diff --git a/.Rbuildignore b/.Rbuildignore index a4d2a9f..f529ba5 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -1,19 +1,10 @@ -^.*\.Rproj$ -^LICENSE\.md$ -^README\.Rmd -^\.Rproj\.user$ -^\.github$ -^\.pre-commit-config\.yaml$ -^_pkgdown\.yml$ -^codecov\.yml$ -^data-raw$ -^docs -^docs$ -^pkgdown$ -^pkgdown\.css -^renv$ -^renv$ -^renv\.lock$ -^renv\.lock$ -^test-example.R -^test\.R$ +^.*\.Rproj$ +^\.Rproj\.user$ +^LICENSE\.md$ +^README\.Rmd +^pkgdown\.css +^docs +^_pkgdown\.yml$ +^docs$ +^pkgdown$ +^data-raw$ diff --git a/.Rprofile b/.Rprofile deleted file mode 100644 index 4be44ff..0000000 --- a/.Rprofile +++ /dev/null @@ -1,3 +0,0 @@ -# source("renv/activate.R") -options(repos = c(CRAN = "https://p3m.dev/cran/__linux__/manylinux_2_28/latest")) -options(renv.config.pak.enabled = TRUE) diff --git a/.github/.gitignore b/.github/.gitignore deleted file mode 100644 index 2d19fc7..0000000 --- a/.github/.gitignore +++ /dev/null @@ -1 +0,0 @@ -*.html diff --git a/.github/pull_request_template.md b/.github/pull_request_template.md deleted file mode 100644 index f5ccba4..0000000 --- a/.github/pull_request_template.md +++ /dev/null @@ -1,32 +0,0 @@ -## PR Description - - -## Type of change - - -- [ ] Bug fix (non-breaking change which fixes an issue) -- [ ] New feature (non-breaking change which adds functionality) -- [ ] Breaking change (fix or feature that would cause existing functionality to not work as expected) -- [ ] Documentation update -- [ ] Code refactoring or style updates - -## Checklist: - - -- [ ] My code follows the style guidelines of this project -- [ ] I have performed a self-review of my own code -- [ ] I have commented my code, particularly in hard-to-understand areas -- [ ] I have made corresponding changes to the documentation -- [ ] My changes generate no new warnings -- [ ] I have added tests that prove my fix is effective or that my feature works -- [ ] New and existing unit tests pass locally with my changes - -## Notes for reviewers - - -## Automated Checks -The following checks will run automatically on this PR: -- R CMD check -- Documentation updates -- Test coverage -- Linting and style checks diff --git a/.github/workflows/R-CMD-check.yml b/.github/workflows/R-CMD-check.yml deleted file mode 100644 index 3173916..0000000 --- a/.github/workflows/R-CMD-check.yml +++ /dev/null @@ -1,56 +0,0 @@ -# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. -# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions -on: - push: - branches: [main, master] - pull_request: - branches: [main, master] - -name: R-CMD-check - -jobs: - R-CMD-check: - runs-on: ${{ matrix.config.os }} - - name: ${{ matrix.config.os }} (${{ matrix.config.r }}) - - strategy: - fail-fast: false - matrix: - config: - - {os: windows-latest, r: 'release'} - - {os: macOS-latest, r: 'release'} - - {os: ubuntu-latest, r: 'release'} - - {os: ubuntu-latest, r: 'devel', http-user-agent: 'release'} - - env: - R_REMOTES_NO_ERRORS_FROM_WARNINGS: true - RSPM: ${{ matrix.config.rspm }} - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - - steps: - - uses: actions/checkout@v3 - - - uses: r-lib/actions/setup-pandoc@v2 - - - uses: r-lib/actions/setup-r@v2 - with: - r-version: ${{ matrix.config.r }} - http-user-agent: ${{ matrix.config.http-user-agent }} - use-public-rspm: true - - - uses: r-lib/actions/setup-r-dependencies@v2 - with: - extra-packages: any::rcmdcheck - needs: check - - - name: Document - run: | - install.packages("devtools") - devtools::document() - shell: Rscript {0} - if: github.event_name == 'pull_request' - - - uses: r-lib/actions/check-r-package@v2 - with: - upload-snapshots: true diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml deleted file mode 100644 index f447d64..0000000 --- a/.github/workflows/lint.yml +++ /dev/null @@ -1,40 +0,0 @@ -# Workflow for linting and style checks -on: - push: - branches: [main, master] - pull_request: - branches: [main, master] - -name: lint - -jobs: - lint: - runs-on: ubuntu-latest - env: - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - steps: - - uses: actions/checkout@v3 - - - uses: r-lib/actions/setup-r@v2 - with: - use-public-rspm: true - - - uses: r-lib/actions/setup-r-dependencies@v2 - with: - extra-packages: | - any::lintr - any::styler - needs: lint - - - name: Lint - run: | - lintr::lint_package() - shell: Rscript {0} - - - name: Style check - run: | - if (!styler::style_pkg(dry = TRUE)) { - message("Some files are not properly styled!") - quit(status = 1) - } - shell: Rscript {0} diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml deleted file mode 100644 index bfc9f4d..0000000 --- a/.github/workflows/pkgdown.yaml +++ /dev/null @@ -1,49 +0,0 @@ -# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples -# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help -on: - push: - branches: [main, master] - pull_request: - release: - types: [published] - workflow_dispatch: - -name: pkgdown.yaml - -permissions: read-all - -jobs: - pkgdown: - runs-on: ubuntu-latest - # Only restrict concurrency for non-PR jobs - concurrency: - group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} - env: - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - permissions: - contents: write - steps: - - uses: actions/checkout@v4 - - - uses: r-lib/actions/setup-pandoc@v2 - - - uses: r-lib/actions/setup-r@v2 - with: - use-public-rspm: true - - - uses: r-lib/actions/setup-r-dependencies@v2 - with: - extra-packages: any::pkgdown, local::. - needs: website - - - name: Build site - run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) - shell: Rscript {0} - - - name: Deploy to GitHub pages 🚀 - if: github.event_name != 'pull_request' - uses: JamesIves/github-pages-deploy-action@v4.5.0 - with: - clean: false - branch: gh-pages - folder: docs diff --git a/.github/workflows/test-coverage.yml b/.github/workflows/test-coverage.yml deleted file mode 100644 index 0a1c21f..0000000 --- a/.github/workflows/test-coverage.yml +++ /dev/null @@ -1,55 +0,0 @@ -# Run test-coverage for visualizeR package -on: - push: - branches: [main, master] - pull_request: - branches: [main, master] - -name: test-coverage - -jobs: - test-coverage: - runs-on: ubuntu-latest - env: - GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} - steps: - - uses: actions/checkout@v3 - - - uses: r-lib/actions/setup-r@v2 - with: - use-public-rspm: true - - - uses: r-lib/actions/setup-r-dependencies@v2 - with: - extra-packages: | - any::covr - any::remotes - needs: coverage - - - name: Install package - run: | - R CMD build . - R CMD INSTALL *.tar.gz - - - name: Test coverage - run: | - covr::codecov( - quiet = FALSE, - clean = FALSE, - install_path = file.path(Sys.getenv("RUNNER_TEMP"), "package") - ) - shell: Rscript {0} - - - name: Show testthat output - if: always() - run: | - ## Print out test results details - find . -name 'testthat.Rout*' -exec cat '{}' \; || true - shell: bash - - - name: Upload test results - if: failure() - uses: actions/upload-artifact@v4 - with: - name: coverage-test-failures - path: ${{ runner.temp }}/package diff --git a/.gitignore b/.gitignore index e00605f..ae73e6d 100644 --- a/.gitignore +++ b/.gitignore @@ -1,10 +1,5 @@ -.Rproj.user -.Rhistory -.Rdata -.httr-oauth -.DS_Store -R/test.R -inst/doc - -/.quarto/ -docs +.Rproj.user +.Rhistory +.Rdata +.httr-oauth +.DS_Store diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml deleted file mode 100644 index b233962..0000000 --- a/.pre-commit-config.yaml +++ /dev/null @@ -1,93 +0,0 @@ -# All available hooks: https://pre-commit.com/hooks.html -# R specific hooks: https://github.com/lorenzwalthert/precommit -repos: - - repo: https://github.com/lorenzwalthert/precommit - rev: v0.4.3.9012 - hooks: - - id: style-files - args: [--style_pkg=styler, --style_fun=tidyverse_style] - - id: roxygenize - # roxygen requires loading pkg -> add dependencies from DESCRIPTION - additional_dependencies: - - ggplot2 - - rlang - - grDevices - - glue - - scales - - ggtext - - ggrepel - - tidyr - - dplyr - - ggalluvial - - viridisLite - - waffle - - stringr - - checkmate - - forcats - - # codemeta must be above use-tidy-description when both are used - # - id: codemeta-description-updated - - id: use-tidy-description - - id: spell-check - exclude: > - (?x)^( - .*\.[rR]| - .*\.feather| - .*\.jpeg| - .*\.pdf| - .*\.png| - .*\.py| - .*\.RData| - .*\.rds| - .*\.Rds| - .*\.Rproj| - .*\.sh| - (.*/|)\.gitignore| - (.*/|)\.gitlab-ci\.yml| - (.*/|)\.lintr| - (.*/|)\.pre-commit-.*| - (.*/|)\.Rbuildignore| - (.*/|)\.Renviron| - (.*/|)\.Rprofile| - (.*/|)\.travis\.yml| - (.*/|)appveyor\.yml| - (.*/|)NAMESPACE| - (.*/|)renv/settings\.dcf| - (.*/|)renv\.lock| - (.*/|)WORDLIST| - \.github/workflows/.*| - data/.*| - )$ - - id: readme-rmd-rendered - - id: parsable-R - - id: no-browser-statement - - id: no-print-statement - - id: no-debug-statement - - id: deps-in-desc - - id: pkgdown - - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v5.0.0 - hooks: - - id: check-added-large-files - args: ["--maxkb=200"] - - id: file-contents-sorter - files: '^\.Rbuildignore$' - - id: end-of-file-fixer - exclude: '\.Rd' - - repo: https://github.com/pre-commit-ci/pre-commit-ci-config - rev: v1.6.1 - hooks: - # Only required when https://pre-commit.ci is used for config validation - - id: check-pre-commit-ci-config - - repo: local - hooks: - - id: forbid-to-commit - name: Don't commit common R artifacts - entry: Cannot commit .Rhistory, .RData, .Rds or .rds. - language: fail - files: '\.(Rhistory|RData|Rds|rds)$' - # `exclude: ` to allow committing specific files - -ci: - autoupdate_schedule: monthly - skip: [pkgdown] diff --git a/DESCRIPTION b/DESCRIPTION index 0070ce0..083bbdd 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,41 +1,29 @@ -Type: Package Package: visualizeR +Type: Package Title: What a color! What a viz! -Version: 1.0 -Authors@R: - person("Noblet", "Guillaume", , "gnoblet@zaclys.net", role = c("aut", "cre")) -Maintainer: Guillaume Noblet -Description: It basically provides colors as hex codes, color palettes, - and some viz functions (graphs and maps). -License: GPL (>= 3) +Version: 0.3.9000 +Authors@R: c( + person( + 'Noblet', 'Guillaume', + email = 'gnoblet@zaclys.net', + role = c('aut', 'cre') + ) + ) URL: https://github.com/gnoblet/visualizeR, - https://gnoblet.github.io/visualizeR/ -Depends: - R (>= 4.1.0) -Imports: - checkmate, - dplyr, - forcats, - ggplot2, - ggrepel, - ggtext, - glue, - grDevices, - rlang (>= 0.4.11), - scales, - tidyr -Suggests: - covr, - knitr, - rio, - rmarkdown, - roxygen2, - testthat (>= 3.0.0), - vdiffr, - withr -VignetteBuilder: - knitr -Config/testthat/edition: 3 + https://gnoblet.github.io/visualizeR/ +Maintainer: Guillaume Noblet +Description: It basically provides colors as hex codes, color palettes, and some viz functions (graphs and maps). +Depends: R (>= 4.1.0) +License: GPL (>= 3) Encoding: UTF-8 LazyData: true -RoxygenNote: 7.3.2 +RoxygenNote: 7.2.1 +Imports: + ggplot2, + rlang, + grDevices, + glue, + scales, + ggblanket (== 1.6.1) +Suggests: knitr, sf, tmap +VignetteBuilder: knitr diff --git a/NEWS.md b/NEWS.md index 61ad5bf..fa45d9e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,52 +1,8 @@ -# visualizeR 0.8.9000 - -* Add `waffle()`. -* Add a `pal_default()` function as a fallback for scale functions and as an initiative in `theme_reach()`. It uses `viridis::magma()`. -* Update of AGORA palettes. -* Some other small bug fixes. - ---- - -# visualizeR 0.7.9000 - -* Add `dumbbell()`. -* Add `alluvial()` -* Add `donut()` -* Add `lollipop()` -* Add further parameters to `theme_reach()`, including grid lines args. - ---- - -# visualizeR 0.6.9000 - -* Add `dumbbell()`. -* Add further parameters to `theme_reach()`. - ---- - -# visualizeR 0.5.9000 - -* Add wrapping of title, subtitle and caption thanks to `ggtext` -* Add wrapping of labels for `bar()` x-discrete scale. -* Add further parameters to `theme_reach()` - ---- - -# visualizeR 0.4.9000 - -* Breaking changes: remove dependency to `ggblanket`. -* Full rewrite of `theme_reach()`. -* `bar_reach` is now `bar()` and theming is passed through argument `theme` for which default is `theme_reach()`. -* `point_reach` is now `point()` and theming is passed through argument `theme` for which default is `theme_reach()`. - ---- - # visualizeR 0.3.9000 * Breaking changes: update to `ggblanket` v1.6.1. * Add plotting functions for indicator maps. ---- # visualizeR 0.2.9000 diff --git a/R/bar.R b/R/bar.R index 50b7a01..094b97a 100644 --- a/R/bar.R +++ b/R/bar.R @@ -1,464 +1,72 @@ -#' @rdname bar -#' -#' @inheritParams bar -#' -#' @param ... Additional arguments passed to `bar()` -#' -#' @export -hbar <- function( - ..., - flip = TRUE, - add_text = FALSE, - theme_fun = theme_bar(flip = flip, add_text = add_text)) { - bar(flip = flip, add_text = add_text, theme_fun = theme_fun, ...) -} - -#' Simple bar chart -#' -#' `bar()` is a simple bar chart with some customization allowed, in particular the `theme_fun` argument for theming. `hbar()` uses `bar()` with sane defaults for a horizontal bar chart. +#' @title Simple bar chart #' #' @param df A data frame. -#' @param x A quoted numeric column. -#' @param y A quoted character column or coercible as a character column. -#' @param group Some quoted grouping categorical column, e.g. administrative areas or population groups. -#' @param facet Some quoted grouping categorical column, e.g. administrative areas or population groups. -#' @param x_rm_na Remove NAs in x? -#' @param y_rm_na Remove NAs in y? -#' @param group_rm_na Remove NAs in group? -#' @param facet_rm_na Remove NAs in facet? -#' @param y_expand Multiplier to expand the y axis. -#' @param add_color Add a color to bars (if no grouping). -#' @param add_color_guide Should a legend be added? -#' @param flip TRUE or FALSE (default). Default to TRUE or horizontal bar plot. -#' @param wrap Should x-labels be wrapped? Number of characters. -#' @param position Should the chart be stacked? Default to "dodge". Can take "dodge" and "stack". -#' @param alpha Fill transparency. +#' @param x A numeric column. +#' @param y A character column or coercible as a character column. +#' @param group Some grouping categorical column, e.g. administrative areas or population groups. +#' @param palette Palette name from 'pal_reach()'. +#' @param percent TRUE or FALSE. Should the x-labels be displayed as percentages? Default to TRUE. +#' @param reverse Boolean indicating whether the palette should be reversed. +#' @param family The font family for all plot's texts. Default to "Leelawadee". +#' @param alpha Transparency. +#' @param width Width. #' @param x_title The x scale title. Default to NULL. #' @param y_title The y scale title. Default to NULL. #' @param group_title The group legend title. Default to NULL. +#' @param position Should the chart be stacked? Default to "dodge". Can take "dodge" and "stack". #' @param title Plot title. Default to NULL. #' @param subtitle Plot subtitle. Default to NULL. -#' @param caption Plot caption. Default to NULL. -#' @param width Bar width. -#' @param add_text TRUE or FALSE. Add values as text. -#' @param add_text_size Text size. -#' @param add_text_color Text color. -#' @param add_text_font_face Text font_face. -#' @param add_text_threshold_display Minimum value to add the text label. -#' @param add_text_suffix If percent is FALSE, should we add a suffix to the text label? -#' @param add_text_expand_limit Default to adding 10\% on top of the bar. -#' @param add_text_round Round the text label. -#' @param theme_fun Whatever theme function. For no custom theme, use theme_fun = NULL. -#' @param scale_fill_fun Scale fill function. Default to scale_fill_visualizer_discrete(). -#' @param scale_color_fun Scale color function. Default to scale_color_visualizer_discrete(). +#' @param caption Caption title string. Default to NULL. +#' @param text_size The size of all text other than the title, subtitle and caption. Defaults to 10. +#' @param title_size The size of the title text. Defaults to 14. +#' @param legend_position Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none". +#' @param legend_rev Reverse the color in the guide? Default to TRUE. +#' @param ... Other arguments to be passed to "ggblanket::gg_col" #' -#' @inheritParams reorder_by +#' @description `ggblanket` as internals for deciding whether the bar chart is horizontally readable. #' -#' @importFrom rlang `:=` +#' @return A bar chart #' #' @export -bar <- function( - df, - x, - y, - group = "", - facet = "", - order = "none", - x_rm_na = TRUE, - y_rm_na = TRUE, - group_rm_na = TRUE, - facet_rm_na = TRUE, - y_expand = 0.1, - add_color = color("cat_5_main_1"), - add_color_guide = TRUE, - flip = FALSE, - wrap = NULL, - position = "dodge", - alpha = 1, - x_title = NULL, - y_title = NULL, - group_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - width = 0.8, - add_text = FALSE, - add_text_size = 4.5, - add_text_color = color("dark_grey"), - add_text_font_face = "bold", - add_text_threshold_display = 0.05, - add_text_suffix = "%", - add_text_expand_limit = 1.2, - add_text_round = 1, - theme_fun = theme_bar( - flip = flip, - add_text = add_text, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5 - ), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete()) { - #------ Checks +bar_reach <- function(df, x, y, group = NULL, percent = TRUE, palette = "main", reverse = FALSE, family = "Leelawadee", alpha = 1, width = 0.5, x_title = NULL, y_title = NULL, group_title = NULL, position = "dodge", title = NULL, subtitle = NULL, caption = NULL, text_size = 10, title_size = 14, legend_position = "right", legend_rev = TRUE, ...){ - # df is a data frame - checkmate::assert_data_frame(df) + pal <- pal_reach(palette) - # x and y and group are character - checkmate::assert_character(x, len = 1) - checkmate::assert_character(y, len = 1) - checkmate::assert_character(group, len = 1) - - # x and y are columns in df - checkmate::assert_choice(x, colnames(df)) - checkmate::assert_choice(y, colnames(df)) - if (group != "") { - checkmate::assert_choice(group, colnames(df)) - } - - # x_rm_na, y_rm_na and group_rm_na are logical scalar - checkmate::assert_logical(x_rm_na, len = 1) - checkmate::assert_logical(y_rm_na, len = 1) - checkmate::assert_logical(group_rm_na, len = 1) - checkmate::assert_logical(facet_rm_na, len = 1) - - # flip is a logical scalar - checkmate::assert_logical(flip, len = 1) - - # wrap is a numeric scalar or NULL - if (!is.null(wrap)) { - checkmate::assert_numeric(wrap, len = 1, null.ok = TRUE) - } - - # alpha is a numeric scalar between 0 and 1 - checkmate::assert_numeric(alpha, lower = 0, upper = 1, len = 1) - - # add_text is a logical scalar - checkmate::assert_logical(add_text, len = 1) - - # add_text_size is a numeric scalar - checkmate::assert_numeric(add_text_size, len = 1) - - # add_text_font_face is a character scalar in bold plain or italic - checkmate::assert_choice(add_text_font_face, c("bold", "plain", "italic")) - - # add_text_threshold_display is a numeric scalar - checkmate::assert_numeric(add_text_threshold_display, len = 1) - - # add_text_suffix is a character scalar - checkmate::assert_character(add_text_suffix, len = 1) - - # add_text_expand_limit is a numeric scalar - checkmate::assert_numeric(add_text_expand_limit, len = 1) - - # add_text_round is a numeric scalar - checkmate::assert_numeric(add_text_round, len = 1) - - # x and y are numeric or character - if (class(df[[y]]) %notin% c("integer", "numeric")) { - rlang::abort(paste0(y, " must be numeric.")) - } - if (!any(class(df[[x]]) %in% c("character", "factor"))) { - rlang::abort(paste0(x, " must be character or factor")) - } - - # width is a numeric scalar between 0 and 1 - checkmate::assert_numeric(width, lower = 0, upper = 1, len = 1) - - # Check if position is stack or dodge - if (position %notin% c("stack", "dodge")) { - rlang::abort("Position should be either 'stack' or 'dodge'.") - } - - #----- Data wrangling - - # facets over group - if (group != "" && facet != "" && group == facet) { - rlang::warn("'group' and 'facet' are the same identical.") - } - - # remove NAs using base R - if (x_rm_na) { - df <- df[!(is.na(df[[x]])), ] - } - if (y_rm_na) { - df <- df[!(is.na(df[[y]])), ] - } - if (group != "" && group_rm_na) { - df <- df[!(is.na(df[[group]])), ] - } - if (facet != "" && facet_rm_na) { - df <- df[!(is.na(df[[facet]])), ] - } - - # reorder - dir_order <- if (flip && order %in% c("x", "grouped_x")) { - -1 - } else if (!flip && order %in% c("x", "grouped_x")) { - 1 - } else if (flip) { - 1 - } else { - -1 - } - group_order <- if (group != "" || (group == "" && facet == "")) { - group - } else if (group == "" && facet != "") { - facet - } - df <- reorder_by( - df = df, - x = x, - y = y, - group = group_order, - order = order, - dir_order = dir_order + if(is.null(pal)) rlang::warn( + c(paste0("There is no palette '", palette, "' for initiative 'reach'. Fallback to ggblanket's default color palette."), + "i" = paste0("Use `pal_reach(show_palettes = T)` to see the list of availabale palettes.") + ) ) - # prepare aes - if (group != "") { - g <- ggplot2::ggplot( - df, - mapping = ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y), - fill = !!rlang::sym(group), - color = !!rlang::sym(group) - ) - ) - } else { - g <- ggplot2::ggplot( - df, - mapping = ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y) - ) - ) - } + if (percent) x_labels <- scales::percent else x_labels <- NULL - # add title, subtitle, caption, x_title, y_title - g <- g + - ggplot2::labs( - title = title, - subtitle = subtitle, - caption = caption, - x = y_title, - y = x_title, - color = group_title, - fill = group_title - ) - - # width - width <- width - dodge_width <- width - - # facets - if (facet != "") { - if (flip) { - g <- g + - ggplot2::facet_grid( - rows = ggplot2::vars(!!rlang::sym(facet)), - scales = "free", - space = "free_y" - ) - } else { - g <- g + - ggplot2::facet_grid( - cols = ggplot2::vars(!!rlang::sym(facet)), - scales = "free", - space = "free_x" - ) - } - } - - # should the graph use position_fill? - if (group != "") { - if (position == "stack") { - g <- g + - ggplot2::geom_col( - alpha = alpha, - width = width, - position = ggplot2::position_stack() - ) - } else if (position == "dodge") { - g <- g + - ggplot2::geom_col( - alpha = alpha, - width = width, - position = ggplot2::position_dodge2( - width = dodge_width, - preserve = "single" - ) - ) - } else { - g <- g + - ggplot2::geom_col( - alpha = alpha, - width = width - ) - } - } else { - if (position == "stack") { - g <- g + - ggplot2::geom_col( - alpha = alpha, - width = width, - position = ggplot2::position_stack(), - fill = add_color, - color = add_color - ) - } else if (position == "dodge") { - g <- g + - ggplot2::geom_col( - alpha = alpha, - width = width, - position = ggplot2::position_dodge2( - width = dodge_width, - preserve = "single" + pl <- df |> + ggblanket::gg_col(x = {{ x }}, + y = {{ y }}, + col = {{ group }}, + x_title = x_title, + x_labels = x_labels, + y_title = y_title, + col_title = group_title, + alpha = alpha, + width = width, + position = position, + title = title, + subtitle = subtitle, + caption = caption, + col_legend_place = legend_position, + theme = theme_reach( + palette = palette, + reverse = reverse, + family = family, + text_size = text_size, + title_size = title_size, + plot_background_pal = "#FFFFFF", + panel_background_pal = "#FFFFFF", + legend_reverse = legend_rev ), - fill = add_color, - color = add_color - ) - } else { - g <- g + - ggplot2::geom_col( - alpha = alpha, - width = width, - fill = add_color, - color = add_color - ) - } - } + ... + ) - # wrap labels on the x scale? - if (!is.null(wrap)) { - g <- g + ggplot2::scale_x_discrete(labels = scales::label_wrap(wrap)) - } - - # because a text legend should always be horizontal, especially for an horizontal bar graph - if (flip) { - g <- g + ggplot2::coord_flip() - } - # add text to bars - if (flip) { - hjust_flip <- -0.5 - } else { - hjust_flip <- 0.5 - } - if (flip) { - vjust_flip <- 0.5 - } else { - vjust_flip <- -0.5 - } - - # function for interactio - interaction_f <- function(group, facet, data) { - if (group == "" && facet == "") { - return(NULL) - } else if (group != "" && facet != "") { - return(interaction(data[[group]], data[[facet]])) - } else if (group != "") { - return(data[[group]]) - } else if (facet != "") { - return(data[[facet]]) - } else { - return(NULL) - } - } - - # add text labels - if (add_text & position == "dodge") { - df$y_threshold <- ifelse(df[[y]] >= add_text_threshold_display, df[[y]], NA) - - # expand limits - g <- g + - ggplot2::geom_blank( - data = df, - ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y) * add_text_expand_limit, - group = interaction_f(group, facet, df) - ) - ) - g <- g + - ggplot2::geom_text( - data = df, - ggplot2::aes( - label = ifelse( - is.na(!!rlang::sym("y_threshold")), - NA, - paste0( - round(!!rlang::sym("y_threshold"), add_text_round), - add_text_suffix - ) - ), - group = interaction_f(group, facet, df) - ), - hjust = hjust_flip, - vjust = vjust_flip, - color = add_text_color, - fontface = add_text_font_face, - size = add_text_size, - position = ggplot2::position_dodge2(width = dodge_width) - ) - } else if (add_text & position == "stack") { - df$y_threshold <- ifelse(df[[y]] >= add_text_threshold_display, df[[y]], NA) - - g <- g + - ggplot2::geom_text( - data = df, - ggplot2::aes( - label = ifelse( - is.na(!!rlang::sym("y_threshold")), - NA, - paste0( - round(!!rlang::sym("y_threshold"), add_text_round), - add_text_suffix - ) - ), - group = interaction_f(group, facet, df) - ), - hjust = hjust_flip, - vjust = vjust_flip, - color = add_text_color, - fontface = add_text_font_face, - size = add_text_size, - position = ggplot2::position_dodge2(width = dodge_width) - ) - } - - # y scale tweaks - g <- g + - ggplot2::scale_y_continuous( - # start at 0 - expand = ggplot2::expansion(mult = c(0, y_expand)), - # remove trailing 0 and choose accuracy of y labels - labels = scales::label_number( - accuracy = 0.1, - drop0trailing = TRUE, - big.mark = "", - decimal.mark = "." - ), - ) - - # # remove guides for legend if !add_color_guide - if (!add_color_guide) { - g <- g + ggplot2::guides(fill = "none", color = "none") - } - - # # add theme fun - if (!is.null(theme_fun)) { - g <- g + theme_fun - } - - # # # add scale fun - if (!is.null(scale_fill_fun)) { - g <- g + scale_fill_fun - } - - if (!is.null(scale_color_fun)) { - g <- g + scale_color_fun - } - - return(g) + return(pl) } diff --git a/R/bbox_buffer.R b/R/bbox_buffer.R new file mode 100644 index 0000000..be11e5a --- /dev/null +++ b/R/bbox_buffer.R @@ -0,0 +1,39 @@ +#' @title Bbbox buffer +#' +#' @param sf_obj A `sf` object +#' @param buffer A buffer, either one value or a vector of 4 values (left, bottom, right, top). Default to 0. +#' +#' @return A bbox with a buffer +#' +#' @export +buffer_bbox <- function(sf_obj, buffer = 0){ + + rlang::check_installed("sf", reason = "Package \"sf\" needed for `buffer_bbox()` to work. Please install it.") + + + if (!