Update to v0.6.9000
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61 changed files with 511 additions and 102 deletions
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@ -33,7 +33,7 @@
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<a class="navbar-brand me-2" href="index.html">visualizeR</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.5.9000</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.6.9000</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -72,9 +72,7 @@
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<img src="logo.png" class="logo" alt=""><h1 id="visualizer-">visualizeR <a class="anchor" aria-label="anchor" href="#visualizer-"></a>
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</h1>
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</div>
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<blockquote>
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<p>What a color! What a viz!</p>
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</blockquote>
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<blockquote><p>What a color! What a viz!</p></blockquote>
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<p><code>visualizeR</code> proposes some utils to get REACH and AGORA colors, ready-to-go color palettes, and a few visualization functions (horizontal hist graph for instance).</p>
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<div class="section level2">
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<h2 id="installation">Installation<a class="anchor" aria-label="anchor" href="#installation"></a>
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@ -162,13 +160,11 @@
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<span><span class="fu"><a href="reference/bar.html">bar</a></span><span class="op">(</span><span class="va">df</span>, <span class="va">island</span>, <span class="va">mean_bl</span>, <span class="va">species</span>, percent <span class="op">=</span> <span class="cn">FALSE</span>, alpha <span class="op">=</span> <span class="fl">0.6</span>, x_title <span class="op">=</span> <span class="st">"Mean of bill length"</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-bar-chart-1.png" width="100%"></p>
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<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Using another color palette through `theme_reach()` and changing scale to percent</span></span>
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<code class="sourceCode R"><span><span class="co"># Using another color palette through `theme_reach()` and changing scale to percent</span></span>
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<span><span class="fu"><a href="reference/bar.html">bar</a></span><span class="op">(</span><span class="va">df</span>, <span class="va">island</span>,<span class="va">mean_bl</span>, <span class="va">species</span>, percent <span class="op">=</span> <span class="cn">TRUE</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>palette <span class="op">=</span> <span class="st">"artichoke_3"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-bar-chart-2.png" width="100%"></p>
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<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Not flipped, with text added, group_title, no y-axis and no bold for legend</span></span>
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<code class="sourceCode R"><span><span class="co"># Not flipped, with text added, group_title, no y-axis and no bold for legend</span></span>
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<span><span class="fu"><a href="reference/bar.html">bar</a></span><span class="op">(</span><span class="va">df</span>, <span class="va">island</span>, <span class="va">mean_bl</span>, <span class="va">species</span>, group_title <span class="op">=</span> <span class="st">"Species"</span>, flip <span class="op">=</span> <span class="cn">FALSE</span>, add_text <span class="op">=</span> <span class="cn">TRUE</span>, add_text_suffix <span class="op">=</span> <span class="st">"%"</span>, percent <span class="op">=</span> <span class="cn">FALSE</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>text_font_face <span class="op">=</span> <span class="st">"plain"</span>, axis_y <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-bar-chart-3.png" width="100%"></p>
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</div>
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@ -177,28 +173,50 @@
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</h3>
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<p>At this stage, <code>point_reach()</code> only supports categorical grouping colors with the <code>group</code> arg.</p>
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<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Simple point chart</span></span>
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<code class="sourceCode R"><span><span class="co"># Simple point chart</span></span>
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<span><span class="fu"><a href="reference/point.html">point</a></span><span class="op">(</span><span class="va">penguins</span>, <span class="va">bill_length_mm</span>, <span class="va">flipper_length_mm</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-point-chart-1.png" width="100%"></p>
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<div class="sourceCode" id="cb7"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Point chart with grouping colors, greater dot size, some transparency, reversed color palette</span></span>
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<code class="sourceCode R"><span><span class="co"># Point chart with grouping colors, greater dot size, some transparency, reversed color palette</span></span>
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<span><span class="fu"><a href="reference/point.html">point</a></span><span class="op">(</span><span class="va">penguins</span>, <span class="va">bill_length_mm</span>, <span class="va">flipper_length_mm</span>, <span class="va">island</span>, alpha <span class="op">=</span> <span class="fl">0.6</span>, size <span class="op">=</span> <span class="fl">3</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>reverse <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-point-chart-2.png" width="100%"></p>
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<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Using another color palettes</span></span>
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<code class="sourceCode R"><span><span class="co"># Using another color palettes</span></span>
