0,0 +1,11 @@
+# -*- coding: utf-8 -*-
+"""
+    Dummy conftest.py for zotero_joplin_binder.
+
+    If you don't know what this is for, just leave it empty.
+    Read more about conftest.py under:
+    - https://docs.pytest.org/en/stable/fixture.html
+    - https://docs.pytest.org/en/stable/writing_plugins.html
+"""
+
+# import pytest