(length(buffer) %in% c(1,4)) | !is.numeric(buffer)) stop("Please provide a numeric buffer of length 1 or 4.") + + bbox <- sf::st_bbox(sf_obj) + xrange <- bbox$xmax - bbox$xmin # range of x values + yrange <- bbox$ymax - bbox$ymin # range of y values + + + bbox_with_buffer <- if (length(buffer) == 1) { + c( + bbox[1] - (buffer * xrange), # xmin - left + bbox[2] - (buffer * yrange), # ymin - bottom + bbox[3] + (buffer * xrange), # xmax - right + bbox[4] + (buffer * yrange) # ymax - top + ) + } else if (length(buffer) == 4) { + c( + bbox[1] - (buffer[1] * xrange), # xmin - left + bbox[2] - (buffer[2] * yrange), # ymin - bottom + bbox[3] + (buffer[3] * xrange), # xmax - right + bbox[4] + (buffer[4] * yrange) # ymax - top + ) + } else { + print("Missed something while writing the funtion.") + } + +} diff --git a/R/checks.R b/R/checks.R deleted file mode 100644 index e602c02..0000000 --- a/R/checks.R +++ /dev/null @@ -1,17 +0,0 @@ -#' @title Check if variables are in data frame -#' -#' @param df A data frame -#' @param vars A vector of variable names -#' -#' @return A stop statement -check_vars_in_df <- function(df, vars) { - vars_nin <- setdiff(vars, colnames(df)) - - if (length(vars_nin) > 0) { - rlang::abort(glue::glue( - "Variables ", - glue::glue_collapse(vars_nin, sep = ", ", last = ", and "), - " not found in data frame." - )) - } -} diff --git a/R/color.R b/R/color.R deleted file mode 100644 index fa3b479..0000000 --- a/R/color.R +++ /dev/null @@ -1,162 +0,0 @@ -#' Helpers to extract defined colors as hex codes -#' -#' [color()] returns the requested columns, returns NA if absent. [color_pattern()] returns all colors that start with the pattern. -#' -#' @param ... Character names of colors. If NULL returns all colors. -#' @param unname Boolean. Should the output vector be unnamed? Default to `TRUE`. -#' @section Naming of colors: -#' * All branding colors start with "branding"; -#' * All , categorical colors start with ", cat_"; -#' * All sequential colors start with "seq_"; -#' -#' Then, a number indicates the number of colors that belong to the palettes, a string the name of the palette, and, finally, a number the position of the color. E.g., "seq_5_red_4" would be the 4th color of a continuous palettes of 5 colors in the red band. Exception is made for white, light_grey, dark_grey, and black. -#' -#' -#' @return Hex codes named or unnamed. -#' -#' @export -color <- function(..., unname = TRUE) { - #------ Checks - - # unname is a logical scalar - checkmate::assert_logical(unname, len = 1) - - # all elements in ... are character strings - dots <- list(...) - if (length(dots) > 0) { - # Check each argument is a single character string - for (i in seq_along(dots)) { - checkmate::assert_string(dots[[i]], .var.name = paste0("Argument #", i)) - } - } - - #------ Prep - - # retrieve colors - cols <- c(...) - - # define color vector - colors <- c( - white = "#FFFFFF", - lighter_grey = "#F5F5F5", - light_grey = "#E3E3E3", - dark_grey = "#464647", - light_blue_grey = "#B3C6D1", - grey = "#71716F", - black = "#000000", - cat_2_yellow_1 = "#ffc20a", - cat_2_yellow_2 = "#0c7bdc", - cat_2_light_1 = "#fefe62", - cat_2_light_2 = "#d35fb7", - cat_2_green_1 = "#1aff1a", - cat_2_green_2 = "#4b0092", - cat_2_blue_1 = "#1a85ff", - cat_2_blue_2 = "#d41159", - cat_5_main_1 = "#083d77", # yale blue - cat_5_main_2 = "#4ecdc4", # robin egg blue - cat_5_main_3 = "#f4c095", # peach - cat_5_main_4 = "#b47eb3", # african violet - cat_5_main_5 = "#ffd5ff", # mimi pink - seq_5_main_1 = "#083d77", # yale blue - seq_5_main_2 = "##396492", - seq_5_main_3 = "#6b8bad", - seq_5_main_4 = "#9cb1c9", - seq_5_main_5 = "#ced8e4", - cat_5_ibm_1 = "#648fff", - cat_5_ibm_2 = "#785ef0", - cat_5_ibm_3 = "#dc267f", - cat_5_ibm_4 = "#fe6100", - cat_5_ibm_5 = "#ffb000", - cat_3_aquamarine_1 = "aquamarine2", - cat_3_aquamarine_2 = "cornflowerblue", - cat_3_aquamarine_3 = "brown1", - cat_3_tol_high_contrast_1 = "#215589", - cat_3_tol_high_contrast_2 = "#cfaa34", - cat_3_tol_high_contrast_3 = "#a35364", - cat_8_tol_adapted_1 = "#332e86", - cat_8_tol_adapted_2 = "#50504f", - cat_8_tol_adapted_3 = "#3dab9a", - cat_8_tol_adapted_4 = "#86ccee", - cat_8_tol_adapted_5 = "#ddcb77", - cat_8_tol_adapted_6 = "#ee5859", - cat_8_tol_adapted_7 = "#aa4599", - cat_8_tol_adapted_8 = "#721220", - div_5_orange_blue_1 = "#c85200", - div_5_orange_blue_2 = "#e48646", - div_5_orange_blue_3 = "#cccccc", - div_5_orange_blue_4 = "#6b8ea4", - div_5_orange_blue_5 = "#366785", - div_5_green_purple_1 = "#c85200", - div_5_green_purple_2 = "#e48646", - div_5_green_purple_3 = "#cccccc", - div_5_green_purple_4 = "#6b8ea4", - div_5_green_purple_5 = "#366785" - ) - - #------ Checks - - # Check that if ... is not null, all colors are defined - if (!is.null(cols)) { - if (cols %notallin% names(colors)) { - rlang::abort(c( - "Some colors not defined", - "*" = glue::glue_collapse( - ...[which(!... %in% names(cols))], - sep = ", ", - last = ", and " - ), - "i" = "Use `color(unname = FALSE)` to see all named available colors." - )) - } - } - - # ------ Return - - if (is.null(cols)) { - cols_to_return <- colors - } else { - cols_to_return <- colors[cols] - } - - if (unname) { - cols_to_return <- unname(cols_to_return) - } - - return(cols_to_return) -} - -#' @rdname color -#' -#' @param pattern Pattern of the start of colors' name. -#' -#' @export -color_pattern <- function(pattern, unname = TRUE) { - #------ Checks - - # Check that pattern is a character scalar - checkmate::assert_character(pattern, len = 1) - - # Check that unname is a logical scalar - checkmate::assert_logical(unname, len = 1) - - #------ Get colors - - # Get colors - col <- color(unname = FALSE) - col <- col[startsWith(names(col), pattern)] - - if (unname) { - col <- unname(col) - } - - # If col is of length 0, warn - if (length(col) == 0) { - rlang::warn(c( - "No colors match the pattern", - "*" = glue::glue("Pattern used is:'{pattern}'"), - "i" = "Use `color(unname = FALSE)` to see all named available colors." - )) - } - - return(col) -} diff --git a/R/cols_agora.R b/R/cols_agora.R new file mode 100644 index 0000000..5b2333f --- /dev/null +++ b/R/cols_agora.R @@ -0,0 +1,32 @@ +#' @title Function to extract AGORA colors as hex codes +#' +#' @param ... Character names of reach colors. If NULL returns all colors +#' @param unnamed Should the output vector be unnamed? Default to `TRUE` +#' +#' @return An hex code or hex codes named or unnamed +#' +#' @details This function needs to be modified to add colors +#' +#' @export +cols_agora <- function(..., unnamed = TRUE) { + cols <- c(...) + + colors_agora <- c(white = "#FFFFFF", + black = "#000000", + main_bordeaux = "#581522", + main_lt_beige = "#DDD8C4", + main_dk_beige = "#B7AD99", + main_lt_grey = "#BCB8B1") + + if (is.null(cols)) { + cols_to_return <- colors_agora + } else { + cols_to_return <- colors_agora[cols] + } + + if(unnamed){ + cols_to_return <- unname(cols_to_return) + } + + return(cols_to_return) +} diff --git a/R/cols_impact.R b/R/cols_impact.R new file mode 100644 index 0000000..c74bdaf --- /dev/null +++ b/R/cols_impact.R @@ -0,0 +1,30 @@ +#' @title Function to extract IMPACT colors as hex codes +#' +#' @param ... Character names of reach colors. If NULL returns all colors +#' @param unnamed Should the output vector be unnamed? Default to `TRUE` +#' +#' @return An hex code or hex codes named or unnamed +#' +#' @details This function needs to be modified to add colors +#' +#' @export +cols_impact <- function(..., unnamed = TRUE) { + cols <- c(...) + + colors_impact <- c(white = "#FFFFFF", + black = "#000000", + main_blue = "#315975", + main_gray = "#58585A") + + if (is.null(cols)) { + cols_to_return <- colors_impact + } else { + cols_to_return <- colors_impact[cols] + } + + if(unnamed){ + cols_to_return <- unname(cols_to_return) + } + + return(cols_to_return) +} diff --git a/R/cols_reach.R b/R/cols_reach.R new file mode 100644 index 0000000..2957e57 --- /dev/null +++ b/R/cols_reach.R @@ -0,0 +1,168 @@ +#' @title Function to extract REACH colors as hex codes +#' +#' @param ... Character names of reach colors. If NULL returns all colors +#' @param unnamed Should the output vector be unnamed? Default to `TRUE` +#' +#' @return An hex code or hex codes named or unnamed +#' +#' @details This function needs to be modified to add colors +#' +#' @export +cols_reach <- function(..., unnamed = TRUE) { + cols <- c(...) + + colors_reach <- c( + white = "#FFFFFF", + black = "#000000", + main_grey = "#58585A", + main_red = "#EE5859", + main_lt_grey = "#C7C8CA", + main_beige = "#D2CBB8", + iroise_1 = "#DFECEF", + iroise_2 = "#B1D7E0", + iroise_3 = "#699DA3", + iroise_4 = "#236A7A", + iroise_5 = "#0C3842", + red_main_1 = "#AE2829", + red_main_2 = "#D05E5F", + red_main_3 = "#DB9797", + red_main_4 = "#EBC7C8", + red_main_5 = "#FAF2F2", + red_alt_1 = "#792a2e", + red_alt_2 = "#c0474a", + red_alt_3 = "#ee5859", + red_alt_4 = "#f49695", + red_alt_5 = "#f8d6d6", + red_alt_na = "#f8f4f4", + lt_grey_1 = "#C6C6C6", + lt_grey_2 = "#818183", + grey3 = "#E3E3E3", + dk_grey = "#464647", + two_dots_1 = "#706441", + two_dots_2 = "#56b4e9", + two_dots_flashy_1 = "gold1", + two_dots_flashy_2 = "blue2", + three_dots_1 = "aquamarine2", + three_dots_2 = "cornflowerbluer", + three_dots_3 = "brown1", + orpink = "#f8aa9b", + pink = "#f5a6a7", + lt_pink = "#F9C6C7", + hot_pink = "#ef6d6f", + mddk_red = "#bf4749", + dk_red = "#782c2e", + orange = "#F69E61", + lt_green = "#B0CFAC", + green = "#84A181", + dk_green = "#526450", + red_less_4_1 = "#f6e3e3", + red_less_4_2 = "#f3b5b6", + red_less_4_3 = "#ee5a59", + red_less_4_4 = "#9d393c", + red_5_1 = "#f6e3e3", + red_5_2 = "#f3b5b6", + red_5_3 = "#ee5a59", + red_5_4 = "#c0474a", + red_5_5 = "#792a2e", + red_less_7_1 = "#f8f4f4", + red_less_7_2 = "#f8d6d6", + red_less_7_3 = "#f49695", + red_less_7_4 = "#ee5a59", + red_less_7_5 = "#c0474a", + red_less_7_6 = "#792a2e", + red_less_7_7 = "#471119", + green_2_1 = "#cce5c9", + green_2_2 = "#55a065", + green_3_1 = "#e6f2e0", + green_3_2 = "#7ebf85", + green_3_3 = "#2d8246", + green_4_1 = "#e6f2e1", + green_4_2 = "#b0d3ab", + green_4_3 = "#4bab5e", + green_4_4 = "#0c592e", + green_5_1 = "#e6f2e1", + green_5_2 = "#b0d3ab", + green_5_3 = "#6bb26a", + green_5_4 = "#229346", + green_5_5 = "#0c592e", + green_6_1 = "#e6f2e0", + green_6_2 = "#b0d3ab", + green_6_3 = "#75c376", + green_6_4 = "#086d38", + green_6_5 = "#0c592e", + green_6_6 = "#0d4420", + green_7_1 = "#fafafa", + green_7_2 = "#e6f2e0", + green_7_3 = "#b0d3ab", + green_7_4 = "#75c376", + green_7_5 = "#40ab5d", + green_7_6 = "#086d38", + green_7_7 = "#0d4420", + artichoke_2_1 = "#b6c8b1", + artichoke_2_2 = "#53755f", + artichoke_3_1 = "#e4f1db", + artichoke_3_2 = "#89a087", + artichoke_3_3 = "#455843", + artichoke_4_1 = "#e4f1db", + artichoke_4_2 = "#b5ceb2", + artichoke_4_3 = "#89a087", + artichoke_4_4 = "#465944", + artichoke_5_1 = "#e4f1db", + artichoke_5_2 = "#b5ceb2", + artichoke_5_3 = "#89a087", + artichoke_5_4 = "#60755f", + artichoke_5_5 = "#465944", + artichoke_6_1 = "#fafafa", + artichoke_6_2 = "#e4f1db", + artichoke_6_3 = "#b5ceb2", + artichoke_6_4 = "#89a087", + artichoke_6_5 = "#60755f", + artichoke_6_6 = "#455843", + artichoke_7_1 = "#fafafa", + artichoke_7_2 = "#e4f1db", + artichoke_7_3 = "#b5ceb2", + artichoke_7_4 = "#9fb89c", + artichoke_7_5 = "#89a087", + artichoke_7_6 = "#60755f", + artichoke_7_7 = "#455843", + blue_2_1 = "#7cb6c4", + blue_2_2 = "#286877 ", + blue_3_1 = "#b9d7de", + blue_3_2 = "#5ca4b4", + blue_3_3 = "#286877", + blue_4_1 = "#dfecef", + blue_4_2 = "#8fc1cc", + blue_4_3 = "#3f96aa", + blue_4_4 = "#286877", + blue_5_1 = "#dfecef", + blue_5_2 = "#8fc1cc", + blue_5_3 = "#3f96aa", + blue_5_4 = "#256a7a", + blue_5_5 = "#0c3842", + blue_6_1 = "#f4fbfe", + blue_6_2 = "#cfe4e9", + blue_6_3 = "#77b2bf", + blue_6_4 = "#4096aa", + blue_6_5 = "#256a7a", + blue_6_6 = "#0c3842", + blue_7_1 = "#f4fbfe", + blue_7_2 = "#b3d5de", + blue_7_3 = "#77b2bf", + blue_7_4 = "#4096aa", + blue_7_5 = "#27768a", + blue_7_6 = "#0c596b", + blue_7_7 = "#0c3842" + ) + + if (is.null(cols)) { + cols_to_return <- colors_reach + } else { + cols_to_return <- colors_reach[cols] + } + + if (unnamed) { + cols_to_return <- unname(cols_to_return) + } + + return(cols_to_return) +} diff --git a/R/data.R b/R/data.R new file mode 100644 index 0000000..8101ff4 --- /dev/null +++ b/R/data.R @@ -0,0 +1,93 @@ +#' Haïti admin 1 centroids shapefile. +#' +#' A multipoint shapefile of Haiti's admin 1. +#' +#' @format A sf multipoint object with 10 features and 9 fields: +#' \describe{ +#' \item{ADM1_PC}{Admin 1 postal code.} +#' \item{ADM1_EN}{Full name in English.} +#' \item{ADM1_FR}{Full name in French.} +#' \item{ADM1_HT}{Full name in Haitian Creole.} +#' \item{ADM0_EN}{Country name in English.} +#' \item{ADM0_FR}{Country name in French.} +#' \item{ADM0_HT}{Country name in Haitian Creole.} +#' \item{ADM0_PC}{Country postal code.} +#' \item{ADM1_FR_UPPER}{Admin 1 French name - uppercase.} +#' \item{geometry}{Multipoint geometry.} +#' } +"centroid_admin1" + + +#' Indicator admin 1 polygons shapefile. +#' +#' A multipolygon shapefile of Haiti's admin 1 with an indicator column 'opn_dfc'. +#' +#' @format A sf multipoint object with 10 features and 10 fields: +#' \describe{ +#' \item{ADM1_PC}{Admin 1 postal code.} +#' \item{admin1}{Admin 1 unique id.} +#' \item{opn_dfc}{Proportion of HHs that reported open defecation as sanitation facility.} +#' \item{ADM1_EN}{Full name in English.} +#' \item{ADM1_FR}{Full name in French.} +#' \item{ADM1_HT}{Full name in Haitian Creole.} +#' \item{ADM0_EN}{Country name in English.} +#' \item{ADM0_FR}{Country name in French.} +#' \item{ADM0_HT}{Country name in Haitian Creole.} +#' \item{ADM0_PC}{Country postal code.} +#' \item{geometry}{Multipolygon geometry.} +#' } +"indicator_admin1" + + +#' Haïti admin 1 lines shapefile. +#' +#' A multiline shapefile of Haiti's admin 1. +#' +#' @format A sf multiline object with 10 features and 8 fields: +#' \describe{ +#' \item{ADM1_EN}{Full name in English.} +#' \item{ADM1_FR}{Full name in French.} +#' \item{ADM1_HT}{Full name in Haitian Creole.} +#' \item{ADM0_EN}{Country name in English.} +#' \item{ADM0_FR}{Country name in French.} +#' \item{ADM0_HT}{Country name in Haitian Creole.} +#' \item{ADM0_PCODE}{Country postal code.} +#' \item{geometry}{Multiline geometry.} +#' } +"line_admin1" + + +#' Haïti border. +#' +#' A multiline shapefile of Haiti's border. +#' +#' @format A sf multiline objet with 1 feature and 6 fields: +#' \describe{ +#' \item{fid_1}{fid_1} +#' \item{uno}{uno} +#' \item{count}{count} +#' \item{x_coord}{x_coord} +#' \item{y_coord}{y_coord} +#' \item{area}{area} +#' \item{geometry}{Multiline geometry.} +#' } +"border_admin0" + + +#' Haïti frontier with Dominican Republic. +#' +#' A multiline shapefile of Haiti's frontier with Dominican Republic. +#' +#' @format A sf multipoint objet with 4 features and 8 fields: +#' \describe{ +#' \item{fid_1}{fid_1} +#' \item{objectid}{objectid} +#' \item{id}{id} +#' \item{fromnode}{fromnode} +#' \item{tonode}{tonode} +#' \item{leftpolygo}{leftpolygo} +#' \item{rightpolygo}{rightpolygo} +#' \item{shape_leng}{shape_leng} +#' \item{geometry}{Multiline geometry.} +#' } +"frontier_admin0" diff --git a/R/dumbbell.R b/R/dumbbell.R deleted file mode 100644 index e38acda..0000000 --- a/R/dumbbell.R +++ /dev/null @@ -1,211 +0,0 @@ -#' Make dumbbell chart. -#' -#' @param df A data frame. -#' @param col A numeric column. -#' @param group_x The grouping column on the x-axis; only two groups. -#' @param group_y The grouping column on the y-axis. -#' @param point_size Point size. -#' @param point_alpha Point alpha. -#' @param segment_size Segment size. -#' @param segment_color Segment color. -#' @param group_x_title X-group and legend title. -#' @param group_y_title Y-axis and group title. -#' @param x_title X-axis title. -#' @param title Title. -#' @param subtitle Subtitle. -#' @param caption Caption. -#' @param line_to_y_axis TRUE or FALSE; add a line connected points and Y-axis. -#' @param line_to_y_axis_type Line to Y-axis type. -#' @param line_to_y_axis_width Line to Y-axis width. -#' @param line_to_y_axis_color Line to Y-axis color. -#' @param add_text TRUE or FALSE; add text at the points. -#' @param add_text_vjust Vertical adjustment. -#' @param add_text_size Text size. -#' @param add_text_color Text color. -#' @param theme_fun A ggplot2 theme, default to `theme_dumbbell()` -#' @param scale_fill_fun A ggplot2 scale_fill function, default to `scale_fill_visualizer_discrete()` -#' @param scale_color_fun A ggplot2 scale_color function, default to `scale_color_visualizer_discrete()` -#' -#' @return A dumbbell chart. -#' @export -#' -dumbbell <- function( - df, - col, - group_x, - group_y, - point_size = 5, - point_alpha = 1, - segment_size = 2.5, - segment_color = color("light_blue_grey"), - group_x_title = NULL, - group_y_title = NULL, - x_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - line_to_y_axis = FALSE, - line_to_y_axis_type = 3, - line_to_y_axis_width = 0.5, - line_to_y_axis_color = color("dark_grey"), - add_text = FALSE, - add_text_vjust = 2, - add_text_size = 3.5, - add_text_color = color("dark_grey"), - theme_fun = theme_dumbbell(), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete() -) { - #------ Checks - - # df is a data frame - checkmate::assert_data_frame(df) - - # col, group_x, group_y are character - checkmate::assert_character(col, len = 1) - checkmate::assert_character(group_x, len = 1) - checkmate::assert_character(group_y, len = 1) - - # col, group_x, group_y are columns in df - checkmate::assert_choice(col, colnames(df)) - checkmate::assert_choice(group_x, colnames(df)) - checkmate::assert_choice(group_y, colnames(df)) - - # Check numeric/logical values - checkmate::assert_numeric(point_size, len = 1) - checkmate::assert_numeric(point_alpha, lower = 0, upper = 1, len = 1) - checkmate::assert_numeric(segment_size, len = 1) - checkmate::assert_logical(line_to_y_axis, len = 1) - checkmate::assert_numeric(line_to_y_axis_type, len = 1) - checkmate::assert_numeric(line_to_y_axis_width, len = 1) - checkmate::assert_logical(add_text, len = 1) - checkmate::assert_numeric(add_text_vjust, len = 1) - checkmate::assert_numeric(add_text_size, len = 1) - - # Get group keys - group_x_keys <- df |> - dplyr::group_by(!!rlang::sym(group_x)) |> - dplyr::group_keys() |> - dplyr::pull() - - # Check if only two groups - if (length(group_x_keys) > 2) { - rlang::abort( - "Cannot draw a dumbbell plot for `group_x` with more than 2 groups" - ) - } - - # Pivot long data - df_pivot <- df |> - tidyr::pivot_wider( - id_cols = c(!!rlang::sym(group_y)), - values_from = !!rlang::sym(col), - names_from = !!rlang::sym(group_x) - ) - - df_pivot <- df_pivot |> - dplyr::rowwise() |> - dplyr::mutate( - min = min( - !!rlang::sym(group_x_keys[[1]]), - !!rlang::sym(group_x_keys[[2]]), - na.rm = T - ), - max = max( - !!rlang::sym(group_x_keys[[1]]), - !!rlang::sym(group_x_keys[[2]]), - na.rm = T - ) - ) |> - dplyr::ungroup() |> - dplyr::mutate(diff = max - min) - - g <- ggplot2::ggplot(df_pivot) - - # Add line - if (line_to_y_axis) { - xend <- min(dplyr::pull(df, !!rlang::sym(col))) - - g <- g + - ggplot2::geom_segment( - ggplot2::aes( - x = min, - y = !!rlang::sym(group_y), - yend = !!rlang::sym(group_y) - ), - xend = xend, - linetype = line_to_y_axis_type, - linewidth = line_to_y_axis_width, - color = line_to_y_axis_color - ) - } - - # Add segment - g <- g + - ggplot2::geom_segment( - ggplot2::aes( - x = !!rlang::sym(group_x_keys[[1]]), - y = !!rlang::sym(group_y), - xend = !!rlang::sym(group_x_keys[[2]]), - yend = !!rlang::sym(group_y) - ), - linewidth = segment_size, - color = segment_color - ) - - # Add points - g <- g + - ggplot2::geom_point( - data = df, - ggplot2::aes( - x = !!rlang::sym(col), - y = !!rlang::sym(group_y), - color = !!rlang::sym(group_x), - fill = !!rlang::sym(group_x) - ), - size = point_size, - alpha = point_alpha - ) - - # Add title, subtitle, caption, x_title, y_title - g <- g + - ggplot2::labs( - title = title, - subtitle = subtitle, - caption = caption, - x = x_title, - y = group_y_title, - color = group_x_title, - fill = group_x_title - ) - - # Add stat labels to points - if (add_text) { - g <- g + - ggrepel::geom_text_repel( - data = df, - ggplot2::aes( - x = !!rlang::sym(col), - y = !!rlang::sym(group_y), - label = !!rlang::sym(col) - ), - vjust = add_text_vjust, - size = add_text_size, - color = add_text_color - ) - } - - # Add theme - g <- g + theme_fun - - # Add scale fun - if (!is.null(scale_fill_fun)) { - g <- g + scale_fill_fun - } - - if (!is.null(scale_color_fun)) { - g <- g + scale_color_fun - } - - return(g) -} diff --git a/R/internals.R b/R/internals.R index 83bca86..0f145b5 100644 --- a/R/internals.R +++ b/R/internals.R @@ -1,25 +1,95 @@ -# not in -#' Not In Operator +#' @title Abord bad argument #' -#' A negation of the `%in%` operator that tests if elements of `a` are not in `b`. +#' @param arg An argument +#' @param must What arg must be +#' @param not Optional. What arg must not be. #' -#' @param a Vector or value to test -#' @param b Vector to test against -#' -#' @return Logical vector with TRUE for elements of `a` that are not in `b` -`%notin%` <- function(a, b) { - !(a %in% b) +#' @return A stop statement +abort_bad_argument <- function(arg, must, not = NULL) { + msg <- glue::glue("`{arg}` must {must}") + if (!is.null(not)) { + not <- typeof(not) + msg <- glue::glue("{msg}; not {not}.") + } + + rlang::abort("error_bad_argument", + message = msg, + arg = arg, + must = must, + not = not + ) } -# not all in -#' Not All In Operator + + +#' @title Stop statement "If not in colnames" with colnames #' -#' Tests if not all elements of `a` are contained in `b`. +#' @param .tbl A tibble +#' @param cols A vector of column names (quoted) +#' @param df Provide the tibble name as a character string +#' @param arg Default to NULL. #' -#' @param a Vector to test -#' @param b Vector to test against -#' -#' @return TRUE if at least one element of `a` is not in `b`, otherwise FALSE -`%notallin%` <- function(a, b) { - !(all(a %in% b)) +#' @return A stop statement +if_not_in_stop <- function(.tbl, cols, df, arg = NULL){ + if (is.null(arg)) { + msg <- glue::glue("The following column/s is/are missing in `{df}`:") + } + else { + msg <- glue::glue("The following column/s from `{arg}` is/are missing in `{df}`:") + } + if (!all(cols %in% colnames(.tbl))) { + rlang::abort( + c("Missing columns", + "*" = + paste( + msg, + paste( + subvec_not_in(cols, colnames(.tbl)), + collapse = ", ") + ) + ) + ) + } +} + + + +#' @title Stop statement "If not in vector" +#' +#' @param vec A vector of character strings +#' @param cols A set of character strings +#' @param vec_name Provide the vector name as a character string +#' @param arg Default to NULL. +#' +#' @return A stop statement if some elements of vec are not in cols +if_vec_not_in_stop <- function(vec, cols, vec_name, arg = NULL){ + if (is.null(arg)) { + msg <- glue::glue("The following element/s is/are missing in `{vec_name}`:") + } + else { + msg <- glue::glue("The following element/s from `{arg}` is/are missing in `{vec_name}`:") + } + if (!all(cols %in% vec)) { + rlang::abort( + c("Missing elements", + "*" = + paste( + msg, + paste( + subvec_not_in(cols, vec), + collapse = ", ") + ) + ) + ) + } +} + +#' @title Subvec not in +#' +#' @param vector A vector to subset +#' @param set A set-vector +#' +#' @return A subset of vector not in set +subvec_not_in <- function(vector, set){ + vector[!