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<span><span class="fu"><a href="reference/point.html">point</a></span><span class="op">(</span><span class="va">penguins</span>, <span class="va">bill_length_mm</span>, <span class="va">flipper_length_mm</span>, <span class="va">island</span>, size <span class="op">=</span> <span class="fl">1.5</span>, x_title <span class="op">=</span> <span class="st">"Bill"</span>, y_title <span class="op">=</span> <span class="st">"Flipper"</span>, title <span class="op">=</span> <span class="st">"Length (mm)"</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>palette <span class="op">=</span> <span class="st">"artichoke_3"</span>, text_font_face <span class="op">=</span> , grid_x <span class="op">=</span> <span class="cn">T</span>, title_position_to_plot <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-point-chart-3.png" width="100%"></p>
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</div>
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<div class="section level3">
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<h3 id="example-3-dumbbell-plot-reach-themed">Example 3! Dumbbell plot, REACH themed<a class="anchor" aria-label="anchor" href="#example-3-dumbbell-plot-reach-themed"></a>
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</h3>
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<p>Remember to ensure that your data are in the long format and you only have two groups on the x-axis; for instance, IDP and returnee and no NA values.</p>
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<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="co"># Prepare long data</span></span>
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<span><span class="va">df</span> <span class="op"><-</span> <span class="fu">tibble</span><span class="fu">::</span><span class="fu"><a href="https://tibble.tidyverse.org/reference/tibble.html" class="external-link">tibble</a></span><span class="op">(</span></span>
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<span> admin1 <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"A"</span>, <span class="st">"B"</span>, <span class="st">"C"</span>, <span class="st">"D"</span>, <span class="st">"E"</span>, <span class="st">"F"</span>, <span class="st">"G"</span>, <span class="st">"H"</span><span class="op">)</span>, <span class="fl">2</span><span class="op">)</span>,</span>
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<span> setting <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Rural"</span>, <span class="st">"Urban"</span><span class="op">)</span>, <span class="fl">4</span><span class="op">)</span>, <span class="fu"><a href="https://rdrr.io/r/base/rep.html" class="external-link">rep</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Urban"</span>, <span class="st">"Rural"</span><span class="op">)</span>, <span class="fl">4</span><span class="op">)</span><span class="op">)</span>,</span>
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<span> stat <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/stats/Normal.html" class="external-link">rnorm</a></span><span class="op">(</span><span class="fl">16</span>, mean <span class="op">=</span> <span class="fl">50</span>, sd <span class="op">=</span> <span class="fl">18</span><span class="op">)</span></span>
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<span><span class="op">)</span> <span class="op">|></span></span>
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<span> <span class="fu">dplyr</span><span class="fu">::</span><span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span>stat <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Round.html" class="external-link">round</a></span><span class="op">(</span><span class="va">stat</span>, <span class="fl">0</span><span class="op">)</span><span class="op">)</span></span>
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<span></span>
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<span><span class="co"># Example</span></span>
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<span><span class="fu"><a href="reference/dumbbell.html">dumbbell</a></span><span class="op">(</span><span class="va">df</span>,</span>
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<span> <span class="va">stat</span>,</span>
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<span> <span class="va">setting</span>,</span>
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<span> <span class="va">admin1</span>,</span>
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<span> title <span class="op">=</span> <span class="st">"% of HHs that reported open defecation as sanitation facility"</span>,</span>
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<span> group_y_title <span class="op">=</span> <span class="st">"Admin 1"</span>,</span>
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<span> theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>legend_position <span class="op">=</span> <span class="st">"bottom"</span>,</span>
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<span> legend_direction <span class="op">=</span> <span class="st">"horizontal"</span>,</span>
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<span> palette <span class="op">=</span> <span class="st">"primary"</span>,</span>
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<span> title_position_to_plot <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-dumbbell-plot-1.png" width="100%"></p>
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</div>
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</div>
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<div class="section level2">
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<h2 id="maps">Maps<a class="anchor" aria-label="anchor" href="#maps"></a>
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</h2>
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<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Add indicator layer </span></span>
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<div class="sourceCode" id="cb10"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="co"># Add indicator layer </span></span>
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<span><span class="co"># - based on "pretty" classes and title "Proportion (%)" </span></span>
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<span><span class="co"># - buffer to add a 10% around the bounding box</span></span>
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<span><span class="va">map</span> <span class="op"><-</span> <span class="fu"><a href="reference/add_indicator_layer.html">add_indicator_layer</a></span><span class="op">(</span></span>
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