(vector %in% set)] } diff --git a/R/lollipop.R b/R/lollipop.R deleted file mode 100644 index 6d7f292..0000000 --- a/R/lollipop.R +++ /dev/null @@ -1,338 +0,0 @@ -#' @rdname lollipop -#' -#' @inheritParams lollipop -#' @param ... Additional arguments passed to `lollipop()` -#' -#' @export -hlollipop <- function( - ..., - flip = TRUE, - theme_fun = theme_lollipop(flip = flip)) { - lollipop(flip = flip, theme_fun = theme_fun, ...) -} - -#' Simple lollipop chart -#' -#' @description -#' `lollipop()` is a simple lollipop chart (dots connected to the baseline by a segment) with some customization allowed. -#' `hlollipop()` uses `lollipop()` with sane defaults for a horizontal lollipop chart. -#' -#' @param df A data frame. -#' @param x A quoted character column or coercible as a character column. -#' @param y A quoted numeric column. -#' @param group Some quoted grouping categorical column, e.g. administrative areas or population groups. -#' @param facet Some quoted grouping categorical column, e.g. administrative areas or population groups. -#' @param x_rm_na Remove NAs in x? -#' @param y_rm_na Remove NAs in y? -#' @param group_rm_na Remove NAs in group? -#' @param facet_rm_na Remove NAs in facet? -#' @param y_expand Multiplier to expand the y axis. -#' @param add_color Add a color to dots (if no grouping). -#' @param add_color_guide Should a legend be added? -#' @param flip TRUE or FALSE (default). Default to TRUE or horizontal lollipop plot. -#' @param wrap Should x-labels be wrapped? Number of characters. -#' @param alpha Fill transparency for dots. -#' @param x_title The x scale title. Default to NULL. -#' @param y_title The y scale title. Default to NULL. -#' @param group_title The group legend title. Default to NULL. -#' @param title Plot title. Default to NULL. -#' @param subtitle Plot subtitle. Default to NULL. -#' @param caption Plot caption. Default to NULL. -#' @param dot_size The size of the dots. -#' @param line_size The size/width of the line connecting dots to the baseline. -#' @param line_color The color of the line connecting dots to the baseline. -#' @param dodge_width Width for position dodge when using groups (controls space between grouped lollipops). -#' @param theme_fun Whatever theme function. For no custom theme, use theme_fun = NULL. -#' @param scale_fill_fun Scale fill function. Default to scale_fill_visualizer_discrete(). -#' @param scale_color_fun Scale color function. Default to scale_color_visualizer_discrete(). -#' -#' -#' @inheritParams reorder_by -#' -#' @importFrom rlang `:=` -#' -#' @return A ggplot object -#' @export -#' @examples -#' \dontrun{ -#' df <- data.frame(x = letters[1:5], y = c(10, 5, 7, 12, 8)) -#' # Vertical lollipop -#' lollipop(df, "x", "y") -#' # Horizontal lollipop -#' hlollipop(df, "x", "y") -#' } -lollipop <- function( - df, - x, - y, - group = "", - facet = "", - order = "y", - x_rm_na = TRUE, - y_rm_na = TRUE, - group_rm_na = TRUE, - facet_rm_na = TRUE, - y_expand = 0.1, - add_color = color("cat_5_main_1"), - add_color_guide = TRUE, - flip = FALSE, - wrap = NULL, - alpha = 1, - x_title = NULL, - y_title = NULL, - group_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - dot_size = 4, - line_size = 0.8, - line_color = color("dark_grey"), - dodge_width = 0.9, - theme_fun = theme_lollipop( - flip = flip, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5 - ), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete()) { - #------ Checks - - # df is a data frame - checkmate::assert_data_frame(df) - - # x and y and group are character - checkmate::assert_character(x, len = 1) - checkmate::assert_character(y, len = 1) - checkmate::assert_character(group, len = 1) - checkmate::assert_character(facet, len = 1) - - # x and y are columns in df - checkmate::assert_choice(x, colnames(df)) - checkmate::assert_choice(y, colnames(df)) - if (group != "") { - checkmate::assert_choice(group, colnames(df)) - } - if (facet != "") { - checkmate::assert_choice(facet, colnames(df)) - } - - # x_rm_na, y_rm_na and group_rm_na are logical scalar - checkmate::assert_logical(x_rm_na, len = 1) - checkmate::assert_logical(y_rm_na, len = 1) - checkmate::assert_logical(group_rm_na, len = 1) - checkmate::assert_logical(facet_rm_na, len = 1) - - # flip is a logical scalar - checkmate::assert_logical(flip, len = 1) - - # dodge_width is a numeric scalar - checkmate::assert_numeric(dodge_width, len = 1, lower = 0) - - # wrap is a numeric scalar or NULL - if (!is.null(wrap)) { - checkmate::assert_numeric(wrap, len = 1, null.ok = TRUE) - } - - # alpha is a numeric scalar between 0 and 1 - checkmate::assert_numeric(alpha, lower = 0, upper = 1, len = 1) - - # dot_size is a numeric scalar - checkmate::assert_numeric(dot_size, len = 1) - - # line_size is a numeric scalar - checkmate::assert_numeric(line_size, len = 1) - - # order is a character scalar in valid choices - checkmate::assert_choice(order, c("none", "y", "grouped_y", "x", "grouped_x")) - - # x and y are numeric or character - if (class(df[[y]]) %notin% c("integer", "numeric")) { - rlang::abort(paste0(y, " must be numeric.")) - } - if (!any(class(df[[x]]) %in% c("character", "factor"))) { - rlang::abort(paste0(x, " must be character or factor")) - } - - #----- Data wrangling - - # facets over group - if (group != "" && facet != "" && group == facet) { - rlang::warn("'group' and 'facet' are the same identical.") - } - - # remove NAs using base R - if (x_rm_na) { - df <- df[!(is.na(df[[x]])), ] - } - if (y_rm_na) { - df <- df[!(is.na(df[[y]])), ] - } - if (group != "" && group_rm_na) { - df <- df[!(is.na(df[[group]])), ] - } - if (facet != "" && facet_rm_na) { - df <- df[!(is.na(df[[facet]])), ] - } - - # reorder - dir_order <- if (flip && order %in% c("x", "grouped_x")) { - -1 - } else if (!flip && order %in% c("x", "grouped_x")) { - 1 - } else if (flip) { - 1 - } else { - -1 - } - group_order <- if (group != "" || (group == "" && facet == "")) { - group - } else if (group == "" && facet != "") { - facet - } - df <- reorder_by( - df = df, - x = x, - y = y, - group = group_order, - order = order, - dir_order = dir_order - ) - - # prepare aes - if (group != "") { - g <- ggplot2::ggplot( - df, - mapping = ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y), - fill = !!rlang::sym(group), - color = !!rlang::sym(group) - ) - ) - } else { - g <- ggplot2::ggplot( - df, - mapping = ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y) - ) - ) - } - - # add title, subtitle, caption, x_title, y_title - g <- g + - ggplot2::labs( - title = title, - subtitle = subtitle, - caption = caption, - x = y_title, - y = x_title, - color = group_title, - fill = group_title - ) - - # facets - if (facet != "") { - if (flip) { - g <- g + - ggplot2::facet_grid( - rows = ggplot2::vars(!!rlang::sym(facet)), - scales = "free", - space = "free_y" - ) - } else { - g <- g + - ggplot2::facet_grid( - cols = ggplot2::vars(!!rlang::sym(facet)), - scales = "free", - space = "free_x" - ) - } - } - - # Add segments and points - if (group != "") { - # With grouping - use position_dodge for side-by-side display - position_dodge_obj <- ggplot2::position_dodge(width = dodge_width) - - g <- g + - ggplot2::geom_linerange( - mapping = ggplot2::aes( - ymin = 0, - ymax = !!rlang::sym(y), - group = !!rlang::sym(group) - ), - position = position_dodge_obj, - color = line_color, - linewidth = line_size - ) + - ggplot2::geom_point( - position = position_dodge_obj, - size = dot_size, - alpha = alpha - ) - } else { - # Without grouping - g <- g + - ggplot2::geom_linerange( - mapping = ggplot2::aes( - ymin = 0, - ymax = !!rlang::sym(y) - ), - color = line_color, - linewidth = line_size - ) + - ggplot2::geom_point( - size = dot_size, - alpha = alpha, - color = add_color, - fill = add_color - ) - } - - # wrap labels on the x scale? - if (!is.null(wrap)) { - g <- g + ggplot2::scale_x_discrete(labels = scales::label_wrap(wrap)) - } - - # flip coordinates if needed - if (flip) { - g <- g + ggplot2::coord_flip() - } - - # y scale tweaks - g <- g + - ggplot2::scale_y_continuous( - # start at 0 - expand = ggplot2::expansion(mult = c(0, y_expand)), - # remove trailing 0 and choose accuracy of y labels - labels = scales::label_number( - accuracy = 0.1, - drop0trailing = TRUE, - big.mark = "", - decimal.mark = "." - ), - ) - - # remove guides for legend if !add_color_guide - if (!add_color_guide) { - g <- g + ggplot2::guides(fill = "none", color = "none") - } - - # add theme fun - if (!is.null(theme_fun)) { - g <- g + theme_fun - } - - # add scale fun - if (!is.null(scale_fill_fun)) { - g <- g + scale_fill_fun - } - - if (!is.null(scale_color_fun)) { - g <- g + scale_color_fun - } - - return(g) -} diff --git a/R/map.R b/R/map.R new file mode 100644 index 0000000..3e9ac1b --- /dev/null +++ b/R/map.R @@ -0,0 +1,354 @@ + + +#' Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values +#' +#' @param poly Multipolygon shape defined by sf package. +#' @param col Numeric attribute to map. +#' @param buffer A buffer, either one value or a vector of 4 values (left, bottom, right, top). +#' @param n The desire number of classes. +#' @param style Method to process the color scale for continuous numerical variables. See `classInt::classIntervals()` for details. +#' @param palette Vector of fill colors as hexadecimal values. For REACH color palettes, it is possible to use `pal_reach()`. For now,'palette' must be changed manually, accordingly to the number of drawn classes. +#' @param as_count Boolean. When col is a numeric variable, should it be processed as a count variable? For instance, 0, 1-10, 11-20. +#' @param color_na Fill color for missing data. +#' @param text_na Legend text for missing data. +#' @param legend_title Legend title. +#' @param legend_text_separator Text separator for classes. E.g. " to " will give 0, 1 to 10, 11 to 20. +#' @param border_alpha Transparency of the border. +#' @param border_col Color of the border. +#' @param lwd Linewidth of the border. +#' @param ... Other arguments to pass to `tmap::tm_polygons()`. +#' +#' @return A tmap layer. +#' @export +#' +add_indicator_layer <- function( + poly, + col, + buffer = NULL, + n = 5, + style = "pretty", + palette = pal_reach("red_5"), + as_count = TRUE, + color_na = cols_reach("white"), + text_na = "Missing data", + legend_title = "Proportion (%)", + legend_text_separator = " - ", + border_alpha = 1, + border_col = cols_reach("lt_grey_1"), + lwd = 1, + ...){ + + #------ Checks and make valid + + rlang::check_installed("tmap", reason = "Package \"tmap\" needed for `add_indicator_layer()` to work. Please install it.") + + poly <- sf::st_make_valid(poly) + + #------ Other checks + + col_name <- rlang::as_name(rlang::enquo(col)) + if_not_in_stop(poly, col_name, "poly", "col") + + if (!is.numeric(poly[[col_name]])) rlang::abort(glue::glue("{col_name} is not numeric.")) + + + #------ Prepare data + + if(!is.null(buffer)){ buffer <- buffer_bbox(poly, buffer) } else { buffer <- NULL } + + + #------ Polygon layer + + layer <- tmap::tm_shape( + poly, + bbox = buffer + ) + + tmap::tm_polygons( + col = col_name, + n = n, + style = style, + palette = palette, + as.count = as_count, + colorNA = color_na, + textNA = text_na, + title = legend_title, + legend.format = list(text.separator = legend_text_separator), + borderl.col = border_col, + border.alpha = border_alpha, + lwd = lwd, + ... + ) + + return(layer) + +} + + + + +#' Add admin boundaries (lines) and the legend +#' +#' @param lines List of multiline shape defined by sf package. +#' @param colors Vector of hexadecimal codes. Same order as lines. +#' @param labels Vector of labels in the legend. Same order as lines. +#' @param lwds Vector of line widths. Same order as lines. +#' @param title Legend title. +#' @param buffer A buffer, either one value or a vector of 4 values (left, bottom, right, top). +#' @param ... Other arguments to pass to each shape in `tmap::tm_lines()`. +#' +#' @return A tmap layer. +#' @export +#' +add_admin_boundaries <- function(lines, colors, labels, lwds, title = "", buffer = NULL, ...){ + + + #------ Package check + + rlang::check_installed("tmap", reason = "Package \"tmap\" needed for `add_admin_boundaries()` to work. Please install it.") + + + #------ Check that the length of vectors is identical between arguments + + if(!inherits(lines, "list")) rlang::abort("Please provide a list for lines.") + + ll <- list(lines, colors, labels, lwds) + if (!all(sapply(ll,length) == length(ll[[1]]))) rlang::abort("lines, colors, labels, lwds do not all have the same length.") + + + #------ Make valid + + lines <- lapply(lines, \(x) sf::st_make_valid(x)) + + + #------ Prepare legend + legend_lines <- tmap::tm_add_legend("line", + title = title, + col = colors, + lwd = lwds, + labels = labels) + + + #------ Let's go with all line shapes + + if(!is.null(buffer)){ buffer <- buffer_bbox(lines[[1]], buffer) } else { buffer <- NULL } + + + layers <- tmap::tm_shape(lines[[1]], bbox = buffer) + + tmap::tm_lines(lwd = lwds[[1]], col = colors[[1]], ...) + + if (length(lines) == 1) { + + layers <- layers + legend_lines + + return(layers) + + } else { + + for(i in 2:length(lines)){ + + layers <- layers + tmap::tm_shape(shp = lines[[i]]) + tmap::tm_lines(lwd = lwds[[i]], col = colors[[i]], ...) + } + + layers <- layers + legend_lines + + return(layers) + + } +} + + + + +#' Basic defaults based on `tmap::tm_layout()` +#' +#' @param title Map title. +#' @param legend_position Legend position. Not above the map is a good start. +#' @param frame Boolean. Legend frame? +#' @param legend_frame Legend frame color. +#' @param legend_text_size Legend text size in 'pt'. +#' @param legend_title_size Legend title size in 'pt'. +#' @param title_size Title text size in 'pt'. +#' @param title_fontface Title fontface. Bold if you wanna exemplify a lot what it is about. +#' @param title_color Title font color. +#' @param fontfamily Overall fontfamily. Leelawadee is your precious. +#' @param ... Other arguments to pass to `tmap::tm_layout()`. +#' +#' @return A tmap layer. +#' @export +#' +add_layout <- function( + title = NULL, + legend_position = c(0.02, 0.5), + frame = FALSE, + legend_frame = cols_reach("main_grey"), + legend_text_size = 0.6, + legend_title_size = 0.8, + title_size = 0.9, + title_fontface = "bold", + title_color = cols_reach("main_grey"), + # check.and.fix = TRUE, + fontfamily = "Leelawadee", + ...){ + + layout <- tmap::tm_layout( + title = title, + legend.position = legend_position, + legend.frame = legend_frame, + frame = FALSE, + legend.text.size = legend_text_size, + legend.title.size = legend_title_size, + title.size = title_size, + title.fontface = title_fontface, + title.color = title_color, + fontfamily = fontfamily, + ...) + + return(layout) + + } + + + + +#' Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. +#' +#' @param point Multipoint shape defined by sf package. +#' @param text Text labels column. +#' @param size Relative size of the text labels. +#' @param fontface Fontface. +#' @param fontfamily Fontfamily. Leelawadee is your precious. +#' @param shadow Boolean. Add a shadow around text labels. Issue opened on Github to request. +#' @param auto_placement Logical that determines whether the labels are placed automatically. +#' @param remove_overlap Logical that determines whether the overlapping labels are removed. +#' @param ... Other arguments to pass to `tmap::tm_text()`. +#' +#' @return A tmap layer. +#' @export +#' +add_admin_labels <- function(point, + text, + size = 0.5, + fontface = "bold", + fontfamily = "Leelawadee", + shadow = TRUE, + auto_placement = FALSE, + remove_overlap = FALSE, + ...){ + + + #------ Restrictive sf checks (might not be necessary depending on the desired behaviour) + + rlang::check_installed("tmap", reason = "Package \"tmap\" needed for `add_indicator_layer()` to work. Please install it.") + + point <- sf::st_make_valid(point) + + #------ Other checks + + text_name <- rlang::as_name(rlang::enquo(text)) + if_not_in_stop(point, text_name, "point", "text") + + #------ Point text layer + + layer <- tmap::tm_shape(point) + + tmap::tm_text(text = text_name, + size = size, + fontface = fontface, + fontfamily = fontfamily, + shadow = shadow, + auto.placement = auto_placement, + remove.overlap = remove_overlap, + ...) + + return(layer) + +} + + + + +#' Add a compass +#' +#' @param text_size Relative font size. +#' @param position Position of the compass. Vector of two values, specifying the x and y coordinates. +#' @param color_dark Color of the dark parts of the compass. +#' @param text_color color of the text. +#' @param type Compass type, one of: "arrow", "4star", "8star", "radar", "rose". +#' @param ... Other arguments to pass to `tmap::tm_compass()`. +#' +#' @return A tmap layer. +#' @export +#' +add_compass <- function(text_size = 0.6, + position = c("right", 0.8), + color_dark = cols_reach("black"), + text_color = cols_reach("black"), + type = "4star", + ...){ + + compass <- tmap::tm_compass( + text.size = text_size, + position = position, + color.dark = color_dark, + type = type, + text.color = text_color + ) + + return(compass) + +} + + + + +#' Add a scale bar +#' +#' @param text_size Relative font size. +#' @param position Position of the compass. Vector of two values, specifying the x and y coordinates. +#' @param color_dark Color of the dark parts of the compass. +#' @param breaks Breaks of the scale bar. If not specified, breaks will be automatically be chosen given the prefered width of the scale bar. Example: c(0, 50, 100). +#' @param ... Other arguments to pass to `tmap::tm_compass()`. +#' +#' @return A tmap layer. +#' @export +#' +add_scale_bar <- function(text_size = 0.6, + position = c("left", 0.01), + color_dark = cols_reach("black"), + breaks = c(0, 50, 100), + ...){ + + scale_bar <- tmap::tm_scale_bar( + text.size = text_size, + position = position, + color.dark = color_dark, + breaks = breaks, + ... + ) + + return(scale_bar) + +} + + + + +#' Do you want to credit someone or some institution? +#' +#' @param text Text. +#' @param size Relative text size. +#' @param bg_color Background color. +#' @param position Position. Vector of two coordinates. Usually somewhere down. +#' @param ... Other arguments to pass to `tmap::tm_credits()`. +#' +#' @return A tmap layer. +#' @export +#' +add_credits <- function(text, size = 0.4, bg_color = NA, position = c(0.75, 0.02), ...){ + + tmap::tm_credits(text, + size = size, + bg.color = bg_color, + position = position, + ...) +} + diff --git a/R/pal_agora.R b/R/pal_agora.R new file mode 100644 index 0000000..90f08a6 --- /dev/null +++ b/R/pal_agora.R @@ -0,0 +1,40 @@ +#' @title Return function to interpolate an AGORA color palette +#' +#' @param palette Character name of a palette in AGORA palettes +#' @param reverse Boolean indicating whether the palette should be reversed +#' @param color_ramp_palette Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the former with `TRUE` +#' @param show_palettes Should the ouput be the set of palettes names to pick from? Default to `FALSE` +#' @param ... Additional arguments to pass to colorRampPalette() +#' +#' @return A color palette +#' +#' @export +pal_agora <- function(palette = "main", reverse = FALSE, color_ramp_palette = FALSE, show_palettes = FALSE, ...) { + + + palettes_agora <- list( + `main` = cols_agora("main_grey", "main_red", "main_lt_grey", "main_beige"), + `primary` = cols_agora("main_grey", "main_red"), + `secondary` = cols_agora("main_lt_grey", "main_beige"), + `two_dots` = cols_agora("two_dots_1", "two_dots_2"), + `two_dots_flashy` = cols_agora("two_dots_flashy_1", "two_dots_flashy_2"), + `red_main` = cols_agora("red_main_1", "red_main_2", "red_main_3", "red_main_4", "red_main_5"), + `red_alt` = cols_agora("red_alt_1", "red_alt_2", "red_alt_3", "red_alt_4", "red_alt_5"), + `iroise` = cols_agora("iroise_1", "iroise_2", "iroise_3", "iroise_4", "iroise_5"), + `discrete_6` = cols_agora("dk_grey", "red_main_1", "main_beige", "red_main_2", "lt_grey_2", "red_4") + ) + + if (show_palettes) return(names(palettes_agora)) + + pal <- palettes_agora[[palette]] + + if (reverse) pal <- rev(pal) + + if (color_ramp_palette) { + rlang::check_installed("grDevices", reason = "Package \"grDevices\" needed for `pal_agora()` woth 'color_ramp_palette' set to `TRUE` to work. Please install it.") + + pal <- grDevices::colorRampPalette(pal, ...) + } + + return(pal) +} diff --git a/R/pal_impact.R b/R/pal_impact.R new file mode 100644 index 0000000..ff9b561 --- /dev/null +++ b/R/pal_impact.R @@ -0,0 +1,34 @@ +#' @title Return function to interpolate an IMPACT color palette +#' +#' @param palette Character name of a palette in IMPACT palettes +#' @param reverse Boolean indicating whether the palette should be reversed +#' @param color_ramp_palette Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the former with `TRUE` +#' @param show_palettes Should the ouput be the set of palettes names to pick from? Default to `FALSE` +#' @param ... Additional arguments to pass to colorRampPalette() +#' +#' @return A color palette +#' +#' @export +pal_impact <- function(palette = "main", reverse = FALSE, color_ramp_palette = FALSE, show_palettes = FALSE, ...) { + + + palettes_impact <- list( + `main` = cols_impact("black", "white", "main_blue", "main_grey"), + `primary` = cols_impact("black", "white"), + `secondary` = cols_impact("main_blue", "main_grey") + ) + + if (show_palettes) return(names(palettes_impact)) + + pal <- palettes_impact[[palette]] + + if (reverse) pal <- rev(pal) + + if (color_ramp_palette) { + rlang::check_installed("grDevices", reason = "Package \"grDevices\" needed for `pal_impact()` woth 'color_ramp_palette' set to `TRUE` to work. Please install it.") + + pal <- grDevices::colorRampPalette(pal, ...) + } + + return(pal) +} diff --git a/R/pal_reach.R b/R/pal_reach.R new file mode 100644 index 0000000..7472c08 --- /dev/null +++ b/R/pal_reach.R @@ -0,0 +1,66 @@ +#' @title Return function to interpolate a REACH color palette +#' +#' @param palette Character name of a palette in REACH palettes +#' @param reverse Boolean indicating whether the palette should be reversed +#' @param color_ramp_palette Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the former with `TRUE` +#' @param show_palettes Should the ouput be the set of palettes names to pick from? Default to `FALSE` +#' @param ... Additional arguments to pass to colorRampPalette() +#' +#' @return A color palette +#' +#' @export +pal_reach <- function(palette = "main", reverse = FALSE, color_ramp_palette = FALSE, show_palettes = FALSE, ...) { + + palettes_reach <- list( + `main` = cols_reach("main_grey", "main_red", "main_lt_grey", "main_beige"), + `primary` = cols_reach("main_grey", "main_red"), + `secondary` = cols_reach("main_lt_grey", "main_beige"), + `two_dots` = cols_reach("two_dots_1", "two_dots_2"), + `two_dots_flashy` = cols_reach("two_dots_flashy_1", "two_dots_flashy_2"), + `red_main` = cols_reach("red_main_1", "red_main_2", "red_main_3", "red_main_4", "red_main_5"), + `red_main_5` = cols_reach("red_main_1", "red_main_2", "red_main_3", "red_main_4", "red_main_5"), + `red_alt` = cols_reach("red_alt_1", "red_alt_2", "red_alt_3", "red_alt_4", "red_alt_5"), + `red_alt_5` = cols_reach("red_alt_1", "red_alt_2", "red_alt_3", "red_alt_4", "red_alt_5"), + `iroise` = cols_reach("iroise_1", "iroise_2", "iroise_3", "iroise_4", "iroise_5"), + `iroise_5` = cols_reach("iroise_1", "iroise_2", "iroise_3", "iroise_4", "iroise_5"), + `discrete_6` = cols_reach("dk_grey", "red_main_1", "main_beige", "red_main_2", "lt_grey_2", "red_4"), + `red_2` = cols_reach("red_less_4_1", "red_less_4_3"), + `red_3` = cols_reach("red_less_4_1", "red_less_4_2", "red_less_4_3"), + `red_4` = cols_reach("red_less_4_1", "red_less_4_2", "red_less_4_3", "red_less_4_4"), + `red_5` = cols_reach("red_5_1", "red_5_2", "red_5_3", "red_5_4", "red_5_5"), + `red_6` = cols_reach("red_less_7_1", "red_less_2", "red_less_7_3", "red_less_7_4", "red_less_7_5", "red_less_7_6"), + `red_7` = cols_reach("red_less_7_1", "red_less_7_2", "red_less_7_3", "red_less_7_4", "red_less_7_5", "red_less_7_6", "red_less_7_7"), + `green_2` = cols_reach("green_2_1", "green_2_2"), + `green_3` = cols_reach("green_3_1", "green_3_2", "green_3_3"), + `green_4` = cols_reach("green_4_1", "green_4_2", "green_4_3", "green_4_4"), + `green_5` = cols_reach("green_5_1", "green_5_2", "green_5_3", "green_5_4", "green_5_5"), + `green_6` = cols_reach("green_6_1", "green_6_2", "green_6_3", "green_6_4", "green_6_5", "green_6_6"), + `green_7` = cols_reach("green_7_1", "green_7_2", "green_7_3", "green_7_4", "green_7_5", "green_7_6", "green_7_7"), + `artichoke_2` = cols_reach("artichoke_2_1", "artichoke_2_2"), + `artichoke_3` = cols_reach("artichoke_3_1", "artichoke_3_2", "artichoke_3_3"), + `artichoke_4` = cols_reach("artichoke_4_1", "artichoke_4_2", "artichoke_4_3", "artichoke_4_4"), + `artichoke_5` = cols_reach("artichoke_5_1", "artichoke_5_2", "artichoke_5_3", "artichoke_5_4", "artichoke_5_5"), + `artichoke_6` = cols_reach("artichoke_6_1", "artichoke_6_2", "artichoke_6_3", "artichoke_6_4", "artichoke_6_5", "artichoke_6_6"), + `artichoke_7` = cols_reach("artichoke_7_1", "artichoke_7_2", "artichoke_7_3", "artichoke_7_4", "artichoke_7_5", "artichoke_7_6", "artichoke_7_7"), + `blue_2` = cols_reach("blue_2_1", "blue_2_2"), + `blue_3` = cols_reach("blue_3_1", "blue_3_2", "blue_3_3"), + `blue_4` = cols_reach("blue_4_1", "blue_4_2", "blue_4_3", "blue_4_4"), + `blue_5` = cols_reach("blue_5_1", "blue_5_2", "blue_5_3", "blue_5_4", "blue_5_5"), + `blue_6` = cols_reach("blue_6_1", "blue_6_2", "blue_6_3", "blue_6_4", "blue_6_5", "blue_6_6"), + `blue_7` = cols_reach("blue_7_1", "blue_7_2", "blue_7_3", "blue_7_4", "blue_7_5", "blue_7_6", "blue_7_7") + ) + + if (show_palettes) return(names(palettes_reach)) + + pal <- palettes_reach[[palette]] + + if (reverse) pal <- rev(pal) + + if (color_ramp_palette) { + rlang::check_installed("grDevices", reason = "Package \"grDevices\" needed for `pal_reach()` with 'color_ramp_palette' set to `TRUE` to work. Please install it.") + + pal <- grDevices::colorRampPalette(pal, ...) + } + + return(pal) +} diff --git a/R/palette.R b/R/palette.R deleted file mode 100644 index 9ff3184..0000000 --- a/R/palette.R +++ /dev/null @@ -1,81 +0,0 @@ -#' @title Interpolate a color palette -#' -#' @param palette Character name of a palette in palettes -#' @param reverse Boolean indicating whether the palette should be reversed -#' @param show_palettes Should the ouput be the set of palettes names to pick from? Default to `FALSE` -#' @param ... Additional arguments to pass to colorRampPalette() -#' -#' @return A color palette -#' -#' @export -palette <- function( - palette = "cat_5_main", - reverse = FALSE, - show_palettes = FALSE, - ... -) { - #------ Checks - - # palette is a character scalar - checkmate::assert_character(palette, len = 1) - - # reverse is a logical scalar - checkmate::assert_logical(reverse, len = 1) - - # show_palettes is a logical scalar - checkmate::assert_logical(show_palettes, len = 1) - - #------ Get colors - - # Define palettes - pals <- list( - cat_2_yellow = color_pattern("cat_2_yellow"), - cat_2_light = color_pattern("cat_2_light"), - cat_2_green = color_pattern("cat_2_green"), - cat_2_blue = color_pattern("cat_2_blue"), - cat_5_main = color_pattern("cat_5_main"), - cat_5_ibm = color_pattern("cat_5_ibm"), - cat_3_aquamarine = color_pattern("cat_3_aquamarine"), - cat_3_tol_high_contrast = color_pattern("cat_3_tol_high_contrast"), - cat_8_tol_adapted = color_pattern("cat_8_tol_adapted"), - cat_3_custom_1 = c("#003F5C", "#58508D", "#FFA600"), - cat_4_custom_1 = c("#003F5C", "#7a5195", "#ef5675", "#ffa600"), - cat_5_custom_1 = c("#003F5C", "#58508d", "#bc5090", "#ff6361", "#ffa600"), - cat_6_custom_1 = c( - "#003F5C", - "#444e86", - "#955196", - "#dd5182", - "#ff6e54", - "#ffa600" - ), - div_5_orange_blue = color_pattern("div_5_orange_blue"), - div_5_green_purple = color_pattern("div_5_green_purple") - ) - - # Return if show palettes - if (show_palettes) { - return(names(pals)) - } - - # palette is in pals - if (palette %notin% names(pals)) { - rlang::abort(c( - "Palette not defined", - "*" = glue::glue( - "Palette `{palette}` is not defined in the `palettes` list." - ), - "i" = "Use `palette(show_palettes = TRUE)` to see all available palettes." - )) - } - - #------ Get palette - - pal <- pals[[palette]] - - if (reverse) { - pal <- rev(pal) - } - - return(pal) -} diff --git a/R/palette_gen.R b/R/palette_gen.R deleted file mode 100644 index dcbffe9..0000000 --- a/R/palette_gen.R +++ /dev/null @@ -1,79 +0,0 @@ -#' Generate color palettes -#' -#' [palette_gen()] generates a color palette and let you choose whether continuous or discrete. [palette_gen_categorical()] and [palette_gen_sequential()] generates respectively discrete and continuous palettes. -#' -#' @param palette Palette name from [palette()]. -#' @param type "categorical" or "sequential" or "divergent". -#' @param direction 1 or -1; should the order of colors be reversed? -#' @param ... Additional arguments to pass to [colorRampPalette()] when type is "continuous". -#' -#' @export -palette_gen <- function(palette, type, direction = 1, ...) { - #------ Checks - - checkmate::assert_string(palette) - checkmate::assert_choice(type, c("categorical", "sequential", "divergent")) - checkmate::assert_number(direction, lower = -1, upper = 1) - checkmate::assert_true(abs(direction) == 1) - - if (type == "categorical") { - return(palette_gen_categorical(palette = palette, direction = direction)) - } - - if (type %in% c("sequential", "divergent")) { - return(palette_gen_sequential( - palette = palette, - direction = direction, - ... - )) - } -} - - -#' @rdname palette_gen -#' -#' @export -palette_gen_categorical <- function(palette = "cat_5_main", direction = 1) { - #------ Checks - - checkmate::assert_string(palette) - checkmate::assert_number(direction, lower = -1, upper = 1) - checkmate::assert_true(abs(direction) == 1) - - pal <- palette(palette) - - f <- function(n) { - if (is.null(n)) { - n <- length(pal) - } - - if (n > length(pal)) { - rlang::warn("Not enough colors in this palette!") - } - - pal <- if (direction == 1) pal else rev(pal) - - pal <- pal[1:n] - - return(pal) - } - - return(f) -} - -#' @rdname palette_gen -#' -#' @export -palette_gen_sequential <- function(palette = "cat_5_main", direction = 1, ...) { - #------ Checks - - checkmate::assert_string(palette) - checkmate::assert_number(direction, lower = -1, upper = 1) - checkmate::assert_true(abs(direction) == 1) - - pal <- palette(palette) - - pal <- if (direction == 1) pal else rev(pal) - - grDevices::colorRampPalette(pal, ...) -} diff --git a/R/point.R b/R/point.R index 6092f94..7e7b551 100644 --- a/R/point.R +++ b/R/point.R @@ -1,211 +1,64 @@ -#' @title Simple scatterplot +#' @title Simple point chart #' #' @param df A data frame. -#' @param x A quoted numeric column. -#' @param y A quoted numeric column. -#' @param group Some quoted grouping categorical column, e.g. administrative areas or population groups. -#' @param facet Some quoted grouping categorical column. -#' @param facet_scales Character. Either "free" (default) or "fixed" for facet scales. -#' @param x_rm_na Remove NAs in x? -#' @param y_rm_na Remove NAs in y? -#' @param group_rm_na Remove NAs in group? -#' @param facet_rm_na Remove NAs in facet? -#' @param add_color Add a color to points (if no grouping). -#' @param add_color_guide Should a legend be added? -#' @param flip TRUE or FALSE. -#' @param alpha Fill transparency. -#' @param size Point size. +#' @param x A numeric column. +#' @param y A character column or coercible as a character column. +#' @param group Some grouping categorical column, e.g. administrative areas or population groups. +#' @param palette Palette name from 'pal_reach()'. +#' @param reverse Boolean indicating whether the palette should be reversed. +#' @param family The font family for all plot's texts. Default to "Leelawadee". +#' @param alpha Transparency. +#' @param size Dot size. Default to 1.5. #' @param x_title The x scale title. Default to NULL. #' @param y_title The y scale title. Default to NULL. #' @param group_title The group legend title. Default to NULL. #' @param title Plot title. Default to NULL. #' @param subtitle Plot subtitle. Default to NULL. -#' @param caption Plot caption. Default to NULL. -#' @param theme_fun Whatever theme. Default to theme_point(). NULL if no theming needed. -#' @param scale_fill_fun Scale fill function. Default to scale_fill_visualizer_discrete(). -#' @param scale_color_fun Scale color function. Default to scale_color_visualizer_discrete(). +#' @param caption Caption title string. Default to NULL. +#' @param text_size The size of all text other than the title, subtitle and caption. Defaults to 10. +#' @param title_size The size of the title text. Defaults to 14. +#' @param legend_position Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none". +#' @param ... Other arguments to be passed to "ggblanket::gg_col" +#' +#' @description `ggblanket` as internals for deciding whether the bar chart is horizontally readable. +#' +#' @return A bar chart #' #' @export -point <- function( - df, - x, - y, - group = "", - facet = "", - facet_scales = "free", - x_rm_na = TRUE, - y_rm_na = TRUE, - group_rm_na = TRUE, - facet_rm_na = TRUE, - add_color = color("cat_5_main_1"), - add_color_guide = TRUE, - flip = TRUE, - alpha = 1, - size = 2, - x_title = NULL, - y_title = NULL, - group_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - theme_fun = theme_point(), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete()) { - #------ Checks +point_reach <- function(df, x, y, group = NULL, palette = "main", reverse = FALSE, family = "Leelawadee", alpha = 1, size = 1.5, x_title = NULL, y_title = NULL, group_title = NULL, title = NULL, subtitle = NULL, caption = NULL, text_size = 10, title_size = 14, legend_position = "right", ...){ - # df is a data frame - checkmate::assert_data_frame(df) + pal <- pal_reach(palette) - # x and y and group are character - checkmate::assert_character(x, len = 1) - checkmate::assert_character(y, len = 1) - checkmate::assert_character(group, len = 1) - - # x and y are columns in df - checkmate::assert_choice(x, colnames(df)) - checkmate::assert_choice(y, colnames(df)) - if (group != "") { - checkmate::assert_choice(group, colnames(df)) - } - - # x_rm_na, y_rm_na and group_rm_na are logical scalar - checkmate::assert_logical(x_rm_na, len = 1) - checkmate::assert_logical(y_rm_na, len = 1) - checkmate::assert_logical(group_rm_na, len = 1) - checkmate::assert_logical(facet_rm_na, len = 1) - - # facet_scales is a character scalar in c("free", "fixed") - checkmate::assert_choice(facet_scales, c("free", "fixed")) - - # flip is a logical scalar - checkmate::assert_logical(flip, len = 1) - - # alpha is a numeric scalar between 0 and 1 - checkmate::assert_numeric(alpha, lower = 0, upper = 1, len = 1) - - # size is a numeric scalar - checkmate::assert_numeric(size, len = 1) - - # x and y are numeric - if (!any(c("numeric", "integer") %in% class(df[[x]]))) { - rlang::abort(paste0(x, " must be numeric.")) - } - if (!any(c("numeric", "integer") %in% class(df[[y]]))) { - rlang::abort(paste0(y, " must be numeric.")) - } - - #----- Data wrangling - - # facets over group - if (group != "" && facet != "" && group == facet) { - rlang::warn("'group' and 'facet' are the same identical.") - } - - # remove NAs using base R - if (x_rm_na) { - df <- df[!(is.na(df[[x]])), ] - } - if (y_rm_na) { - df <- df[!(is.na(df[[y]])), ] - } - if (group != "" && group_rm_na) { - df <- df[!(is.na(df[[group]])), ] - } - if (facet != "" && facet_rm_na) { - df <- df[!(is.na(df[[facet]])), ] - } - - # prepare aes - if (group != "") { - g <- ggplot2::ggplot( - df, - mapping = ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y), - fill = !!rlang::sym(group), - color = !!rlang::sym(group) - ) + if(is.null(pal)) rlang::warn( + c(paste0("There is no palette '", palette, "' for initiative 'reach'. Fallback to ggblanket's default color palette."), + "i" = paste0("Use `pal_reach(show_palettes = T)` to see the list of availabale palettes.") ) - } else { - g <- ggplot2::ggplot( - df, - mapping = ggplot2::aes( - x = !!rlang::sym(x), - y = !!rlang::sym(y) - ) - ) - } + ) - # add title, subtitle, caption, x_title, y_title - g <- g + - ggplot2::labs( - title = title, - subtitle = subtitle, - caption = caption, - x = x_title, - y = y_title, - color = group_title, - fill = group_title + pl <- df |> + ggblanket::gg_point(x = {{ x }}, + y = {{ y }}, + col = {{ group }}, + x_title = x_title, + y_title = y_title, + col_title = group_title, + alpha = alpha, + size = size, + title = title, + subtitle = subtitle, + caption = caption, + col_legend_place = legend_position, + theme = theme_reach( + palette = palette, + reverse = reverse, + family = family, + text_size = text_size, + title_size = title_size, + plot_background_pal = "#FFFFFF", + panel_background_pal = "#FFFFFF" + ), + ... ) - # facets - # facets - if (facet != "") { - if (flip) { - g <- g + - ggplot2::facet_grid( - rows = ggplot2::vars(!!rlang::sym(facet)), - scales = facet_scales, - space = if (facet_scales == "free") "free_y" else "fixed" - ) - } else { - g <- g + - ggplot2::facet_grid( - cols = ggplot2::vars(!!rlang::sym(facet)), - scales = facet_scales, - space = if (facet_scales == "free") "free_x" else "fixed" - ) - } - } - - # Should the graph use position_fill? - if (group != "") { - g <- g + - ggplot2::geom_point( - alpha = alpha, - size = size - ) - } else { - g <- g + - ggplot2::geom_point( - alpha = alpha, - size = size, - color = add_color - ) - } - - if (flip) { - g <- g + ggplot2::coord_flip() - } - - # Remove guides for legend if !add_color_guide - if (!add_color_guide) { - g <- g + ggplot2::guides(fill = "none", color = "none") - } - - # Add theme - if (!is.null(theme_fun)) { - g <- g + theme_fun - } - - # Add scale fun - if (!is.null(scale_fill_fun)) { - g <- g + scale_fill_fun - } - - if (!is.null(scale_color_fun)) { - g <- g + scale_color_fun - } - - return(g) + return(pl) } diff --git a/R/reorder_by.R b/R/reorder_by.R deleted file mode 100644 index f918cc7..0000000 --- a/R/reorder_by.R +++ /dev/null @@ -1,108 +0,0 @@ -#' Reorder a Data Frame -#' -#' @param df A data frame to be reordered. -#' @param x A character scalar specifying the column to be reordered. -#' @param y A character scalar specifying the column to order by if ordering by values. -#' @param group A character scalar specifying the grouping column (optional). -#' @param order A character scalar specifying the order type (one of "none", "y", "grouped"). See details. -#' @param dir_order A logical scalar specifying whether to flip the order. -#' -#' @details Ordering takes the following possible values: -#' -#' * "none": No reordering. -#' * "y": Order by values of y. -#' * "grouped_y": Order by values of y and group. -#' * "x": Order alphabetically by x. -#' * "grouped_x": Order alphabetically by x and group. -#' -#' -#' @return The reordered data frame. -#' -#' @examples -#' # Example usage -#' df <- data.frame(col1 = c("b", "a", "c"), col2 = c(10, 25, 3)) -#' reorder_by(df, "col1", "col2") -#' -#' @export -reorder_by <- function(df, x, y, group = "", order = "y", dir_order = 1) { - #------ Checks - - # df is a data frame - checkmate::assert_data_frame(df) - - # x and y are character scalar and in df - checkmate::assert_character(x, len = 1) - checkmate::assert_character(y, len = 1) - checkmate::assert_subset(x, colnames(df)) - checkmate::assert_subset(y, colnames(df)) - - # group is character scalar and in df if not empty - checkmate::assert_character(group, len = 1) - if (group != "") { - checkmate::assert_subset(group, colnames(df)) - } - - # order is a character scalar in c("none", "y", "grouped") - checkmate::assert_choice(order, c("none", "y", "grouped_y", "x", "grouped_x")) - - # dir_order is 1 or -1 (numeric scalar) - checkmate::assert_subset(dir_order, c(1, -1)) - - # Convert dir_order to decreasing logical flag - dir_order_lgl <- (dir_order == -1) - - #------ Reorder - - # droplevels first - if (is.factor(df[[x]])) { - df[[x]] <- droplevels(df[[x]]) - } - - # reording options - if (order == "y") { - # Order by values of y - df <- df[order(df[[y]], decreasing = dir_order_lgl), ] - df[[x]] <- forcats::fct_inorder(df[[x]]) - } else if (order == "grouped_y" && group != "") { - # Order by group first, then by values of y - df <- df[ - order( - df[[group]], - df[[y]], - decreasing = c(FALSE, dir_order_lgl), - method = "radix" - ), - ] - df[[x]] <- forcats::fct_inorder(df[[x]]) - } else if (order == "grouped_y" && group == "") { - # Fallback to ordering by y if group is empty - rlang::warn("Group is empty. Ordering by y only.") - df <- df[order(df[[y]], decreasing = dir_order_lgl), ] - df[[x]] <- forcats::fct_inorder(df[[x]]) - } else if (order == "x") { - # Order alphabetically by x - df <- df[order(df[[x]], decreasing = dir_order_lgl), ] - df[[x]] <- forcats::fct_inorder(df[[x]]) - } else if (order == "grouped_x" && group != "") { - # Order by group first, then alphabetically by x - df <- df[ - order( - df[[group]], - df[[x]], - decreasing = c(FALSE, dir_order_lgl), - method = "radix" - ), - ] - df[[x]] <- forcats::fct_inorder(df[[x]]) - } else if (order == "grouped_x" && group == "") { - # Fallback to ordering by x if group is empty - rlang::warn("Group is empty. Ordering by x only.") - df <- df[order(df[[x]], decreasing = dir_order_lgl), ] - df[[x]] <- forcats::fct_inorder(df[[x]]) - } - - # Reset row names - rownames(df) <- NULL - - return(df) -} diff --git a/R/scale.R b/R/scale.R index a76d98d..8dec956 100644 --- a/R/scale.R +++ b/R/scale.R @@ -1,157 +1,118 @@ -#' Scale constructors for fill and colors -#' -#' This function is based on [palette()]. If palette is NULL, the used palette will be magma from gpplot2's viridis scale constructors. -#' -#' @inheritParams palette_gen +#' Color scale constructor for REACH or AGORA colors #' +#' @param initiative Either "reach" or "agora. +#' @param palette Palette name from `pal_reach()` or `pal_agora()`. +#' @param discrete Boolean indicating whether color aesthetic is discrete or not. +#' @param reverse Boolean indicating whether the palette should be reversed. #' @param reverse_guide Boolean indicating whether the guide should be reversed. -#' @param title_position Position of the title. See [ggplot2::guide_legend()]'s title.position argument. -#' @param ... Additional arguments passed to [ggplot2::discrete_scale()] if discrete or [ggplot2::scale_fill_gradient()] if continuous. +#' @param ... Additional arguments passed to discrete_scale() or +#' scale_fill_gradient(), used respectively when discrete is TRUE or FALSE. +#' +#' @return A color scale for ggplot #' #' @export -scale_color_visualizer_discrete <- function( - palette = "cat_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ...) { - if (!(is.null(palette))) { - ggplot2::discrete_scale( - "color", - palette = palette_gen(palette, "categorical", direction), - guide = ggplot2::guide_legend( - title.position = title_position, - draw.ulim = TRUE, - draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... +scale_color <- function(initiative = "reach", palette = "main", discrete = TRUE, reverse = FALSE, reverse_guide = TRUE, ...) { + + if (initiative == "reach") { + pal <- pal_reach( + palette = palette, + reverse = reverse, + color_ramp_palette = TRUE, + show_palettes = FALSE + ) + } else if (initiative == "agora") { + pal <- pal_agora( + palette = palette, + reverse = reverse, + color_ramp_palette = TRUE, + show_palettes = FALSE ) } else { - ggplot2::scale_colour_viridis_d( - direction = direction, + rlang::abort(c("Wrong initiative parameter input", "*" = paste0(initiative, "is not an option"), "i" = "Parameter 'initiative' should be one of 'reach' or 'agora'")) + } + + if (discrete) { + ggplot2::discrete_scale( + "colour", + paste0(initiative, "_", palette), + palette = pal, guide = ggplot2::guide_legend( - title.position = title_position, + title.position = "top", draw.ulim = TRUE, draw.llim = TRUE, - # ticks.colour = "#F1F3F5", + ticks.colour = "#F1F3F5", + reverse = reverse_guide), + ...) + } else { + ggplot2::scale_color_gradientn( + colours = pal(256), + guide = ggplot2::guide_colorbar( + title.position = "top", + draw.ulim = TRUE, + draw.llim = TRUE, + ticks.colour = "#F1F3F5", reverse = reverse_guide ), - ... - ) + ...) } } -#' @rdname scale_color_visualizer_discrete + + +#' Fill scale constructor for REACH or AGORA colors +#' +#' @param initiative Either "reach" or "agora. +#' @param palette Palette name from `pal_reach()` or `pal_agora()`. +#' @param discrete Boolean indicating whether color aesthetic is discrete or not. +#' @param reverse Boolean indicating whether the palette should be reversed. +#' @param reverse_guide Boolean indicating whether the guide should be reversed. +#' @param ... Additional arguments passed to discrete_scale() or +#' scale_fill_gradient(), used respectively when discrete is TRUE or FALSE. +#' +#' @return A fill scale for ggplot. #' #' @export -scale_fill_visualizer_discrete <- function( - palette = "cat_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ...) { - if (!(is.null(palette))) { +scale_fill <- function(initiative = "reach", palette = "main", discrete = TRUE, reverse = FALSE, reverse_guide = TRUE, ...) { + + if (initiative == "reach") { + pal <- pal_reach( + palette = palette, + reverse = reverse, + color_ramp_palette = TRUE, + show_palettes = FALSE + ) + } else if (initiative == "agora") { + pal <- pal_agora( + palette = palette, + reverse = reverse, + color_ramp_palette = TRUE, + show_palettes = FALSE + ) + } else { + rlang::abort(c("Wrong initiative parameter input", "*" = paste0(initiative, "is not an option"), "i" = "Parameter 'initiative' should be one of 'reach' or 'agora'")) + } + + if (discrete) { ggplot2::discrete_scale( "fill", - palette = palette_gen(palette, "categorical", direction), + paste0(initiative, "_", palette), + palette = pal, guide = ggplot2::guide_legend( - title.position = title_position, + title.position = "top", draw.ulim = TRUE, draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... - ) + ticks.colour = "#F1F3F5", + reverse = reverse_guide), + ...) } else { - ggplot2::scale_fill_viridis_d( - direction = direction, - guide = ggplot2::guide_legend( - title.position = title_position, - draw.ulim = TRUE, - draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... - ) - } -} - -#' @rdname scale_color_visualizer_discrete -#' -#' @export -scale_fill_visualizer_continuous <- function( - palette = "seq_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ...) { - if (!(is.null(palette))) { - pal <- palette_gen(palette, "continuous", direction) - ggplot2::scale_fill_gradientn( - colors = pal(256), + colours = pal(256), guide = ggplot2::guide_colorbar( - title.position = title_position, + title.position = "top", draw.ulim = TRUE, draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... - ) - } else { - ggplot2::scale_fill_viridis_c( - option = "magma", - guide = ggplot2::guide_colorbar( - title.position = title_position, - draw.ulim = TRUE, - draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... - ) - } -} - -#' @rdname scale_color_visualizer_discrete -#' -#' @export -scale_color_visualizer_continuous <- function( - palette = "seq_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ...) { - if (!(is.null(palette))) { - pal <- palette_gen(palette, "continuous", direction) - - ggplot2::scale_fill_gradientn( - colors = pal(256), - guide = ggplot2::guide_colorbar( - title.position = title_position, - draw.ulim = TRUE, - draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... - ) - } else { - ggplot2::scale_colour_viridis_c( - option = "magma", - guide = ggplot2::guide_colorbar( - title.position = title_position, - draw.ulim = TRUE, - draw.llim = TRUE, - # ticks.colour = "#F1F3F5", - reverse = reverse_guide - ), - ... - ) + ticks.colour = "#F1F3F5", + reverse = reverse_guide), + ...) } } diff --git a/R/test.R b/R/test.R new file mode 100644 index 0000000..c8d5447 --- /dev/null +++ b/R/test.R @@ -0,0 +1,257 @@ +library(ggplot2) +library(visualizeR) +# install.packages('ggsn') +library(ggsn) +# install.packages("ggspatial") +library(ggspatial) +# install.packages("ggrepel") +library(ggrepel) + +remotes::install_github("coolbutuseless/ggpattern") +library(ggpattern) + +# library(remotes) +# remotes::install_version("Rttf2pt1", version = "1.3.8") +# library(Rttf2pt1) +# extrafont::font_import() +extrafont::loadfonts() + +library(classInt) +classes <- classIntervals(indicator_admin1[["opn_dfc"]], n = 5, style = "pretty") #can use "jenks" but is very slow +bbox <- buffer_bbox(sf::st_bbox(indicator_admin1), 0.1) +prop_x = 0.95 +prop_y = 0.95 +bbox_arrow <- c(x = bbox[["xmin"]] + prop_x * (bbox[["xmax"]] - bbox[["xmin"]]), y = bbox[["ymin"]] + prop_y * (bbox[["ymax"]] - bbox[["ymin"]])) + +indicator_admin1 <- indicator_admin1 |> + dplyr::mutate(opn_dfc_class = cut(opn_dfc, classes$brks, include.lowest = TRUE)) +# |> + # dplyr::mutate(opn_dfc_class = stringr::str_replace_na(opn_dfc_class, "Missing data")) + +legend_labels <- c(levels(indicator_admin1$opn_dfc_class), "Missing data") + +ggplot() + + # annotation_map_tile(type = "stamenwatercolor") + + geom_sf(data = indicator_admin1, aes(fill = opn_dfc_class), color = "transparent") + + scale_fill(palette = "red_5", discrete = TRUE, reverse_guide = FALSE, name = "Proportion (%)", labels = legend_labels, drop = FALSE) + + scalebar(st.size = 3, border.size = 0.5, x.min = bbox[["xmin"]], y.min = bbox[["ymin"]], x.max = bbox[["xmax"]], y.max = bbox[["ymax"]], dist = 50, dist_unit = "km", transform = TRUE) + + north(symbol = 12, anchor = bbox_arrow, x.min = bbox[["xmin"]], y.min = bbox[["ymin"]], x.max = bbox[["xmax"]], y.max = bbox[["ymax"]]) + + theme_void() + + theme( + # legend.justification defines the edge of the legend that the legend.position coordinates refer to + legend.justification = c(0, 1), + # Set the legend flush with the left side of the plot, and just slightly below the top of the plot + legend.position = c(0, .95), + # Set fontfamily + text = element_text(family = "Leelawadee") + ) + + + +centroid_admin1 <- visualizeR::centroid_admin1 |> + # sf::st_set_crs(4326) |> + sf::st_coordinates() |> + dplyr::bind_cols(centroid_admin1) |> + sf::st_as_sf(remove = FALSE, crs = sf::st_crs(4326)) + + +add_text_labels <- function(map = NULL, + point, + text, + size = 0.5, + fontface = "bold", + fontfamily = "Leelawadee", + halo_radius = 0.15, + halo_color = "white", + angle = 0, + force = 0, + force_pull = 0){ + + if(is.null(map)) map <- ggplot() + + col_name <- rlang::as_name(rlang::enquo(text)) + + layer <- map + + ggspatial::geom_spatial_text_repel( + data = point, + aes(x = X, y = Y, label = !!rlang::sym(col_name)), + crs = sf::st_crs(point)$input, + force = force, + force_pull = force_pull, + size = 3, + angle = angle, + fontface = fontface, + family = fontfamily, + bg.r = halo_radius, + bg.color = halo_color) + + + return(layer) + +} + + + +add_admin_boundaries <- function(map = NULL, lines, colors, labels, lwds, legend_title = "", buffer = NULL, ...){ + + + if(is.null(map)) map <- ggplot() + + #------ Check that the length of vectors is identical between arguments + + if(!inherits(lines, "list")) rlang::abort("Please provide a list for lines.") + + ll <- list(lines, colors, labels, lwds) + if (!all(sapply(ll,length) == length(ll[[1]]))) rlang::abort("lines, colors, labels, lwds do not all have the same length.") + + + #------ Make valid + + lines <- lapply(lines, \(x) sf::st_make_valid(x)) + + + # #------ Prepare legend + # legend_lines <- tmap::tm_add_legend("line", + # title = title, + # col = colors, + # lwd = lwds, + # labels = labels) + + #------ Let's go with all line shapes + + for (i in 1:length(lines)) { + lines[[i]] <- lines[[i]] |> + dplyr::mutate(color = colors[[i]], + label = labels[[i]], + lwd = lwds[[i]]) + } + + + layers <- map + ggplot2::geom_sf(data = lines[[1]], aes(color = .data[["label"]], linewidth = .data[["label"]])) + + if (length(lines) > 1){ + + for(i in 2:length(lines)){ + + data <- lines[[i]] + color <- labels[[i]] + size <- labels[[i]] + + layers <- layers + ggplot2::geom_sf(data = data, aes(color = .data[["label"]], linewidth = .data[["label"]])) + + } + } + # + layers <- layers + + ggplot2::scale_color_manual(name = legend_title, values = setNames(colors, labels), breaks = labels) + + ggplot2::scale_discrete_manual("linewidth", name = legend_title, values = setNames(lwds, labels), breaks = labels) + + + return(layers) + + +} + +test <- add_indicator_layer(indicator_admin1, opn_dfc, n = 5, text_na = "Et ouais") +test <- add_admin_boundaries(map = test, + lines = list(line_admin1, border_admin0, frontier_admin0), + colors = cols_reach("main_lt_grey", "main_grey", "black"), + lwds = c(0.5, 1, 2), + labels = c("Department", "Country", "Dominican Rep. frontier"), + legend_title = "Administrative boundaries") +test <- add_text_labels(map = test, centroid_admin1, ADM1_FR_UPPER) +test + + +# map +ggplot2::ggsave(test, + "R/test.pdf", + height = 4.5, + width = 6, + device = cairo_pdf +) + +test <- add_text_labels(map = test, centroid_admin1, ADM1_FR_UPPER) + +ggplot2::ggsave("test.svg", test, device = "svg", width = 6.5, height = 4) + + + +test + +test <- add_indicator_layer(indicator_admin1, opn_dfc, n = 5) + add_text_labels(map = NULL, centroid_admin1, ADM1_FR_UPPER) + add_admin_boundaries(map = NULL, + lines = list(line_admin1, border_admin0, frontier_admin0), + colors = cols_reach("main_lt_grey", "dk_grey", "black"), + lwds = c(0.5, 2, 3), + labels = c("Department", "Country", "Dominican Rep. frontier"), + title = "Administrative boundaries") + + +library(patchwork) +test+test2 + + +# # Final first draft ------------------------------------------------------- + + + +add_indicator_layer <- function(poly, col, n = 5, palette = "red_5", style = "pretty", discrete = TRUE, legend_title = "Proportion (%)", drop = FALSE, buffer = NULL, fontfamily = "Segoe UI", text_NA = "Missing data", legend_position = c(0, 0.95)){ + + #------ Checks and make valid + + rlang::check_installed("tmap", reason = "Package \"tmap\" needed for `add_indicator_layer()` to work. Please install it.") + + poly <- sf::st_make_valid(poly) + + #------ Other checks + + col_name <- rlang::as_name(rlang::enquo(col)) + if_not_in_stop(poly, col_name, "poly", "col") + + if (!is.numeric(poly[[col_name]])) rlang::abort(glue::glue("{col_name} is not numeric.")) + + + #------ Prepare data + + if(!is.null(buffer)){ buffer <- buffer_bbox(poly, buffer) } else { buffer <- NULL } + + classes <- classInt::classIntervals(poly[[col_name]], n = n, style = style) + col_class_name <- paste0(col_name, "_class") + + poly <- poly |> + dplyr::mutate("{col_class_name}" := cut({{ col }}, classes$brks, include.lowest = TRUE)) + + legend_labels <- c(levels(poly[[col_class_name]]), text_NA) + + #------ Make map layer + + layer <- ggplot() + + geom_sf(data = poly, aes(fill = !!rlang::sym(col_class_name)), color = "transparent") + + scale_fill(palette = palette, discrete = discrete, reverse_guide = FALSE, name = legend_title, labels = legend_labels, drop = drop) + + theme_void() + + theme( + # legend.justification defines the edge of the legend that the legend.position coordinates refer to + legend.justification = c(0, 1), + # Set the legend flush with the left side of the plot, and just slightly below the top of the plot + legend.position = legend_position, + # Set fontfamily + text = element_text(family = fontfamily) + ) + + ggplot2::guides(fill = ggplot2::guide_legend(override.aes = list(color = cols_reach("main_lt_grey")))) + + return(layer) + +} + + + +add_labs <- function(map = NULL, title = NULL, subtitle = NULL){ + +} + + +#------ example +tt <- add_indicator_layer(indicator_admin1, opn_dfc, n = 5) + diff --git a/R/theme_bar.R b/R/theme_bar.R deleted file mode 100644 index eb16730..0000000 --- a/R/theme_bar.R +++ /dev/null @@ -1,97 +0,0 @@ -#' Custom Theme for Bar Charts -#' -#' @return A custom theme object. -#' -#' -#' @rdname theme_default -#' -#' @inheritParams bar -#' -#' @export -theme_bar <- function( - flip = TRUE, - add_text = FALSE, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5) { - # If add_text is TRUE, flip is FALSE - if (!flip && !add_text) { - par_axis_text_font_face <- "plain" - par_axis_x <- TRUE - par_axis_y <- TRUE - par_axis_line_y <- FALSE - par_axis_ticks_y <- TRUE - par_axis_text_y <- TRUE - par_axis_line_x <- TRUE - par_axis_ticks_x <- TRUE - par_axis_text_x <- TRUE - par_grid_major_y <- TRUE - par_grid_major_x <- FALSE - par_grid_minor_y <- TRUE - par_grid_minor_x <- FALSE - } else if (flip && !add_text) { - par_axis_text_font_face <- "plain" - par_axis_x <- TRUE - par_axis_y <- TRUE - par_axis_line_y <- TRUE - par_axis_ticks_y <- TRUE - par_axis_text_y <- TRUE - par_axis_line_x <- FALSE - par_axis_ticks_x <- TRUE - par_axis_text_x <- TRUE - par_grid_major_y <- FALSE - par_grid_major_x <- TRUE - par_grid_minor_y <- FALSE - par_grid_minor_x <- TRUE - } else if (!flip && add_text) { - par_axis_text_font_face <- "bold" - par_axis_x <- TRUE - par_axis_y <- TRUE - par_axis_line_y <- FALSE - par_axis_ticks_y <- FALSE - par_axis_text_y <- FALSE - par_axis_line_x <- FALSE - par_axis_ticks_x <- TRUE - par_axis_text_x <- TRUE - par_grid_major_y <- FALSE - par_grid_major_x <- FALSE - par_grid_minor_y <- FALSE - par_grid_minor_x <- FALSE - } else if (flip && add_text) { - par_axis_text_font_face <- "bold" - par_axis_x <- TRUE - par_axis_y <- TRUE - par_axis_line_y <- FALSE - par_axis_ticks_y <- TRUE - par_axis_text_y <- TRUE - par_axis_line_x <- FALSE - par_axis_ticks_x <- FALSE - par_axis_text_x <- FALSE - par_grid_major_y <- FALSE - par_grid_major_x <- FALSE - par_grid_minor_y <- FALSE - par_grid_minor_x <- FALSE - } - - # Theme - t <- theme_default( - axis_text_font_face = par_axis_text_font_face, - axis_x = par_axis_x, - axis_y = par_axis_y, - grid_major_y = par_grid_major_y, - grid_major_x = par_grid_major_x, - grid_minor_y = par_grid_minor_y, - grid_minor_x = par_grid_minor_x, - axis_text_y = par_axis_text_y, - axis_line_y = par_axis_line_y, - axis_ticks_y = par_axis_ticks_y, - axis_text_x = par_axis_text_x, - axis_line_x = par_axis_line_x, - axis_ticks_x = par_axis_ticks_x, - axis_text_x_angle = axis_text_x_angle, - axis_text_x_vjust = axis_text_x_vjust, - axis_text_x_hjust = axis_text_x_hjust - ) - - return(t) -} diff --git a/R/theme_default.R b/R/theme_default.R deleted file mode 100644 index 5c740a2..0000000 --- a/R/theme_default.R +++ /dev/null @@ -1,399 +0,0 @@ -#' ggplot2 theme wrapper with fonts and colors -#' -#' @param title_size The size of the title. Defaults to 12. -#' @param title_color Title color. -#' @param title_font_face Title font face. Default to "bold". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param title_hjust Title horizontal justification. Default to NULL. Use 0.5 to center the title. -#' @param title_font_family Title font family. Default to "Carlito". -#' @param title_position_to_plot TRUE or FALSE. Positioning to plot or to panel? -#' @param subtitle_font_family Subtitle font family. Default to "Carlito". -#' @param subtitle_size The size of the subtitle. Defaults to 10. -#' @param subtitle_color Subtitle color. -#' @param subtitle_font_face Subtitle font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param subtitle_hjust Subtitle horizontal justification. Default to NULL. Use 0.5 to center the subtitle. -#' @param text_font_family Text font family. Default to "Carlito". -#' @param text_size The size of all text other than the title, subtitle and caption. Defaults to 10. -#' @param text_color Text color. -#' @param text_font_face Text font face. Default to "bold". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param panel_background_color The color for the panel background color. Default to white. -#' @param panel_border Boolean. Plot a panel border? Default to FALSE. -#' @param panel_border_color A color. Default to REACH main grey. -#' @param legend_position Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none". -#' @param legend_direction Direction of the legend. Default to "vertical". Can take "vertical" or "horizontal". -#' @param legend_justification In addition to legend_direction, place the legend. Can take "left", "bottom", "center", "right", "top". -#' @param legend_title_size Legend title size. -#' @param legend_title_color Legend title color. -#' @param legend_title_font_face Legend title font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param legend_title_font_family Legend title font family. Default to "Carlito". -#' @param legend_text_size Legend text size. -#' @param legend_text_color Legend text color. -#' @param legend_text_font_face Legend text font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param legend_text_font_family Legend text font family. Default to "Carlito". -#' -#' @param legend_reverse Reverse the color in the guide? Default to TRUE. -#' @param facet_size Facet font size. -#' @param facet_color Facet font color. -#' @param facet_font_face Facet font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param facet_font_family Facet font family. Default to "Carlito". -#' @param facet_bg_color Facet background color. -#' @param axis_x Boolean. Do you need x-axis? -#' @param axis_y Boolean. Do you need y-axis? -#' @param axis_text_font_family Axis text font family. Default to "Carlito". -#' @param axis_text_size Axis text size. -#' @param axis_text_color Axis text color. -#' @param axis_text_font_face Axis text font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param axis_text_x Boolean. Do you need the text for the x-axis? -#' @param axis_line_x Boolean. Do you need the line for the x-axis? -#' @param axis_ticks_x Boolean. Do you need the line for the x-axis? -#' @param axis_text_x_angle Angle for the x-axis text. -#' @param axis_text_x_vjust Vertical adjustment for the x-axis text. -#' @param axis_text_x_hjust Vertical adjustment for the x-axis text. -#' @param axis_text_y Boolean. Do you need the text for the y-axis? -#' @param axis_line_y Boolean. Do you need the line for the y-axis? -#' @param axis_ticks_y Boolean. Do you need the line for the y-axis? -#' @param axis_title_size Axis title size. -#' @param axis_title_color Axis title color. -#' @param axis_title_font_face Axis title font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param grid_major_x Boolean. Do you need major grid lines for x-axis? -#' @param grid_major_y Boolean. Do you need major grid lines for y-axis? -#' @param grid_major_x_size Major X line size. -#' @param grid_major_y_size Major Y line size. -#' @param grid_major_color Major grid lines color. -#' @param grid_minor_x Boolean. Do you need minor grid lines for x-axis? -#' @param grid_minor_y Boolean. Do you need minor grid lines for y-axis? -#' @param grid_minor_x_size Minor X line size. -#' @param grid_minor_y_size Minor Y line size. -#' @param grid_minor_color Minor grid lines color. -#' @param caption_font_family Caption font family. Default to "Carlito". -#' @param caption_font_face Caption font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic"). -#' @param caption_position_to_plot TRUE or FALSE. Positioning to plot or to panel? -#' @param caption_size The size of the caption. Defaults to 10. -#' @param caption_color Caption color. -#' @param ... Additional arguments passed to [ggplot2::theme()]. -#' -#' -#' @description Give some reach colors and fonts to a ggplot. -#' -#' @export -theme_default <- function( - title_font_family = "Carlito", - title_size = 20, - title_color = color("dark_grey"), - title_font_face = "bold", - title_hjust = NULL, - title_position_to_plot = TRUE, - subtitle_font_family = "Carlito", - subtitle_size = 16, - subtitle_color = color("dark_grey"), - subtitle_font_face = "plain", - subtitle_hjust = NULL, - text_font_family = "Carlito", - text_size = 14, - text_color = color("dark_grey"), - text_font_face = "plain", - panel_background_color = "#FFFFFF", - panel_border = FALSE, - panel_border_color = color("dark_grey"), - legend_position = "top", - legend_direction = "horizontal", - legend_justification = "center", - legend_reverse = TRUE, - legend_title_size = 14, - legend_title_color = color("dark_grey"), - legend_title_font_face = "plain", - legend_title_font_family = "Carlito", - legend_text_size = 14, - legend_text_color = color("dark_grey"), - legend_text_font_face = "plain", - legend_text_font_family = "Carlito", - facet_size = 15, - facet_color = color("dark_grey"), - facet_font_face = "bold", - facet_font_family = "Carlito", - facet_bg_color = color("lighter_grey"), - axis_x = TRUE, - axis_y = TRUE, - axis_text_x = TRUE, - axis_line_x = FALSE, - axis_ticks_x = FALSE, - axis_text_y = TRUE, - axis_line_y = TRUE, - axis_ticks_y = TRUE, - axis_text_font_family = "Carlito", - axis_text_size = 14, - axis_text_color = color("dark_grey"), - axis_text_font_face = "plain", - axis_title_size = 15, - axis_title_color = color("dark_grey"), - axis_title_font_face = "plain", - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5, - grid_major_x = TRUE, - grid_major_y = FALSE, - grid_major_color = color("dark_grey"), - grid_major_x_size = 0.1, - grid_major_y_size = 0.1, - grid_minor_x = TRUE, - grid_minor_y = FALSE, - grid_minor_color = color("dark_grey"), - grid_minor_x_size = 0.05, - grid_minor_y_size = 0.05, - caption_font_family = "Carlito", - caption_font_face = "plain", - caption_position_to_plot = TRUE, - caption_size = 12, - caption_color = color("dark_grey"), - ...) { - # Basic simple theme - theme <- ggplot2::theme_minimal() - - theme <- theme + - ggplot2::theme( - # # Text - design - text = ggplot2::element_text( - family = text_font_family, - color = text_color, - size = text_size, - face = text_font_face - ), - # Default legend to right position - legend.position = legend_position, - # Defaut legend to vertical direction - legend.direction = legend_direction, - # Text sizes - axis.text = ggplot2::element_text( - size = axis_text_size, - family = axis_text_font_family, - face = axis_text_font_face, - color = axis_text_color - ), - axis.title = ggplot2::element_text( - size = axis_title_size, - family = axis_text_font_family, - face = axis_title_font_face, - color = axis_title_color - ), - # # Wrap title - plot.title = ggtext::element_textbox_simple( - hjust = title_hjust, - family = title_font_family, - color = title_color, - size = title_size, - face = title_font_face, - width = grid::unit(0.9, "npc"), - margin = ggplot2::margin(b = 10) - ), - plot.subtitle = ggtext::element_textbox_simple( - hjust = title_hjust, - family = subtitle_font_family, - color = subtitle_color, - size = subtitle_size, - face = subtitle_font_face, - margin = ggplot2::margin(t = 5, b = 10) - ), - plot.caption = ggtext::element_textbox_simple( - size = caption_size, - face = caption_font_face, - family = caption_font_family, - color = caption_color, - margin = ggplot2::margin(t = 10) - ), - legend.title = ggplot2::element_text( - size = legend_title_size, - face = legend_title_font_face, - family = legend_title_font_family, - color = legend_title_color - ), - legend.text = ggplot2::element_text( - size = legend_text_size, - face = legend_text_font_face, - family = legend_text_font_family, - color = legend_text_color - ), - axis.text.x = ggplot2::element_text( - angle = axis_text_x_angle, - vjust = axis_text_x_vjust, - hjust = axis_text_x_hjust - ) - ) - - # Position of title - if (title_position_to_plot) { - theme <- theme + - ggplot2::theme( - plot.title.position = "plot" - ) - } - - if (caption_position_to_plot) { - theme <- theme + - ggplot2::theme( - plot.caption.position = "plot" - ) - } - # Position of caption - - # Axis lines ? - if (axis_x & axis_y) { - theme <- theme + - ggplot2::theme( - axis.line = ggplot2::element_line(color = text_color) - ) - } - - if (!axis_x) { - theme <- theme + - ggplot2::theme( - axis.line.x = ggplot2::element_blank(), - axis.ticks.x = ggplot2::element_blank(), - axis.text.x = ggplot2::element_blank() - ) - } - - if (!axis_y) { - theme <- theme + - ggplot2::theme( - axis.line.y = ggplot2::element_blank(), - axis.ticks.y = ggplot2::element_blank(), - axis.text.y = ggplot2::element_blank() - ) - } - - if (!axis_line_x) { - theme <- theme + - ggplot2::theme( - axis.line.x = ggplot2::element_blank() - ) - } - - if (!axis_ticks_x) { - theme <- theme + - ggplot2::theme( - axis.ticks.x = ggplot2::element_blank() - ) - } - - if (!axis_text_x) { - theme <- theme + - ggplot2::theme( - axis.text.x = ggplot2::element_blank() - ) - } - - if (!axis_line_y) { - theme <- theme + - ggplot2::theme( - axis.line.y = ggplot2::element_blank() - ) - } - - if (!axis_ticks_y) { - theme <- theme + - ggplot2::theme( - axis.ticks.y = ggplot2::element_blank() - ) - } - - if (!axis_text_y) { - theme <- theme + - ggplot2::theme( - axis.text.y = ggplot2::element_blank() - ) - } - - # X - major grid lines - if (!grid_major_x) { - theme <- theme + - ggplot2::theme( - panel.grid.major.x = ggplot2::element_blank() - ) - } else { - theme <- theme + - ggplot2::theme( - panel.grid.major.x = ggplot2::element_line( - color = grid_major_color, - linewidth = grid_major_x_size - ) - ) - } - - # Y - major grid lines - if (!grid_major_y) { - theme <- theme + - ggplot2::theme( - panel.grid.major.y = ggplot2::element_blank() - ) - } else { - theme <- theme + - ggplot2::theme( - panel.grid.major.y = ggplot2::element_line( - color = grid_major_color, - linewidth = grid_major_y_size - ) - ) - } - - # X - minor grid lines - if (!grid_minor_x) { - theme <- theme + - ggplot2::theme( - panel.grid.minor.x = ggplot2::element_blank() - ) - } else { - theme <- theme + - ggplot2::theme( - panel.grid.minor.x = ggplot2::element_line( - color = grid_minor_color, - linewidth = grid_minor_x_size - ) - ) - } - - # Y - minor grid lines - if (!grid_minor_y) { - theme <- theme + - ggplot2::theme( - panel.grid.minor.y = ggplot2::element_blank() - ) - } else { - theme <- theme + - ggplot2::theme( - panel.grid.minor.y = ggplot2::element_line( - color = grid_minor_color, - linewidth = grid_minor_y_size - ) - ) - } - if (!panel_border) { - theme <- theme + - ggplot2::theme( - panel.border = ggplot2::element_blank() - ) - } else { - theme <- theme + - ggplot2::theme( - panel.border = ggplot2::element_rect(color = panel_background_color) - ) - } - - # Add facet title text size - theme <- theme + - ggplot2::theme( - strip.text = ggplot2::element_text( - size = facet_size, - family = facet_font_family, - face = facet_font_face, - color = facet_color - ), - strip.background = ggplot2::element_rect( - fill = facet_bg_color, - linewidth = 0 - ) - ) - - # Other parameters - theme <- theme + ggplot2::theme(...) - - return(theme) -} diff --git a/R/theme_dumbbell.R b/R/theme_dumbbell.R deleted file mode 100644 index 76f89a4..0000000 --- a/R/theme_dumbbell.R +++ /dev/null @@ -1,10 +0,0 @@ -#' @title Dumbbell Theme - -#' @description Theme for dumbbell charts based on theme_default. -#' -#' @rdname theme_default -#' -#' @export -theme_dumbbell <- function() { - theme_default() -} diff --git a/R/theme_lollipop.R b/R/theme_lollipop.R deleted file mode 100644 index ceea089..0000000 --- a/R/theme_lollipop.R +++ /dev/null @@ -1,82 +0,0 @@ -#' Custom Theme for Lollipop Charts -#' -#' @description -#' A custom theme specifically designed for lollipop charts with appropriate grid lines and axis styling -#' based on whether the chart is flipped (horizontal) or not. -#' -#' @param flip Logical indicating whether the lollipop chart is flipped (horizontal). Default is TRUE. -#' @param axis_text_x_angle Angle for x-axis text labels. Default is 0. -#' @param axis_text_x_vjust Vertical justification for x-axis text labels. Default is 0.5. -#' @param axis_text_x_hjust Horizontal justification for x-axis text labels. Default is 0.5. -#' -#' @return A ggplot2 theme object -#' -#' @rdname theme_default -#' @export -#' -#' @examples -#' \dontrun{ -#' library(ggplot2) -#' df <- data.frame(x = letters[1:5], y = c(10, 5, 7, 12, 8)) -#' ggplot(df, aes(x, y)) + -#' geom_point() + -#' theme_lollipop() -#' } -theme_lollipop <- function( - flip = TRUE, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5) { - # Set parameters based on flip - if (!flip) { - par_axis_text_font_face <- "plain" - par_axis_x <- TRUE - par_axis_y <- TRUE - par_axis_line_y <- FALSE - par_axis_ticks_y <- TRUE - par_axis_text_y <- TRUE - par_axis_line_x <- TRUE - par_axis_ticks_x <- TRUE - par_axis_text_x <- TRUE - par_grid_major_y <- TRUE - par_grid_major_x <- FALSE - par_grid_minor_y <- TRUE - par_grid_minor_x <- FALSE - } else if (flip) { - par_axis_text_font_face <- "plain" - par_axis_x <- TRUE - par_axis_y <- TRUE - par_axis_line_y <- TRUE - par_axis_ticks_y <- TRUE - par_axis_text_y <- TRUE - par_axis_line_x <- FALSE - par_axis_ticks_x <- TRUE - par_axis_text_x <- TRUE - par_grid_major_y <- FALSE - par_grid_major_x <- TRUE - par_grid_minor_y <- FALSE - par_grid_minor_x <- TRUE - } - - # Theme - t <- theme_default( - axis_text_font_face = par_axis_text_font_face, - axis_x = par_axis_x, - axis_y = par_axis_y, - grid_major_y = par_grid_major_y, - grid_major_x = par_grid_major_x, - grid_minor_y = par_grid_minor_y, - grid_minor_x = par_grid_minor_x, - axis_text_y = par_axis_text_y, - axis_line_y = par_axis_line_y, - axis_ticks_y = par_axis_ticks_y, - axis_text_x = par_axis_text_x, - axis_line_x = par_axis_line_x, - axis_ticks_x = par_axis_ticks_x, - axis_text_x_angle = axis_text_x_angle, - axis_text_x_vjust = axis_text_x_vjust, - axis_text_x_hjust = axis_text_x_hjust - ) - - return(t) -} diff --git a/R/theme_point.R b/R/theme_point.R deleted file mode 100644 index 59c0840..0000000 --- a/R/theme_point.R +++ /dev/null @@ -1,31 +0,0 @@ -#' Custom Theme for Point Charts -#' -#' @param flip Logical. Whether the plot is flipped (horizontal). -#' @param axis_text_x_angle Angle for x-axis text. -#' @param axis_text_x_vjust Vertical justification for x-axis text. -#' @param axis_text_x_hjust Horizontal justification for x-axis text. -#' -#' @rdname theme_default -#' -#' @return A custom theme object. -#' -#' @export -theme_point <- function() { - t <- theme_default( - axis_text_font_face = "plain", - axis_x = TRUE, - axis_y = TRUE, - grid_major_y = TRUE, - grid_major_x = TRUE, - grid_minor_y = FALSE, - grid_minor_x = FALSE, - axis_text_x = TRUE, - axis_line_x = TRUE, - axis_ticks_x = TRUE, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0 - ) - - return(t) -} diff --git a/R/theme_reach.R b/R/theme_reach.R new file mode 100644 index 0000000..fe5601b --- /dev/null +++ b/R/theme_reach.R @@ -0,0 +1,65 @@ +#' @title ggplot2 theme with REACH color palettes +#' +#' @param palette Palette name from 'pal_reach()'. +#' @param discrete Boolean indicating whether color aesthetic is discrete or not. +#' @param reverse Boolean indicating whether the palette should be reversed. +#' @param family The font family for all plot's texts. Default to "Leelawadee". +#' @param text_size The size of all text other than the title, subtitle and caption. Defaults to 10. +#' @param title_size The size of the title text_family. Defaults to 14. +#' @param plot_background_pal The color for the plot background color. Default to white. +#' @param panel_background_pal The color for the panel background color. Default to white. +#' @param legend_position Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none". +#' @param legend_direction Direction of the legend. Default to "vertical". Can take "vertical" or "horizontal". +#' @param legend_reverse Reverse the color in the guide? Default to TRUE. +#' @param ... Additional arguments passed to `ggblanket::gg_theme()`. +#' +#' +#' @description Give some reach colors and fonts to a ggplot. +#' +#' @return The base REACH theme +#' +#' @export +theme_reach <- function( + palette = "main", + discrete = TRUE, + reverse = FALSE, + family = "Leelawadee", + text_size = 10, + title_size = 14, + plot_background_pal = "#FFFFFF", + panel_background_pal = "#FFFFFF", + legend_position = "right", + legend_direction = "vertical", + legend_reverse = TRUE, + ... + ) { + + # Basic simple theme + theme_reach <- ggblanket::gg_theme( + text_family = family, + text_size = text_size, + title_size = title_size, + plot_background_pal = plot_background_pal, + panel_background_pal = panel_background_pal) + + + # Default legend to right position + theme_reach <- theme_reach + + ggplot2::theme(legend.position = legend_position) + + # Defaut legend to vertical direction + theme_reach <- theme_reach + + ggplot2::theme(legend.direction = legend_direction) + + # Add reach color palettes by default + # (reversed guide is defaulted to TRUE for natural reading) + theme_reach <- list( + theme_reach, + scale_color(palette = palette, discrete = discrete, reverse = reverse, reverse_guide = legend_reverse), + scale_fill(palette = palette, discrete = discrete, reverse = reverse, reverse_guide = legend_reverse) + ) + + + return(theme_reach) + +} diff --git a/R/visualizeR-package.R b/R/visualizeR-package.R deleted file mode 100644 index a65cf64..0000000 --- a/R/visualizeR-package.R +++ /dev/null @@ -1,6 +0,0 @@ -#' @keywords internal -"_PACKAGE" - -## usethis namespace: start -## usethis namespace: end -NULL diff --git a/README.Rmd b/README.Rmd index 0fcb29a..ae39c52 100644 --- a/README.Rmd +++ b/README.Rmd @@ -11,29 +11,23 @@ knitr::opts_chunk$set( fig.path = "man/figures/README-", out.width = "100%", warning = FALSE, - message = FALSE, - dpi = 300, - dev.args = list(type = "cairo") + message = FALSE ) -desc <- read.dcf("DESCRIPTION") -desc <- setNames(as.list(desc), colnames(desc)) +desc = read.dcf('DESCRIPTION') +desc = setNames(as.list(desc), colnames(desc)) ``` -# `r desc$Package` - - -[![R-CMD-check](https://github.com/gnoblet/visualizeR/actions/workflows/R-CMD-check.yml/badge.svg)](https://github.com/gnoblet/visualizeR/actions/workflows/R-CMD-check.yml) -[![Codecov test coverage](https://codecov.io/gh/gnoblet/visualizeR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/gnoblet/visualizeR?branch=main) - +# `r desc$Package` > `r desc$Title` -`visualizeR` proposes some utils to sane colors, ready-to-go color palettes, and a few visualization functions. The package is thoroughly tested with comprehensive code coverage. +`visualizeR` proposes some utils to get REACH and AGORA colors, ready-to-go color palettes, and a few visualization functions (horizontal hist graph for instance). ## Installation -You can install the last version of visualizeR from [GitHub](https://github.com/) with: +You can install the last version of visualizeR from +[GitHub](https://github.com/) with: ```{r, eval = FALSE} # install.packages("devtools") @@ -44,246 +38,110 @@ devtools::install_github("gnoblet/visualizeR", build_vignettes = TRUE) Roadmap is as follows: -- [ ] Full revamp of core functions (colors, pattern, incl. adding test and pre-commit structures) -- [x] Add test coverage reporting via codecov -- [ ] Maintain >80% test coverage across all functions -- [ ] Add other types of plots: - - [ ] Dumbell - - [ ] Waffle - - [ ] Donut - - [ ] Alluvial -- [ ] Option for tag with css code + for titles/subtitles/captions +- [X] Add IMPACT's colors +- [X] Add all color palettes from the internal documentation +- [ ] There remains to be added more-than-7-color palettes and black color palettes +- [ ] Add new types of visualization (e.g. dumbbell plot) +- [ ] Use examples +- [ ] Add some ease-map functions +- [ ] Add some interactive functions (maps and graphs) ## Request -Please, do not hesitate to pull request any new viz or colors or color palettes, or to email request any change ([gnoblet\@zaclys.net](mailto:gnoblet@zaclys.net){.email}). +Please, do not hesitate to pull request any new viz or colors or color palettes, or to email request any change (guillaume.noblet@reach-initiative.org or gnoblet@zaclys.net). -## Code Coverage +## Colors -`visualizeR` uses [codecov](https://codecov.io/) for test coverage reporting. You can see the current coverage status by clicking on the codecov badge at the top of this README. We aim to maintain high test coverage to ensure code reliability and stability. - -## Colors - -Functions to access colors and palettes are `color()` or `palette()`. Feel free to pull request new colors. +Color palettes for REACH, AGORA and IMPACT are available. Functions to access colors and palettes are `cols_initiative()` or `pal_initiative()`. For now, the initiative with the most colors and color palettes is REACH. Feel free to pull requests new AGORA and IMPACT colors. ```{r example-colors, eval = TRUE} library(visualizeR) -# Get all saved colors, named -color(unname = F)[1:10] +# Get all saved REACH colors, named +cols_reach(unnamed = F)[1:10] # Extract a color palette as hexadecimal codes and reversed -palette(palette = "cat_5_main", reversed = TRUE, color_ramp_palette = FALSE) +pal_reach(palette = "main", reversed = TRUE, color_ramp_palette = FALSE) # Get all color palettes names -palette(show_palettes = TRUE) +pal_reach(show_palettes = T) ``` ## Charts -### Example 1: Bar chart +### Example 1: Bar chart, already REACH themed -```{r example-bar-chart, out.width = '65%', eval = TRUE} +```{r example-bar-chart, eval = TRUE} +library(visualizeR) library(palmerpenguins) library(dplyr) -df <- penguins |> - group_by(island, species) |> +df <- penguins |> + group_by(island, species) |> summarize( mean_bl = mean(bill_length_mm, na.rm = T), - mean_fl = mean(flipper_length_mm, na.rm = T) - ) |> + mean_fl = mean(flipper_length_mm, na.rm = T)) |> ungroup() -df_island <- penguins |> - group_by(island) |> - summarize( - mean_bl = mean(bill_length_mm, na.rm = T), - mean_fl = mean(flipper_length_mm, na.rm = T) - ) |> - ungroup() +# Simple bar chart by group +bar_reach(df, mean_bl, island, species, percent = FALSE, x_title = "Mean of bill length") -# Simple bar chart by group with some alpha transparency -bar(df, "island", "mean_bl", "species", x_title = "Mean of bill length", title = "Mean of bill length by island and species") - -# Flipped / Horizontal -hbar(df, "island", "mean_bl", "species", x_title = "Mean of bill length", title = "Mean of bill length by island and species") - -# Facetted -bar(df, "island", "mean_bl", facet = "species", x_title = "Mean of bill length", title = "Mean of bill length by island and species", add_color_guide = FALSE) - -# Flipped, with text, smaller width, and caption -hbar(df = df_island, x = "island", y = "mean_bl", title = "Mean of bill length by island", add_text = T, width = 0.6, add_text_suffix = "mm", add_text_expand_limit = 1.3, add_color_guide = FALSE, caption = "Data: palmerpenguins package.") +# Using another color palette +bar_reach(df, mean_bl, island, species, percent = FALSE, palette = "artichoke_3", legend_rev = TRUE) ``` -### Example 2: Scatterplot +### Example 2: Point chart, already REACH themed -```{r example-point-chart, out.width = '65%', eval = TRUE} -# Simple scatterplot -point(penguins, "bill_length_mm", "flipper_length_mm") +At this stage, `point_reach()` only supports categorical grouping colors with the `group` arg. -# Scatterplot with grouping colors, greater dot size, some transparency -point(penguins, "bill_length_mm", "flipper_length_mm", "island", group_title = "Island", alpha = 0.6, size = 3, title = "Bill vs. flipper length", , add_color_guide = FALSE) +```{r example-point-chart, eval = TRUE} -# Facetted scatterplot by island -point(penguins, "bill_length_mm", "flipper_length_mm", "species", "island", "fixed", group_title = "Species", title = "Bill vs. flipper length by species and island", add_color_guide = FALSE) +# Simple point chart +point_reach(penguins, bill_length_mm, flipper_length_mm) + +# Point chart with grouping colors, greater dot size, some transparency, reversed color palette +point_reach(penguins, bill_length_mm, flipper_length_mm, island, alpha = 0.6, size = 3, reverse = TRUE) + +# Using another color palettes +point_reach(penguins, bill_length_mm, flipper_length_mm, island, palette = "artichoke_3") ``` -### Example 3: Dumbbell plot +## Maps -Remember to ensure that your data are in the long format and you only have two groups on the x-axis; for instance, IDP and returnee and no NA values. +```{r example-map} -```{r example-dumbbell-plot, out.width = '65%', eval = TRUE} -# Prepare long data -df <- tibble::tibble( - admin1 = rep(letters[1:8], 2), - setting = c(rep(c("Rural", "Urban"), 4), rep(c("Urban", "Rural"), 4)), - stat = rnorm(16, mean = 50, sd = 18) -) |> - dplyr::mutate(stat = round(stat, 0)) - - - - -# dumbbell( -# df, -# 'stat', -# 'setting', -# 'admin1', -# title = '% of HHs that reported open defecation as sanitation facility', -# group_y_title = 'Admin 1', -# group_x_title = 'Setting' -# ) +# Add indicator layer +# - based on "pretty" classes and title "Proportion (%)" +# - buffer to add a 10% around the bounding box +map <- add_indicator_layer( + indicator_admin1, + opn_dfc, + buffer = 0.1) + + # Layout - some defaults - add the map title + add_layout("% of HH that reported open defecation as sanitation facility") + + # Admin boundaries as list of shape files (lines) and colors, line widths and labels as vectors + add_admin_boundaries( + lines = list(line_admin1, border_admin0, frontier_admin0), + colors = cols_reach("main_lt_grey", "dk_grey", "black"), + lwds = c(0.5, 2, 3), + labels = c("Department", "Country", "Dominican Rep. frontier"), + title = "Administrative boundaries") + + # Add text labels - centered on admin 1 centroids + add_admin_labels(centroid_admin1, ADM1_FR_UPPER) + + # Add a compass + add_compass() + + # Add a scale bar + add_scale_bar() + + # Add credits + add_credits("Admin. boundaries. : CNIGS \nCoord. system: GCS WGS 1984") ``` -### Example 4: donut chart - -```{r example-donut-plot, out.width = '65%', warning = FALSE} -# Some summarized data: % of HHs by displacement status -df <- tibble::tibble( - status = c("Displaced", "Non displaced", "Returnee", "Don't know/Prefer not to say"), - percentage = c(18, 65, 12, 3) -) - -# Donut -# donut(df, -# status, -# percentage, -# hole_size = 3, -# add_text_suffix = '%', -# add_text_color = color('dark_grey'), -# add_text_treshold_display = 5, -# x_title = 'Displacement status', -# title = '% of HHs by displacement status' -# ) +```{r map-save, eval = TRUE, include = FALSE, echo = TRUE} +tmap::tmap_save(map, + "man/figures/README-example-map.png", + height = 4.5, + width = 6 + ) ``` -### Example 5: Waffle chart - -```{r example-waffle-plot, out.width = '65%', warning = FALSE} -# -# waffle(df, status, percentage, x_title = 'A caption', title = 'A title', subtitle = 'A subtitle') -``` - -### Example 6: Alluvial chart - -```{r example-alluvial-plot, out.width = '65%', warning = FALSE} -# Some summarized data: % of HHs by self-reported status of displacement in 2021 and in 2022 -df <- tibble::tibble( - status_from = c( - rep("Displaced", 4), - rep("Non displaced", 4), - rep("Returnee", 4), - rep("Dnk/Pnts", 4) - ), - status_to = c("Displaced", "Non displaced", "Returnee", "Dnk/Pnts", "Displaced", "Non displaced", "Returnee", "Dnk/Pnts", "Displaced", "Non displaced", "Returnee", "Dnk/Pnts", "Displaced", "Non displaced", "Returnee", "Dnk/Pnts"), - percentage = c(20, 8, 18, 1, 12, 21, 0, 2, 0, 3, 12, 1, 0, 0, 1, 1) -) - -# Alluvial, here the group is the status for 2021 - -# alluvial(df, -# status_from, -# status_to, -# percentage, -# status_from, -# from_levels = c("Displaced", "Non displaced", "Returnee", "Dnk/Pnts"), -# alpha = 0.8, -# group_title = "Status for 2021", -# title = "% of HHs by self-reported status from 2021 to 2022" -# ) -``` - -### Example 7: Lollipop chart - -```{r example-lollipop-chart, out.width = "65%", warning = FALSE, eval = TRUE} -library(tidyr) -# Prepare long data -df <- tibble::tibble( - admin1 = replicate(15, sample(letters, 8)) |> t() |> as.data.frame() |> unite("admin1", sep = "") |> dplyr::pull(admin1), - stat = rnorm(15, mean = 50, sd = 15) -) |> - dplyr::mutate(stat = round(stat, 0)) - -# Simple vertical lollipop chart -lollipop( - df = df, - x = "admin1", - y = "stat", - flip = FALSE, - dot_size = 3, - y_title = "% of HHs", - x_title = "Admin 1", - title = "% of HHs that received humanitarian assistance" -) - -# Horizontal lollipop chart with custom colors -hlollipop( - df = df, - x = "admin1", - y = "stat", - dot_size = 4, - line_size = 1, - add_color = color("cat_5_main_2"), - line_color = color("cat_5_main_4"), - y_title = "% of HHs", - x_title = "Admin 1", - title = "% of HHs that received humanitarian assistance" -) - -# Create data for grouped lollipop - using set.seed for reproducibility -set.seed(123) -df_grouped <- tibble::tibble( - admin1 = rep(c("A", "B", "C", "D", "E", "F"), 2), - group = rep(c("Group A", "Group B"), each = 6), - stat = c(rnorm(6, mean = 40, sd = 10), rnorm(6, mean = 60, sd = 10)) -) |> - dplyr::mutate(stat = round(stat, 0)) - -# Grouped lollipop chart with proper side-by-side positioning -lollipop( - df = df_grouped, - x = "admin1", - y = "stat", - group = "group", - order = "grouped_y", - dot_size = 3.5, - line_size = 0.8, - y_title = "Value", - x_title = "Category", - title = "True side-by-side grouped lollipop chart" -) - -# Horizontal grouped lollipop chart -hlollipop( - df = df_grouped, - x = "admin1", - y = "stat", - group = "group", - dot_size = 3.5, - line_size = 0.8, - y_title = "Category", - x_title = "Value", - title = "Horizontal side-by-side grouped lollipop chart" -) -``` +![Once exported with `tmap::tmap_save()`.](man/figures/README-example-map.png) diff --git a/README.md b/README.md index 7a73c18..2fec6ca 100644 --- a/README.md +++ b/README.md @@ -1,20 +1,13 @@ -# visualizeR - - - -[![R-CMD-check](https://github.com/gnoblet/visualizeR/actions/workflows/R-CMD-check.yml/badge.svg)](https://github.com/gnoblet/visualizeR/actions/workflows/R-CMD-check.yml) -[![Codecov test -coverage](https://codecov.io/gh/gnoblet/visualizeR/branch/main/graph/badge.svg)](https://app.codecov.io/gh/gnoblet/visualizeR?branch=main) - +# visualizeR > What a color! What a viz! -`visualizeR` proposes some utils to sane colors, ready-to-go color -palettes, and a few visualization functions. The package is thoroughly -tested with comprehensive code coverage. +`visualizeR` proposes some utils to get REACH and AGORA colors, +ready-to-go color palettes, and a few visualization functions +(horizontal hist graph for instance). ## Installation @@ -30,313 +23,144 @@ devtools::install_github("gnoblet/visualizeR", build_vignettes = TRUE) Roadmap is as follows: -- [ ] Full revamp of core functions (colors, pattern, incl. adding test - and pre-commit structures) -- [x] Add test coverage reporting via codecov -- [ ] Maintain \>80% test coverage across all functions -- [ ] Add other types of plots: - - [ ] Dumbell - - [ ] Waffle - - [ ] Donut - - [ ] Alluvial -- [ ] Option for tag with css code + for titles/subtitles/captions +- [x] Add IMPACT’s colors +- [x] Add all color palettes from the internal documentation +- [ ] There remains to be added more-than-7-color palettes and black + color palettes +- [ ] Add new types of visualization (e.g. dumbbell plot) +- [ ] Use examples +- [ ] Add some ease-map functions +- [ ] Add some interactive functions (maps and graphs) ## Request Please, do not hesitate to pull request any new viz or colors or color -palettes, or to email request any change (). - -## Code Coverage - -`visualizeR` uses [codecov](https://codecov.io/) for test coverage -reporting. You can see the current coverage status by clicking on the -codecov badge at the top of this README. We aim to maintain high test -coverage to ensure code reliability and stability. +palettes, or to email request any change +( or ). ## Colors -Functions to access colors and palettes are `color()` or `palette()`. -Feel free to pull request new colors. +Color palettes for REACH, AGORA and IMPACT are available. Functions to +access colors and palettes are `cols_initiative()` or +`pal_initiative()`. For now, the initiative with the most colors and +color palettes is REACH. Feel free to pull requests new AGORA and IMPACT +colors. ``` r library(visualizeR) -# Get all saved colors, named -color(unname = F)[1:10] -#> white lighter_grey light_grey dark_grey light_blue_grey -#> "#FFFFFF" "#F5F5F5" "#E3E3E3" "#464647" "#B3C6D1" -#> grey black cat_2_yellow_1 cat_2_yellow_2 cat_2_light_1 -#> "#71716F" "#000000" "#ffc20a" "#0c7bdc" "#fefe62" +# Get all saved REACH colors, named +cols_reach(unnamed = F)[1:10] +#> white black main_grey main_red main_lt_grey main_beige +#> "#FFFFFF" "#000000" "#58585A" "#EE5859" "#C7C8CA" "#D2CBB8" +#> iroise_1 iroise_2 iroise_3 iroise_4 +#> "#DFECEF" "#B1D7E0" "#699DA3" "#236A7A" # Extract a color palette as hexadecimal codes and reversed -palette(palette = "cat_5_main", reversed = TRUE, color_ramp_palette = FALSE) -#> [1] "#083d77" "#4ecdc4" "#f4c095" "#b47eb3" "#ffd5ff" +pal_reach(palette = "main", reversed = TRUE, color_ramp_palette = FALSE) +#> [1] "#58585A" "#EE5859" "#C7C8CA" "#D2CBB8" # Get all color palettes names -palette(show_palettes = TRUE) -#> [1] "cat_2_yellow" "cat_2_light" -#> [3] "cat_2_green" "cat_2_blue" -#> [5] "cat_5_main" "cat_5_ibm" -#> [7] "cat_3_aquamarine" "cat_3_tol_high_contrast" -#> [9] "cat_8_tol_adapted" "cat_3_custom_1" -#> [11] "cat_4_custom_1" "cat_5_custom_1" -#> [13] "cat_6_custom_1" "div_5_orange_blue" -#> [15] "div_5_green_purple" +pal_reach(show_palettes = T) +#> [1] "main" "primary" "secondary" "two_dots" +#> [5] "two_dots_flashy" "red_main" "red_main_5" "red_alt" +#> [9] "red_alt_5" "iroise" "iroise_5" "discrete_6" +#> [13] "red_2" "red_3" "red_4" "red_5" +#> [17] "red_6" "red_7" "green_2" "green_3" +#> [21] "green_4" "green_5" "green_6" "green_7" +#> [25] "artichoke_2" "artichoke_3" "artichoke_4" "artichoke_5" +#> [29] "artichoke_6" "artichoke_7" "blue_2" "blue_3" +#> [33] "blue_4" "blue_5" "blue_6" "blue_7" ``` ## Charts -### Example 1: Bar chart +### Example 1: Bar chart, already REACH themed ``` r +library(visualizeR) library(palmerpenguins) library(dplyr) -df <- penguins |> - group_by(island, species) |> +df <- penguins |> + group_by(island, species) |> summarize( mean_bl = mean(bill_length_mm, na.rm = T), - mean_fl = mean(flipper_length_mm, na.rm = T) - ) |> + mean_fl = mean(flipper_length_mm, na.rm = T)) |> ungroup() -df_island <- penguins |> - group_by(island) |> - summarize( - mean_bl = mean(bill_length_mm, na.rm = T), - mean_fl = mean(flipper_length_mm, na.rm = T) - ) |> - ungroup() - -# Simple bar chart by group with some alpha transparency -bar(df, "island", "mean_bl", "species", x_title = "Mean of bill length", title = "Mean of bill length by island and species") +# Simple bar chart by group +bar_reach(df, mean_bl, island, species, percent = FALSE, x_title = "Mean of bill length") ``` - + ``` r -# Flipped / Horizontal -hbar(df, "island", "mean_bl", "species", x_title = "Mean of bill length", title = "Mean of bill length by island and species") +# Using another color palette +bar_reach(df, mean_bl, island, species, percent = FALSE, palette = "artichoke_3", legend_rev = TRUE) ``` - + + +### Example 2: Point chart, already REACH themed + +At this stage, `point_reach()` only supports categorical grouping colors +with the `group` arg. ``` r -# Facetted -bar(df, "island", "mean_bl", facet = "species", x_title = "Mean of bill length", title = "Mean of bill length by island and species", add_color_guide = FALSE) +# Simple point chart +point_reach(penguins, bill_length_mm, flipper_length_mm) ``` - + ``` r -# Flipped, with text, smaller width, and caption -hbar(df = df_island, x = "island", y = "mean_bl", title = "Mean of bill length by island", add_text = T, width = 0.6, add_text_suffix = "mm", add_text_expand_limit = 1.3, add_color_guide = FALSE, caption = "Data: palmerpenguins package.") +# Point chart with grouping colors, greater dot size, some transparency, reversed color palette +point_reach(penguins, bill_length_mm, flipper_length_mm, island, alpha = 0.6, size = 3, reverse = TRUE) ``` - - -### Example 2: Scatterplot - -``` r -# Simple scatterplot -point(penguins, "bill_length_mm", "flipper_length_mm") -``` - - + ``` r -# Scatterplot with grouping colors, greater dot size, some transparency -point(penguins, "bill_length_mm", "flipper_length_mm", "island", group_title = "Island", alpha = 0.6, size = 3, title = "Bill vs. flipper length", , add_color_guide = FALSE) +# Using another color palettes +point_reach(penguins, bill_length_mm, flipper_length_mm, island, palette = "artichoke_3") ``` - + + +## Maps ``` r -# Facetted scatterplot by island -point(penguins, "bill_length_mm", "flipper_length_mm", "species", "island", "fixed", group_title = "Species", title = "Bill vs. flipper length by species and island", add_color_guide = FALSE) +# Add indicator layer +# - based on "pretty" classes and title "Proportion (%)" +# - buffer to add a 10% around the bounding box +map <- add_indicator_layer( + indicator_admin1, + opn_dfc, + buffer = 0.1) + + # Layout - some defaults - add the map title + add_layout("% of HH that reported open defecation as sanitation facility") + + # Admin boundaries as list of shape files (lines) and colors, line widths and labels as vectors + add_admin_boundaries( + lines = list(line_admin1, border_admin0, frontier_admin0), + colors = cols_reach("main_lt_grey", "dk_grey", "black"), + lwds = c(0.5, 2, 3), + labels = c("Department", "Country", "Dominican Rep. frontier"), + title = "Administrative boundaries") + + # Add text labels - centered on admin 1 centroids + add_admin_labels(centroid_admin1, ADM1_FR_UPPER) + + # Add a compass + add_compass() + + # Add a scale bar + add_scale_bar() + + # Add credits + add_credits("Admin. boundaries. : CNIGS \nCoord. system: GCS WGS 1984") ``` - - -### Example 3: Dumbbell plot - -Remember to ensure that your data are in the long format and you only -have two groups on the x-axis; for instance, IDP and returnee and no NA -values. - -``` r -# Prepare long data -df <- tibble::tibble( - admin1 = rep(letters[1:8], 2), - setting = c(rep(c("Rural", "Urban"), 4), rep(c("Urban", "Rural"), 4)), - stat = rnorm(16, mean = 50, sd = 18) -) |> - dplyr::mutate(stat = round(stat, 0)) - - - - -# dumbbell( -# df, -# 'stat', -# 'setting', -# 'admin1', -# title = '% of HHs that reported open defecation as sanitation facility', -# group_y_title = 'Admin 1', -# group_x_title = 'Setting' -# ) -``` - -### Example 4: donut chart - -``` r -# Some summarized data: % of HHs by displacement status -df <- tibble::tibble( - status = c("Displaced", "Non displaced", "Returnee", "Don't know/Prefer not to say"), - percentage = c(18, 65, 12, 3) -) - -# Donut -# donut(df, -# status, -# percentage, -# hole_size = 3, -# add_text_suffix = '%', -# add_text_color = color('dark_grey'), -# add_text_treshold_display = 5, -# x_title = 'Displacement status', -# title = '% of HHs by displacement status' -# ) -``` - -### Example 5: Waffle chart - -``` r -# -# waffle(df, status, percentage, x_title = 'A caption', title = 'A title', subtitle = 'A subtitle') -``` - -### Example 6: Alluvial chart - -``` r -# Some summarized data: % of HHs by self-reported status of displacement in 2021 and in 2022 -df <- tibble::tibble( - status_from = c( - rep("Displaced", 4), - rep("Non displaced", 4), - rep("Returnee", 4), - rep("Dnk/Pnts", 4) - ), - status_to = c("Displaced", "Non displaced", "Returnee", "Dnk/Pnts", "Displaced", "Non displaced", "Returnee", "Dnk/Pnts", "Displaced", "Non displaced", "Returnee", "Dnk/Pnts", "Displaced", "Non displaced", "Returnee", "Dnk/Pnts"), - percentage = c(20, 8, 18, 1, 12, 21, 0, 2, 0, 3, 12, 1, 0, 0, 1, 1) -) - -# Alluvial, here the group is the status for 2021 - -# alluvial(df, -# status_from, -# status_to, -# percentage, -# status_from, -# from_levels = c("Displaced", "Non displaced", "Returnee", "Dnk/Pnts"), -# alpha = 0.8, -# group_title = "Status for 2021", -# title = "% of HHs by self-reported status from 2021 to 2022" -# ) -``` - -### Example 7: Lollipop chart - -``` r -library(tidyr) -# Prepare long data -df <- tibble::tibble( - admin1 = replicate(15, sample(letters, 8)) |> t() |> as.data.frame() |> unite("admin1", sep = "") |> dplyr::pull(admin1), - stat = rnorm(15, mean = 50, sd = 15) -) |> - dplyr::mutate(stat = round(stat, 0)) - -# Simple vertical lollipop chart -lollipop( - df = df, - x = "admin1", - y = "stat", - flip = FALSE, - dot_size = 3, - y_title = "% of HHs", - x_title = "Admin 1", - title = "% of HHs that received humanitarian assistance" -) -``` - - - -``` r - -# Horizontal lollipop chart with custom colors -hlollipop( - df = df, - x = "admin1", - y = "stat", - dot_size = 4, - line_size = 1, - add_color = color("cat_5_main_2"), - line_color = color("cat_5_main_4"), - y_title = "% of HHs", - x_title = "Admin 1", - title = "% of HHs that received humanitarian assistance" -) -``` - - - -``` r - -# Create data for grouped lollipop - using set.seed for reproducibility -set.seed(123) -df_grouped <- tibble::tibble( - admin1 = rep(c("A", "B", "C", "D", "E", "F"), 2), - group = rep(c("Group A", "Group B"), each = 6), - stat = c(rnorm(6, mean = 40, sd = 10), rnorm(6, mean = 60, sd = 10)) -) |> - dplyr::mutate(stat = round(stat, 0)) - -# Grouped lollipop chart with proper side-by-side positioning -lollipop( - df = df_grouped, - x = "admin1", - y = "stat", - group = "group", - order = "grouped_y", - dot_size = 3.5, - line_size = 0.8, - y_title = "Value", - x_title = "Category", - title = "True side-by-side grouped lollipop chart" -) -``` - - - -``` r - -# Horizontal grouped lollipop chart -hlollipop( - df = df_grouped, - x = "admin1", - y = "stat", - group = "group", - dot_size = 3.5, - line_size = 0.8, - y_title = "Category", - x_title = "Value", - title = "Horizontal side-by-side grouped lollipop chart" -) -``` - - +![Once exported with +`tmap::tmap_save()`.](man/figures/README-example-map.png) diff --git a/codecov.yml b/codecov.yml deleted file mode 100644 index 04c5585..0000000 --- a/codecov.yml +++ /dev/null @@ -1,14 +0,0 @@ -comment: false - -coverage: - status: - project: - default: - target: auto - threshold: 1% - informational: true - patch: - default: - target: auto - threshold: 1% - informational: true diff --git a/data-raw/border_admin0.dbf b/data-raw/border_admin0.dbf new file mode 100644 index 0000000..2cdd77c Binary files /dev/null and b/data-raw/border_admin0.dbf differ diff --git a/data-raw/border_admin0.prj b/data-raw/border_admin0.prj new file mode 100644 index 0000000..f8e4548 --- /dev/null +++ b/data-raw/border_admin0.prj @@ -0,0 +1 @@ +PROJCS["WGS_1984_UTM_Zone_18N",GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]],PROJECTION["Transverse_Mercator"],PARAMETER["False_Easting",500000.0],PARAMETER["False_Northing",0.0],PARAMETER["Central_Meridian",-75.0],PARAMETER["Scale_Factor",0.9996],PARAMETER["Latitude_Of_Origin",0.0],UNIT["m",1.0]] \ No newline at end of file diff --git a/data-raw/border_admin0.shp b/data-raw/border_admin0.shp new file mode 100644 index 0000000..559c58d Binary files /dev/null and b/data-raw/border_admin0.shp differ diff --git a/data-raw/border_admin0.shx b/data-raw/border_admin0.shx new file mode 100644 index 0000000..f4d8240 Binary files /dev/null and b/data-raw/border_admin0.shx differ diff --git a/data-raw/centroid_admin1.dbf b/data-raw/centroid_admin1.dbf new file mode 100644 index 0000000..f17bfb9 Binary files /dev/null and b/data-raw/centroid_admin1.dbf differ diff --git a/data-raw/centroid_admin1.prj b/data-raw/centroid_admin1.prj new file mode 100644 index 0000000..79392c5 --- /dev/null +++ b/data-raw/centroid_admin1.prj @@ -0,0 +1 @@ +GEOGCS["GCS_unknown",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]] \ No newline at end of file diff --git a/data-raw/centroid_admin1.shp b/data-raw/centroid_admin1.shp new file mode 100644 index 0000000..67811d2 Binary files /dev/null and b/data-raw/centroid_admin1.shp differ diff --git a/data-raw/centroid_admin1.shx b/data-raw/centroid_admin1.shx new file mode 100644 index 0000000..f6ca9fc Binary files /dev/null and b/data-raw/centroid_admin1.shx differ diff --git a/data-raw/frontier_admin0.dbf b/data-raw/frontier_admin0.dbf new file mode 100644 index 0000000..20c39d2 Binary files /dev/null and b/data-raw/frontier_admin0.dbf differ diff --git a/data-raw/frontier_admin0.prj b/data-raw/frontier_admin0.prj new file mode 100644 index 0000000..f45cbad --- /dev/null +++ b/data-raw/frontier_admin0.prj @@ -0,0 +1 @@ +GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]] \ No newline at end of file diff --git a/data-raw/frontier_admin0.shp b/data-raw/frontier_admin0.shp new file mode 100644 index 0000000..6a7c832 Binary files /dev/null and b/data-raw/frontier_admin0.shp differ diff --git a/data-raw/frontier_admin0.shx b/data-raw/frontier_admin0.shx new file mode 100644 index 0000000..aeb62b0 Binary files /dev/null and b/data-raw/frontier_admin0.shx differ diff --git a/data-raw/indicator_admin1.dbf b/data-raw/indicator_admin1.dbf new file mode 100644 index 0000000..9dd16e2 Binary files /dev/null and b/data-raw/indicator_admin1.dbf differ diff --git a/data-raw/indicator_admin1.prj b/data-raw/indicator_admin1.prj new file mode 100644 index 0000000..f45cbad --- /dev/null +++ b/data-raw/indicator_admin1.prj @@ -0,0 +1 @@ +GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]] \ No newline at end of file diff --git a/data-raw/indicator_admin1.shp b/data-raw/indicator_admin1.shp new file mode 100644 index 0000000..cd956a4 Binary files /dev/null and b/data-raw/indicator_admin1.shp differ diff --git a/data-raw/indicator_admin1.shx b/data-raw/indicator_admin1.shx new file mode 100644 index 0000000..114b1d3 Binary files /dev/null and b/data-raw/indicator_admin1.shx differ diff --git a/data-raw/line_admin1.dbf b/data-raw/line_admin1.dbf new file mode 100644 index 0000000..27046d0 Binary files /dev/null and b/data-raw/line_admin1.dbf differ diff --git a/data-raw/line_admin1.prj b/data-raw/line_admin1.prj new file mode 100644 index 0000000..f45cbad --- /dev/null +++ b/data-raw/line_admin1.prj @@ -0,0 +1 @@ +GEOGCS["GCS_WGS_1984",DATUM["D_WGS_1984",SPHEROID["WGS_1984",6378137.0,298.257223563]],PRIMEM["Greenwich",0.0],UNIT["Degree",0.0174532925199433]] \ No newline at end of file diff --git a/data-raw/line_admin1.shp b/data-raw/line_admin1.shp new file mode 100644 index 0000000..5a39a4b Binary files /dev/null and b/data-raw/line_admin1.shp differ diff --git a/data-raw/line_admin1.shx b/data-raw/line_admin1.shx new file mode 100644 index 0000000..e078d09 Binary files /dev/null and b/data-raw/line_admin1.shx differ diff --git a/data-raw/shapefiles.R b/data-raw/shapefiles.R new file mode 100644 index 0000000..13db57a --- /dev/null +++ b/data-raw/shapefiles.R @@ -0,0 +1,21 @@ + +#------ Border - admin 0 +border_admin0 <- sf::st_read("data-raw/border_admin0.shp") +usethis::use_data(border_admin0, overwrite = TRUE) + +#------ Frontier - admin 0 +frontier_admin0 <- sf::st_read("data-raw/frontier_admin0.shp") +usethis::use_data(frontier_admin0, overwrite = TRUE) + +#------ Line - admin 1 +line_admin1 <- sf::st_read("data-raw/line_admin1.shp") +usethis::use_data(line_admin1, overwrite = TRUE) + +#------ Centroid - admin 1 +centroid_admin1 <- sf::st_read("data-raw/centroid_admin1.shp") |> + dplyr::rename(ADM1_FR_UPPER = ADM1_FR_) +usethis::use_data(centroid_admin1, overwrite = TRUE) + +#------ Indicator polygon - admin 1 +indicator_admin1 <- sf::st_read("data-raw/indicator_admin1.shp") +usethis::use_data(indicator_admin1, overwrite = TRUE) diff --git a/data/border_admin0.rda b/data/border_admin0.rda new file mode 100644 index 0000000..a6400e1 Binary files /dev/null and b/data/border_admin0.rda differ diff --git a/data/centroid_admin1.rda b/data/centroid_admin1.rda new file mode 100644 index 0000000..f144be5 Binary files /dev/null and b/data/centroid_admin1.rda differ diff --git a/data/frontier_admin0.rda b/data/frontier_admin0.rda new file mode 100644 index 0000000..b57263a Binary files /dev/null and b/data/frontier_admin0.rda differ diff --git a/data/indicator_admin1.rda b/data/indicator_admin1.rda new file mode 100644 index 0000000..f1a1a63 Binary files /dev/null and b/data/indicator_admin1.rda differ diff --git a/data/line_admin1.rda b/data/line_admin1.rda new file mode 100644 index 0000000..9393fdd Binary files /dev/null and b/data/line_admin1.rda differ diff --git a/docs/404.html b/docs/404.html index 20db6f0..c75726d 100644 --- a/docs/404.html +++ b/docs/404.html @@ -13,8 +13,8 @@ - - + + @@ -31,7 +31,7 @@ visualizeR - 0.8.9000 + 0.3.9000 - - - - - -
-
-
-

Simple bar chart

- Source: R/bar.R -
bar.Rd
-
- -
-

Simple bar chart

-
- -
-

Usage

- 
bar(
-  df,
-  x,
-  y,
-  group = NULL,
-  flip = TRUE,
-  percent = TRUE,
-  wrap = NULL,
-  position = "dodge",
-  alpha = 1,
-  x_title = NULL,
-  y_title = NULL,
-  group_title = NULL,
-  title = NULL,
-  subtitle = NULL,
-  caption = NULL,
-  add_text = FALSE,
-  add_text_suffix = "",
-  theme = theme_reach()
-)
-
- -
-

Arguments

-
df
-

A data frame.

- - -
x
-

A numeric column.

- - -
y
-

A character column or coercible as a character column.

- - -
group
-

Some grouping categorical column, e.g. administrative areas or population groups.

- - -
flip
-

TRUE or FALSE. Default to TRUE or horizontal bar plot.

- - -
percent
-

TRUE or FALSE. Should the x-labels (and text labels if present) be displayed as percentages? Default to TRUE.

- - -
wrap
-

Should x-labels be wrapped? Number of characters.

- - -
position
-

Should the chart be stacked? Default to "dodge". Can take "dodge" and "stack".

- - -
alpha
-

Fill transparency.

- - -
x_title
-

The x scale title. Default to NULL.

- - -
y_title
-

The y scale title. Default to NULL.

- - -
group_title
-

The group legend title. Default to NULL.

- - -
title
-

Plot title. Default to NULL.

- - -
subtitle
-

Plot subtitle. Default to NULL.

- - -
caption
-

Plot caption. Default to NULL.

- - -
add_text
-

TRUE or FALSE. Add the value as text.

- - -
add_text_suffix
-

If percent is FALSE, should we add a suffix to the text label?

- - -
theme
-

Whatever theme. Default to theme_reach().

- -
-
-

Value

- - -

A bar chart

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/bar_reach.html b/docs/reference/bar_reach.html new file mode 100644 index 0000000..4227377 --- /dev/null +++ b/docs/reference/bar_reach.html @@ -0,0 +1,196 @@ + +Simple bar chart — bar_reach • visualizeR + Skip to contents + + +
+
+
+

Simple bar chart

+ Source: R/bar.R +
bar_reach.Rd
+
+ +
+

`ggblanket` as internals for deciding whether the bar chart is horizontally readable.

+
+ +
+

Usage

+ 
bar_reach(
+  df,
+  x,
+  y,
+  group = NULL,
+  percent = TRUE,
+  palette = "main",
+  reverse = FALSE,
+  family = "Leelawadee",
+  alpha = 1,
+  width = 0.5,
+  x_title = NULL,
+  y_title = NULL,
+  group_title = NULL,
+  position = "dodge",
+  title = NULL,
+  subtitle = NULL,
+  caption = NULL,
+  text_size = 10,
+  title_size = 14,
+  legend_position = "right",
+  legend_rev = TRUE,
+  ...
+)
+
+ +
+

Arguments

+
df
+

A data frame.

+ + +
x
+

A numeric column.

+ + +
y
+

A character column or coercible as a character column.

+ + +
group
+

Some grouping categorical column, e.g. administrative areas or population groups.

+ + +
percent
+

TRUE or FALSE. Should the x-labels be displayed as percentages? Default to TRUE.

+ + +
palette
+

Palette name from 'pal_reach()'.

+ + +
reverse
+

Boolean indicating whether the palette should be reversed.

+ + +
family
+

The font family for all plot's texts. Default to "Leelawadee".

+ + +
alpha
+

Transparency.

+ + +
width
+

Width.

+ + +
x_title
+

The x scale title. Default to NULL.

+ + +
y_title
+

The y scale title. Default to NULL.

+ + +
group_title
+

The group legend title. Default to NULL.

+ + +
position
+

Should the chart be stacked? Default to "dodge". Can take "dodge" and "stack".

+ + +
title
+

Plot title. Default to NULL.

+ + +
subtitle
+

Plot subtitle. Default to NULL.

+ + +
caption
+

Caption title string. Default to NULL.

+ + +
text_size
+

The size of all text other than the title, subtitle and caption. Defaults to 10.

+ + +
title_size
+

The size of the title text. Defaults to 14.

+ + +
legend_position
+

Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none".

+ + +
legend_rev
+

Reverse the color in the guide? Default to TRUE.

+ + +
...
+

Other arguments to be passed to "ggblanket::gg_col"

+ +
+
+

Value

+ + +

A bar chart

+
+ +
+ + +
+

Developed by Noblet Guillaume.

+
+ +
+

Site built with pkgdown 2.0.7.

+
+ +
+ + + + + + + diff --git a/docs/reference/border_admin0.html b/docs/reference/border_admin0.html index 39a141c..91e1989 100644 --- a/docs/reference/border_admin0.html +++ b/docs/reference/border_admin0.html @@ -1,5 +1,5 @@ -Haïti border. — border_admin0 • visualizeRHaïti border. — border_admin0 • visualizeR @@ -10,7 +10,7 @@ visualizeR - 0.8.9000 + 0.3.9000 - - - - - -
-
-
-

Simple donut chart (to be used parsimoniously), can be a pie chart

- Source: R/donut.R -
donut.Rd
-
- -
-

Simple donut chart (to be used parsimoniously), can be a pie chart

-
- -
-

Usage

- 
donut(
-  df,
-  x,
-  y,
-  alpha = 1,
-  x_title = NULL,
-  title = NULL,
-  subtitle = NULL,
-  caption = NULL,
-  arrange = TRUE,
-  hole_size = 3,
-  add_text = TRUE,
-  add_text_treshold_display = 5,
-  add_text_color = "white",
-  add_text_suffix = "",
-  theme = theme_reach(legend_reverse = TRUE)
-)
-
- -
-

Arguments

-
df
-

A data frame.

- - -
x
-

A character column or coercible as a character column. Will give the donut's fill color.

- - -
y
-

A numeric column.

- - -
alpha
-

Fill transparency.

- - -
x_title
-

The x scale title. Default to NULL.

- - -
title
-

Plot title. Default to NULL.

- - -
subtitle
-

Plot subtitle. Default to NULL.

- - -
caption
-

Plot caption. Default to NULL.

- - -
arrange
-

TRUE or FALSE. Arrange by highest percentage first.

- - -
hole_size
-

Hole size. Default to 3. If less than 2, back to a pie chart.

- - -
add_text
-

TRUE or FALSE. Add the value as text.

- - -
add_text_treshold_display
-

Minimum value to add the text label.

- - -
add_text_color
-

Text color.

- - -
add_text_suffix
-

If percent is FALSE, should we add a suffix to the text label?

- - -
theme
-

Whatever theme. Default to theme_reach().

- -
-
-

Value

- - -

A donut chart to be used parsimoniously

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/dumbbell.html b/docs/reference/dumbbell.html deleted file mode 100644 index cf857bd..0000000 --- a/docs/reference/dumbbell.html +++ /dev/null @@ -1,201 +0,0 @@ - -Make dumbbell chart. — dumbbell • visualizeR - Skip to contents - - -
-
-
-

Make dumbbell chart.

- Source: R/dumbbell.R -
dumbbell.Rd
-
- -
-

Make dumbbell chart.

-
- -
-

Usage

- 
dumbbell(
-  df,
-  col,
-  group_x,
-  group_y,
-  point_size = 5,
-  point_alpha = 1,
-  segment_size = 2.5,
-  segment_color = cols_reach("main_lt_grey"),
-  group_x_title = NULL,
-  group_y_title = NULL,
-  x_title = NULL,
-  title = NULL,
-  subtitle = NULL,
-  caption = NULL,
-  line_to_y_axis = TRUE,
-  line_to_y_axis_type = 3,
-  line_to_y_axis_width = 0.5,
-  line_to_y_axis_color = cols_reach("main_grey"),
-  add_text = TRUE,
-  add_text_vjust = 2,
-  add_text_size = 3.5,
-  add_text_color = cols_reach("main_grey"),
-  theme = theme_reach(palette = "primary")
-)
-
- -
-

Arguments

-
df
-

A data frame.

- - -
col
-

A numeric column.

- - -
group_x
-

The grouping column on the x-axis; only two groups.

- - -
group_y
-

The grouping column on the y-axis.

- - -
point_size
-

Point size.

- - -
point_alpha
-

Point alpha.

- - -
segment_size
-

Segment size.

- - -
segment_color
-

Segment color.

- - -
group_x_title
-

X-group and legend title.

- - -
group_y_title
-

Y-axis and group title.

- - -
x_title
-

X-axis title.

- - -
title
-

Title.

- - -
subtitle
-

Subtitle.

- - -
caption
-

Caption.

- - -
line_to_y_axis
-

TRUE or FALSE; add a line connected points and Y-axis.

- - -
line_to_y_axis_type
-

Line to Y-axis type.

- - -
line_to_y_axis_width
-

Line to Y-axis width.

- - -
line_to_y_axis_color
-

Line to Y-axis color.

- - -
add_text
-

TRUE or FALSE; add text at the points.

- - -
add_text_vjust
-

Vertical adjustment.

- - -
add_text_size
-

Text size.

- - -
add_text_color
-

Text color.

- - -
theme
-

A ggplot2 theme, default to `theme_reach()`

- -
-
-

Value

- - -

A dumbbell chart.

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/figures/README-example-alluvial-plot-1.png b/docs/reference/figures/README-example-alluvial-plot-1.png deleted file mode 100644 index 33a0499..0000000 Binary files a/docs/reference/figures/README-example-alluvial-plot-1.png and /dev/null differ diff --git a/docs/reference/figures/README-example-bar-chart-1.png b/docs/reference/figures/README-example-bar-chart-1.png index cc3c997..d423d85 100644 Binary files a/docs/reference/figures/README-example-bar-chart-1.png and b/docs/reference/figures/README-example-bar-chart-1.png differ diff --git a/docs/reference/figures/README-example-bar-chart-2.png b/docs/reference/figures/README-example-bar-chart-2.png index e5cbaad..d6639d8 100644 Binary files a/docs/reference/figures/README-example-bar-chart-2.png and b/docs/reference/figures/README-example-bar-chart-2.png differ diff --git a/docs/reference/figures/README-example-bar-chart-3.png b/docs/reference/figures/README-example-bar-chart-3.png deleted file mode 100644 index f4b8b7e..0000000 Binary files a/docs/reference/figures/README-example-bar-chart-3.png and /dev/null differ diff --git a/docs/reference/figures/README-example-donut-plot-1.png b/docs/reference/figures/README-example-donut-plot-1.png deleted file mode 100644 index d30c943..0000000 Binary files a/docs/reference/figures/README-example-donut-plot-1.png and /dev/null differ diff --git a/docs/reference/figures/README-example-dumbbell-plot-1.png b/docs/reference/figures/README-example-dumbbell-plot-1.png deleted file mode 100644 index 06ead24..0000000 Binary files a/docs/reference/figures/README-example-dumbbell-plot-1.png and /dev/null differ diff --git a/docs/reference/figures/README-example-lollipop-chart-1.png b/docs/reference/figures/README-example-lollipop-chart-1.png deleted file mode 100644 index 0decaf1..0000000 Binary files a/docs/reference/figures/README-example-lollipop-chart-1.png and /dev/null differ diff --git a/docs/reference/figures/README-example-lollipop-chart-2.png b/docs/reference/figures/README-example-lollipop-chart-2.png deleted file mode 100644 index 0897e8e..0000000 Binary files a/docs/reference/figures/README-example-lollipop-chart-2.png and /dev/null differ diff --git a/docs/reference/figures/README-example-map.png b/docs/reference/figures/README-example-map.png index 3e671f9..ce2727b 100644 Binary files a/docs/reference/figures/README-example-map.png and b/docs/reference/figures/README-example-map.png differ diff --git a/docs/reference/figures/README-example-point-chart-1.png b/docs/reference/figures/README-example-point-chart-1.png index f705a3d..ded89e0 100644 Binary files a/docs/reference/figures/README-example-point-chart-1.png and b/docs/reference/figures/README-example-point-chart-1.png differ diff --git a/docs/reference/figures/README-example-point-chart-2.png b/docs/reference/figures/README-example-point-chart-2.png index 76ef877..7fe5e16 100644 Binary files a/docs/reference/figures/README-example-point-chart-2.png and b/docs/reference/figures/README-example-point-chart-2.png differ diff --git a/docs/reference/figures/README-example-point-chart-3.png b/docs/reference/figures/README-example-point-chart-3.png index b32aa89..f102ee0 100644 Binary files a/docs/reference/figures/README-example-point-chart-3.png and b/docs/reference/figures/README-example-point-chart-3.png differ diff --git a/docs/reference/figures/README-example-waffke-plot-1.png b/docs/reference/figures/README-example-waffke-plot-1.png deleted file mode 100644 index a750983..0000000 Binary files a/docs/reference/figures/README-example-waffke-plot-1.png and /dev/null differ diff --git a/docs/reference/figures/README-example-waffle-plot-1.png b/docs/reference/figures/README-example-waffle-plot-1.png deleted file mode 100644 index 0183c5a..0000000 Binary files a/docs/reference/figures/README-example-waffle-plot-1.png and /dev/null differ diff --git a/docs/reference/frontier_admin0.html b/docs/reference/frontier_admin0.html index c106f92..a703d08 100644 --- a/docs/reference/frontier_admin0.html +++ b/docs/reference/frontier_admin0.html @@ -1,5 +1,5 @@ -Haïti frontier with Dominican Republic. — frontier_admin0 • visualizeRHaïti frontier with Dominican Republic. — frontier_admin0 • visualizeR @@ -10,7 +10,7 @@ visualizeR - 0.8.9000 + 0.3.9000 - - - - - -
-
-
-

Simple bar chart

- Source: R/lollipop.R -
lollipop.Rd
-
- -
-

Simple bar chart

-
- -
-

Usage

- 
lollipop(
-  df,
-  x,
-  y,
-  flip = TRUE,
-  wrap = NULL,
-  arrange = TRUE,
-  point_size = 3,
-  point_color = cols_reach("main_red"),
-  point_alpha = 1,
-  segment_size = 1,
-  segment_color = cols_reach("main_grey"),
-  segment_alpha = 1,
-  alpha = 1,
-  x_title = NULL,
-  y_title = NULL,
-  title = NULL,
-  subtitle = NULL,
-  caption = NULL,
-  add_text = FALSE,
-  add_text_size = 3,
-  add_text_suffix = "",
-  add_text_color = "white",
-  add_text_fontface = "bold",
-  theme = theme_reach()
-)
-
- -
-

Arguments

-
df
-

A data frame.

- - -
x
-

A numeric column.

- - -
y
-

A character column or coercible as a character column.

- - -
flip
-

TRUE or FALSE. Default to TRUE or horizontal lollipop plot.

- - -
wrap
-

Should x-labels be wrapped? Number of characters.

- - -
arrange
-

TRUE or FALSE. Arrange by highest percentage first.

- - -
point_size
-

Point size.

- - -
point_color
-

Point color.

- - -
point_alpha
-

Point alpha.

- - -
segment_size
-

Segment size.

- - -
segment_color
-

Segment color.

- - -
segment_alpha
-

Segment alpha.

- - -
alpha
-

Fill transparency.

- - -
x_title
-

The x scale title. Default to NULL.

- - -
y_title
-

The y scale title. Default to NULL.

- - -
title
-

Plot title. Default to NULL.

- - -
subtitle
-

Plot subtitle. Default to NULL.

- - -
caption
-

Plot caption. Default to NULL.

- - -
add_text
-

TRUE or FALSE. Add the y value as text within the bubble.

- - -
add_text_size
-

Text size.

- - -
add_text_suffix
-

If percent is FALSE, should we add a suffix to the text label?

- - -
add_text_color
-

Added text color. Default to white.

- - -
add_text_fontface
-

Added text font face. Default to "bold".

- - -
theme
-

Whatever theme. Default to theme_reach().

- -
-
-

Value

- - -

A bar chart

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/pal_agora.html b/docs/reference/pal_agora.html index a8ffc82..5720399 100644 --- a/docs/reference/pal_agora.html +++ b/docs/reference/pal_agora.html @@ -1,5 +1,5 @@ -Return function to interpolate an AGORA color palette — pal_agora • visualizeRReturn function to interpolate an AGORA color palette — pal_agora • visualizeR @@ -10,7 +10,7 @@ visualizeR - 0.8.9000 + 0.3.9000 - - - - - -
-
-
-

Return function to interpolate a fallback palette base on viridis::magma()

- Source: R/pal_fallback.R -
pal_fallback.Rd
-
- -
-

Return function to interpolate a fallback palette base on viridis::magma()

-
- -
-

Usage

- 
pal_fallback(
-  reverse = FALSE,
-  color_ramp_palette = FALSE,
-  discrete = FALSE,
-  n = 5,
-  ...
-)
-
- -
-

Arguments

-
reverse
-

Boolean indicating whether the palette should be reversed

- - -
color_ramp_palette
-

Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the latter with `FALSE`

- - -
discrete
-

Boolean. Discrete or not? Default to FALSE.

- - -
n
-

Number of colors in the palette. Default to 5. Passe to `viridis::magma()`

- - -
...
-

Other parameters to pass to `grDevices::colorRampPalette()`

- -
-
-

Value

- - -

A color palette

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/pal_impact.html b/docs/reference/pal_impact.html index 14528c7..bc0249c 100644 --- a/docs/reference/pal_impact.html +++ b/docs/reference/pal_impact.html @@ -1,5 +1,5 @@ -Return function to interpolate an IMPACT color palette — pal_impact • visualizeRReturn function to interpolate an IMPACT color palette — pal_impact • visualizeR @@ -10,7 +10,7 @@ visualizeR - 0.8.9000 + 0.3.9000 - - - - - -
-
-
-

Simple point chart

- Source: R/point.R -
point.Rd
-
- -
-

Simple point chart

-
- -
-

Usage

- 
point(
-  df,
-  x,
-  y,
-  group = NULL,
-  flip = TRUE,
-  alpha = 1,
-  size = 1,
-  x_title = NULL,
-  y_title = NULL,
-  group_title = NULL,
-  title = NULL,
-  subtitle = NULL,
-  caption = NULL,
-  theme = theme_reach()
-)
-
- -
-

Arguments

-
df
-

A data frame.

- - -
x
-

A numeric column.

- - -
y
-

A character column or coercible as a character column.

- - -
group
-

Some grouping categorical column, e.g. administrative areas or population groups.

- - -
flip
-

TRUE or FALSE. Default to TRUE or horizontal bar plot.

- - -
alpha
-

Fill transparency.

- - -
size
-

Point size.

- - -
x_title
-

The x scale title. Default to NULL.

- - -
y_title
-

The y scale title. Default to NULL.

- - -
group_title
-

The group legend title. Default to NULL.

- - -
title
-

Plot title. Default to NULL.

- - -
subtitle
-

Plot subtitle. Default to NULL.

- - -
caption
-

Plot caption. Default to NULL.

- - -
theme
-

Whatever theme. Default to theme_reach().

- -
-
-

Value

- - -

A bar chart

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/alluvial.html b/docs/reference/point_reach.html similarity index 69% rename from docs/reference/alluvial.html rename to docs/reference/point_reach.html index d15cf4e..36bbf52 100644 --- a/docs/reference/alluvial.html +++ b/docs/reference/point_reach.html @@ -1,5 +1,5 @@ -Simple alluvial chart — alluvial • visualizeRSimple point chart — point_reach • visualizeR @@ -10,7 +10,7 @@ visualizeR - 0.8.9000 + 0.3.9000 - - - - - -
-
-
-

visualizeR: What a color! What a viz!

- Source: R/visualizeR-package.R -
visualizeR-package.Rd
-
- -
-

-

It basically provides colors as hex codes, color palettes, and some viz functions (graphs and maps).

-
- - -
-

See also

-

Useful links:

-
-
-

Author

-

Maintainer: Noblet Guillaume gnoblet@zaclys.net

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/reference/waffle.html b/docs/reference/waffle.html deleted file mode 100644 index b686926..0000000 --- a/docs/reference/waffle.html +++ /dev/null @@ -1,147 +0,0 @@ - -Simple waffle chart — waffle • visualizeR - Skip to contents - - -
-
-
-

Simple waffle chart

- Source: R/waffle.R -
waffle.Rd
-
- -
-

Simple waffle chart

-
- -
-

Usage

- 
waffle(
-  df,
-  x,
-  y,
-  n_rows = 10,
-  size = 2,
-  x_title = NULL,
-  x_lab = NULL,
-  title = NULL,
-  subtitle = NULL,
-  caption = NULL,
-  arrange = TRUE,
-  theme = theme_reach(axis_x = FALSE, axis_y = FALSE, legend_position = "bottom",
-    legend_direction = "horizontal", title_hjust = 0.5)
-)
-
- -
-

Arguments

-
df
-

A data frame.

- - -
x
-

A character column or coercible as a character column. Will give the waffle's fill color.

- - -
y
-

A numeric column (if plotting proportion, make sure to have percentages between 0 and 100 and not 0 and 1).

- - -
n_rows
-

Number of rows. Default to 10.

- - -
size
-

Width of the separator between blocks (defaults to 2).

- - -
x_title
-

The x scale title. Default to NULL.

- - -
x_lab
-

The x scale caption. Default to NULL.

- - -
title
-

Plot title. Default to NULL.

- - -
subtitle
-

Plot subtitle. Default to NULL.

- - -
caption
-

Plot caption. Default to NULL.

- - -
arrange
-

TRUE or FALSE. Arrange by highest percentage first.

- - -
theme
-

Whatever theme. Default to theme_reach().

- -
-
-

Value

- - -

A waffle chart

-
- -
- - -
-

Developed by Noblet Guillaume.

-
- -
-

Site built with pkgdown 2.0.7.

-
- -
- - - - - - - diff --git a/docs/search.json b/docs/search.json index a6de609..9b9c17f 100644 --- a/docs/search.json +++ b/docs/search.json @@ -1 +1 @@ -[{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. protect rights, need prevent others denying rights asking surrender rights. Therefore, certain responsibilities distribute copies software, modify : responsibilities respect freedom others. example, distribute copies program, whether gratis fee, must pass recipients freedoms received. must make sure , , receive can get source code. must show terms know rights. 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States allow patents restrict development use software general-purpose computers, , wish avoid special danger patents applied free program make effectively proprietary. prevent , GPL assures patents used render program non-free. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. 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Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see . GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read .","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . Copyright (C) This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://gnoblet.github.io/visualizeR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Noblet Guillaume. Author, maintainer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Guillaume N (2023). visualizeR: color! viz!. https://github.com/gnoblet/visualizeR, https://gnoblet.github.io/visualizeR/.","code":"@Manual{, title = {visualizeR: What a color! What a viz!}, author = {Noblet Guillaume}, year = {2023}, note = {https://github.com/gnoblet/visualizeR, https://gnoblet.github.io/visualizeR/}, }"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"visualizer-","dir":"","previous_headings":"","what":"What a color! What a viz!","title":"What a color! What a viz!","text":"color! viz! visualizeR proposes utils get REACH AGORA colors, ready--go color palettes, visualization functions (horizontal hist graph instance).","code":""},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"What a color! What a viz!","text":"can install last version visualizeR GitHub :","code":"# install.packages(\"devtools\") devtools::install_github(\"gnoblet/visualizeR\", build_vignettes = TRUE)"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"roadmap","dir":"","previous_headings":"","what":"Roadmap","title":"What a color! What a viz!","text":"Roadmap follows: [X] Add IMPACT’s colors [X] Add color palettes internal documentation [ ] remains added --7-color palettes black color palettes [X] Add new types visualization (e.g. dumbbell plot, lollipop plot, etc.) [X] Use examples [ ] Add ease-map functions [ ] Add interactive functions (maps graphs) [ ] Consolidate make errors transparent","code":""},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"request","dir":"","previous_headings":"","what":"Request","title":"What a color! What a viz!","text":"Please, hesitate pull request new viz colors color palettes, email request change (guillaume.noblet@reach-initiative.org gnoblet@zaclys.net).","code":""},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"colors","dir":"","previous_headings":"","what":"Colors","title":"What a color! What a viz!","text":"Color palettes REACH, AGORA IMPACT available. Functions access colors palettes cols_initiative() pal_initiative(). now, initiative colors color palettes REACH. Feel free pull requests new AGORA IMPACT colors.","code":"library(visualizeR) # Get all saved REACH colors, named cols_reach(unnamed = F)[1:10] #> white black main_grey main_red main_lt_grey main_beige #> \"#FFFFFF\" \"#000000\" \"#58585A\" \"#EE5859\" \"#C7C8CA\" \"#D2CBB8\" #> iroise_1 iroise_2 iroise_3 iroise_4 #> \"#DFECEF\" \"#B1D7E0\" \"#699DA3\" \"#236A7A\" # Extract a color palette as hexadecimal codes and reversed pal_reach(palette = \"main\", reversed = TRUE, color_ramp_palette = FALSE) #> [1] \"#58585A\" \"#EE5859\" \"#C7C8CA\" \"#D2CBB8\" # Get all color palettes names pal_reach(show_palettes = T) #> [1] \"main\" \"primary\" \"secondary\" \"two_dots\" #> [5] \"two_dots_flashy\" \"red_main\" \"red_main_5\" \"red_alt\" #> [9] \"red_alt_5\" \"iroise\" \"iroise_5\" \"discrete_6\" #> [13] \"red_2\" \"red_3\" \"red_4\" \"red_5\" #> [17] \"red_6\" \"red_7\" \"green_2\" \"green_3\" #> [21] \"green_4\" \"green_5\" \"green_6\" \"green_7\" #> [25] \"artichoke_2\" \"artichoke_3\" \"artichoke_4\" \"artichoke_5\" #> [29] \"artichoke_6\" \"artichoke_7\" \"blue_2\" \"blue_3\" #> [33] \"blue_4\" \"blue_5\" \"blue_6\" \"blue_7\""},{"path":[]},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-1-bar-chart-already-reach-themed","dir":"","previous_headings":"Charts","what":"Example 1: Bar chart, already REACH themed","title":"What a color! What a viz!","text":"","code":"library(visualizeR) library(palmerpenguins) library(dplyr) df <- penguins |> group_by(island, species) |> summarize( mean_bl = mean(bill_length_mm, na.rm = T), mean_fl = mean(flipper_length_mm, na.rm = T)) |> ungroup() # Simple bar chart by group with some alpha transparency bar(df, island, mean_bl, species, percent = FALSE, alpha = 0.6, x_title = \"Mean of bill length\") # Using another color palette through `theme_reach()` and changing scale to percent bar(df, island,mean_bl, species, percent = TRUE, theme = theme_reach(palette = \"artichoke_3\")) # Not flipped, with text added, group_title, no y-axis and no bold for legend bar(df, island, mean_bl, species, group_title = \"Species\", flip = FALSE, add_text = TRUE, add_text_suffix = \"%\", percent = FALSE, theme = theme_reach(text_font_face = \"plain\", axis_y = FALSE))"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-2-point-chart-already-reach-themed","dir":"","previous_headings":"Charts","what":"Example 2: Point chart, already REACH themed","title":"What a color! What a viz!","text":"stage, point_reach() supports categorical grouping colors group arg.","code":"# Simple point chart point(penguins, bill_length_mm, flipper_length_mm) # Point chart with grouping colors, greater dot size, some transparency, reversed color palette point(penguins, bill_length_mm, flipper_length_mm, island, alpha = 0.6, size = 3, theme = theme_reach(reverse = TRUE)) # Using another color palettes point(penguins, bill_length_mm, flipper_length_mm, island, size = 1.5, x_title = \"Bill\", y_title = \"Flipper\", title = \"Length (mm)\", theme = theme_reach(palette = \"artichoke_3\", text_font_face = , grid_major_x = TRUE, title_position_to_plot = FALSE))"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-3-dumbbell-plot-reach-themed","dir":"","previous_headings":"Charts","what":"Example 3: Dumbbell plot, REACH themed","title":"What a color! What a viz!","text":"Remember ensure data long format two groups x-axis; instance, IDP returnee NA values.","code":"# Prepare long data df <- tibble::tibble( admin1 = rep(letters[1:8], 2), setting = c(rep(c(\"Rural\", \"Urban\"), 4), rep(c(\"Urban\", \"Rural\"), 4)), stat = rnorm(16, mean = 50, sd = 18) ) |> dplyr::mutate(stat = round(stat, 0)) # Example, adding a parameter to `theme_reach()` passed on `ggplot2::theme()` to align legend title dumbbell(df, stat, setting, admin1, title = \"% of HHs that reported open defecation as sanitation facility\", group_y_title = \"Admin 1\", group_x_title = \"Setting\", theme = theme_reach(legend_position = \"bottom\", legend_direction = \"horizontal\", legend_title_font_face = \"bold\", palette = \"primary\", title_position_to_plot = FALSE, legend.title.align = 0.5)) + # Change legend title position (could be included as part of the function) ggplot2::guides( color = ggplot2::guide_legend(title.position = \"left\"), fill = ggplot2::guide_legend(title.position = \"left\") )"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-4-donut-chart-reach-themed-to-used-once-not-twice","dir":"","previous_headings":"Charts","what":"Example 4: donut chart, REACH themed (to used once, not twice)","title":"What a color! What a viz!","text":"","code":"# Some summarized data: % of HHs by displacement status df <- tibble::tibble( status = c(\"Displaced\", \"Non displaced\", \"Returnee\", \"Don't know/Prefer not to say\"), percentage = c(18, 65, 12, 3) ) # Donut donut(df, status, percentage, hole_size = 3, add_text_suffix = \"%\", add_text_color = cols_reach(\"dk_grey\"), add_text_treshold_display = 5, x_title = \"Displacement status\", title = \"% of HHs by displacement status\", theme = theme_reach(legend_reverse = TRUE))"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-5-waffle-chart","dir":"","previous_headings":"Charts","what":"Example 5: waffle chart","title":"What a color! What a viz!","text":"","code":"# waffle(df, status, percentage, x_title = \"A caption\", title = \"A title\", subtitle = \"A subtitle\")"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-6-alluvial-chart-reach-themed","dir":"","previous_headings":"Charts","what":"Example 6: alluvial chart, REACH themed","title":"What a color! What a viz!","text":"","code":"# Some summarized data: % of HHs by self-reported status of displacement in 2021 and in 2022 df <- tibble::tibble( status_from = c(rep(\"Displaced\", 4), rep(\"Non displaced\", 4), rep(\"Returnee\", 4), rep(\"Dnk/Pnts\", 4)), status_to = c(\"Displaced\", \"Non displaced\", \"Returnee\", \"Dnk/Pnts\", \"Displaced\", \"Non displaced\", \"Returnee\", \"Dnk/Pnts\", \"Displaced\", \"Non displaced\", \"Returnee\", \"Dnk/Pnts\", \"Displaced\", \"Non displaced\", \"Returnee\", \"Dnk/Pnts\"), percentage = c(20, 8, 18, 1, 12, 21, 0, 2, 0, 3, 12, 1, 0, 0, 1, 1) ) # Alluvial, here the group is the status for 2021 alluvial(df, status_from, status_to, percentage, status_from, from_levels = c(\"Displaced\", \"Non displaced\", \"Returnee\", \"Dnk/Pnts\"), alpha = 0.8, group_title = \"Status for 2021\", title = \"% of HHs by self-reported status from 2021 to 2022\", theme = theme_reach( axis_y = FALSE, legend_position = \"none\"))"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-7-lollipop-chart","dir":"","previous_headings":"Charts","what":"Example 7: lollipop chart","title":"What a color! What a viz!","text":"","code":"library(tidyr) # Prepare long data df <- tibble::tibble( admin1 = replicate(15, sample(letters, 8)) |> t() |> as.data.frame() |> unite(\"admin1\", sep = \"\") |> dplyr::pull(admin1), stat = rnorm(15, mean = 50, sd = 15)) |> dplyr::mutate(stat = round(stat, 0)) # Make lollipop plot, REACH themed, vertical with 45 degrees angle X-labels lollipop(df, admin1, stat, arrange = FALSE, add_text = FALSE, flip = FALSE, y_title = \"% of HHs\", x_title = \"Admin 1\", title = \"% of HHs that reported having received a humanitarian assistance\", theme = theme_reach(axis_text_x_angle = 45, grid_major_y = TRUE, grid_major_y_size = 0.2, grid_major_x = TRUE, grid_minor_y = TRUE)) # Horizontal, greater point size, arranged by value, no grid, and text labels added lollipop(df, admin1, stat, arrange = TRUE, point_size = 10, point_color = cols_reach(\"main_beige\"), segment_size = 2, add_text = TRUE, add_text_suffix = \"%\", y_title = \"% of HHs\", x_title = \"Admin 1\", title = \"% of HHs that reported having received a humanitarian assistance in the 12 months prior to the assessment\", theme = theme_reach(title_position_to_plot = FALSE))"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"maps","dir":"","previous_headings":"","what":"Maps","title":"What a color! What a viz!","text":"exported tmap::tmap_save().","code":"# Add indicator layer # - based on \"pretty\" classes and title \"Proportion (%)\" # - buffer to add a 10% around the bounding box map <- add_indicator_layer( indicator_admin1, opn_dfc, buffer = 0.1) + # Layout - some defaults - add the map title add_layout(\"% of HH that reported open defecation as sanitation facility\") + # Admin boundaries as list of shape files (lines) and colors, line widths and labels as vectors add_admin_boundaries( lines = list(line_admin1, border_admin0, frontier_admin0), colors = cols_reach(\"main_lt_grey\", \"dk_grey\", \"black\"), lwds = c(0.5, 2, 3), labels = c(\"Department\", \"Country\", \"Dominican Rep. frontier\"), title = \"Administrative boundaries\") + # Add text labels - centered on admin 1 centroids add_admin_labels(centroid_admin1, ADM1_FR_UPPER) + # Add a compass add_compass() + # Add a scale bar add_scale_bar() + # Add credits add_credits(\"Admin. boundaries. : CNIGS \\nCoord. system: GCS WGS 1984\")"},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":null,"dir":"Reference","previous_headings":"","what":"Abord bad argument — abort_bad_argument","title":"Abord bad argument — abort_bad_argument","text":"Abord bad argument","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Abord bad argument — abort_bad_argument","text":"","code":"abort_bad_argument(arg, must, not = NULL)"},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Abord bad argument — abort_bad_argument","text":"arg argument must arg must Optional. arg must .","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Abord bad argument — abort_bad_argument","text":"stop statement","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":null,"dir":"Reference","previous_headings":"","what":"Add admin boundaries (lines) and the legend — add_admin_boundaries","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"Add admin boundaries (lines) legend","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"","code":"add_admin_boundaries( lines, colors, labels, lwds, title = \"\", buffer = NULL, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"lines List multiline shape defined sf package. colors Vector hexadecimal codes. order lines. labels Vector labels legend. order lines. lwds Vector line widths. order lines. title Legend title. buffer buffer, either one value vector 4 values (left, bottom, right, top). ... arguments pass shape `tmap::tm_lines()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"Wrapper around `tmap::tm_text()` sane defaults plotting admin labels.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"","code":"add_admin_labels( point, text, size = 0.5, fontface = \"bold\", fontfamily = \"Leelawadee\", shadow = TRUE, auto_placement = FALSE, remove_overlap = FALSE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"point Multipoint shape defined sf package. text Text labels column. size Relative size text labels. fontface Fontface. fontfamily Fontfamily. Leelawadee precious. shadow Boolean. Add shadow around text labels. Issue opened Github request. auto_placement Logical determines whether labels placed automatically. remove_overlap Logical determines whether overlapping labels removed. ... arguments pass `tmap::tm_text()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":null,"dir":"Reference","previous_headings":"","what":"Add a compass — add_compass","title":"Add a compass — add_compass","text":"Add compass","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add a compass — add_compass","text":"","code":"add_compass( text_size = 0.6, position = c(\"right\", 0.8), color_dark = cols_reach(\"black\"), text_color = cols_reach(\"black\"), type = \"4star\", ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add a compass — add_compass","text":"text_size Relative font size. position Position compass. Vector two values, specifying x y coordinates. color_dark Color dark parts compass. text_color color text. type Compass type, one : \"arrow\", \"4star\", \"8star\", \"radar\", \"rose\". ... arguments pass `tmap::tm_compass()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add a compass — add_compass","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":null,"dir":"Reference","previous_headings":"","what":"Do you want to credit someone or some institution? — add_credits","title":"Do you want to credit someone or some institution? — add_credits","text":"want credit someone institution?","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Do you want to credit someone or some institution? — add_credits","text":"","code":"add_credits(text, size = 0.4, bg_color = NA, position = c(0.75, 0.02), ...)"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Do you want to credit someone or some institution? — add_credits","text":"text Text. size Relative text size. bg_color Background color. position Position. Vector two coordinates. Usually somewhere . ... arguments pass `tmap::tm_credits()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Do you want to credit someone or some institution? — add_credits","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"Wrapper around `tmap::tm_polygons()` sane defaults plotting indicator values","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"","code":"add_indicator_layer( poly, col, buffer = NULL, n = 5, style = \"pretty\", palette = pal_reach(\"red_5\"), as_count = TRUE, color_na = cols_reach(\"white\"), text_na = \"Missing data\", legend_title = \"Proportion (%)\", legend_text_separator = \" - \", border_alpha = 1, border_col = cols_reach(\"lt_grey_1\"), lwd = 1, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"poly Multipolygon shape defined sf package. col Numeric attribute map. buffer buffer, either one value vector 4 values (left, bottom, right, top). n desire number classes. style Method process color scale continuous numerical variables. See `classInt::classIntervals()` details. palette Vector fill colors hexadecimal values. REACH color palettes, possible use `pal_reach()`. now,'palette' must changed manually, accordingly number drawn classes. as_count Boolean. col numeric variable, processed count variable? instance, 0, 1-10, 11-20. color_na Fill color missing data. text_na Legend text missing data. legend_title Legend title. legend_text_separator Text separator classes. E.g. \" \" give 0, 1 10, 11 20. border_alpha Transparency border. border_col Color border. lwd Linewidth border. ... arguments pass `tmap::tm_polygons()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_layout.html","id":null,"dir":"Reference","previous_headings":"","what":"Basic defaults based on `tmap::tm_layout()` — add_layout","title":"Basic defaults based on `tmap::tm_layout()` — add_layout","text":"Basic defaults based `tmap::tm_layout()`","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_layout.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Basic defaults based on `tmap::tm_layout()` — add_layout","text":"","code":"add_layout( title = NULL, legend_position = c(0.02, 0.5), frame = FALSE, legend_frame = cols_reach(\"main_grey\"), legend_text_size = 0.6, legend_title_size = 0.8, title_size = 0.9, title_fontface = \"bold\", title_color = cols_reach(\"main_grey\"), fontfamily = \"Leelawadee\", ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_layout.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Basic defaults based on `tmap::tm_layout()` — add_layout","text":"title Map title. legend_position Legend position. map good start. frame Boolean. Legend frame? legend_frame Legend frame color. legend_text_size Legend text size 'pt'. legend_title_size Legend title size 'pt'. title_size Title text size 'pt'. title_fontface Title fontface. Bold wanna exemplify lot . title_color Title font color. fontfamily Overall fontfamily. Leelawadee precious. ... arguments pass `tmap::tm_layout()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_layout.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Basic defaults based on `tmap::tm_layout()` — add_layout","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_scale_bar.html","id":null,"dir":"Reference","previous_headings":"","what":"Add a scale bar — add_scale_bar","title":"Add a scale bar — add_scale_bar","text":"Add scale bar","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_scale_bar.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add a scale bar — add_scale_bar","text":"","code":"add_scale_bar( text_size = 0.6, position = c(\"left\", 0.01), color_dark = cols_reach(\"black\"), breaks = c(0, 50, 100), ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_scale_bar.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add a scale bar — add_scale_bar","text":"text_size Relative font size. position Position compass. Vector two values, specifying x y coordinates. color_dark Color dark parts compass. breaks Breaks scale bar. specified, breaks automatically chosen given prefered width scale bar. Example: c(0, 50, 100). ... arguments pass `tmap::tm_compass()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_scale_bar.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add a scale bar — add_scale_bar","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/alluvial.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple alluvial chart — alluvial","title":"Simple alluvial chart — alluvial","text":"Simple alluvial chart","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/alluvial.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple alluvial chart — alluvial","text":"","code":"alluvial( df, from, to, value, group = NULL, alpha = 0.5, from_levels = NULL, value_title = NULL, group_title = NULL, title = NULL, subtitle = NULL, caption = NULL, rect_color = cols_reach(\"white\"), rect_border_color = cols_reach(\"main_grey\"), rect_text_color = cols_reach(\"main_grey\"), theme = theme_reach(axis_y = FALSE, legend_position = \"none\") )"},{"path":"https://gnoblet.github.io/visualizeR/reference/alluvial.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple alluvial chart — alluvial","text":"df data frame. character column upstream stratum. character column downstream stratum. value numeric column values. group grouping column fill alluvium . alpha Fill transparency. Default 0.5. from_levels Order given levels? value_title value/y scale title. Default NULL. group_title group title. Default NULL. title Plot title. Default NULL. subtitle Plot subtitle. Default NULL. caption Plot caption. Default NULL. rect_color Stratum rectangles' fill color. rect_border_color Stratum rectangles' border color. rect_text_color Stratum rectangles' text color. theme Whatever theme. Default theme_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/alluvial.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple alluvial chart — alluvial","text":"donut chart used parsimoniously","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/bar.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple bar chart — bar","title":"Simple bar chart — bar","text":"Simple bar chart","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/bar.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple bar chart — bar","text":"","code":"bar( df, x, y, group = NULL, flip = TRUE, percent = TRUE, wrap = NULL, position = \"dodge\", alpha = 1, x_title = NULL, y_title = NULL, group_title = NULL, title = NULL, subtitle = NULL, caption = NULL, add_text = FALSE, add_text_suffix = \"\", theme = theme_reach() )"},{"path":"https://gnoblet.github.io/visualizeR/reference/bar.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple bar chart — bar","text":"df data frame. x numeric column. y character column coercible character column. group grouping categorical column, e.g. administrative areas population groups. flip TRUE FALSE. 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Default TRUE horizontal lollipop plot. wrap x-labels wrapped? Number characters. arrange TRUE FALSE. Arrange highest percentage first. point_size Point size. point_color Point color. point_alpha Point alpha. segment_size Segment size. segment_color Segment color. segment_alpha Segment alpha. alpha Fill transparency. x_title x scale title. Default NULL. y_title y scale title. Default NULL. title Plot title. Default NULL. subtitle Plot subtitle. Default NULL. caption Plot caption. Default NULL. add_text TRUE FALSE. Add y value text within bubble. add_text_size Text size. add_text_suffix percent FALSE, add suffix text label? add_text_color Added text color. Default white. add_text_fontface Added text font face. Default \"bold\". theme Whatever theme. 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Default former `TRUE` show_palettes ouput set palettes names pick ? Default `FALSE` ... Additional arguments pass colorRampPalette()","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/pal_impact.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Return function to interpolate an IMPACT color palette — pal_impact","text":"color palette","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/pal_reach.html","id":null,"dir":"Reference","previous_headings":"","what":"Return function to interpolate a REACH color palette — pal_reach","title":"Return function to interpolate a REACH color palette — pal_reach","text":"Return function interpolate REACH color palette","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/pal_reach.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Return function to interpolate a REACH color palette — pal_reach","text":"","code":"pal_reach( palette = \"main\", reverse = FALSE, color_ramp_palette = FALSE, show_palettes = FALSE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/pal_reach.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Return function to interpolate a REACH color palette — pal_reach","text":"palette Character name palette REACH palettes reverse Boolean indicating whether palette reversed color_ramp_palette output `grDevices::colorRampPalette` function vector hex codes? Default former `TRUE` show_palettes ouput set palettes names pick ? Default `FALSE` ... Additional arguments pass colorRampPalette()","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/pal_reach.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Return function to interpolate a REACH color palette — pal_reach","text":"color palette","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/point.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple point chart — point","title":"Simple point chart — point","text":"Simple point chart","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/point.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple point chart — point","text":"","code":"point( df, x, y, group = NULL, flip = TRUE, alpha = 1, size = 1, x_title = NULL, y_title = NULL, group_title = NULL, title = NULL, subtitle = NULL, caption = NULL, theme = theme_reach() )"},{"path":"https://gnoblet.github.io/visualizeR/reference/point.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple point chart — point","text":"df data frame. x numeric column. y character column coercible character column. group grouping categorical column, e.g. administrative areas population groups. flip TRUE FALSE. Default TRUE horizontal bar plot. alpha Fill transparency. size Point size. x_title x scale title. Default NULL. y_title y scale title. Default NULL. group_title group legend title. Default NULL. title Plot title. Default NULL. subtitle Plot subtitle. Default NULL. caption Plot caption. Default NULL. theme Whatever theme. Default theme_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/point.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple point chart — point","text":"bar chart","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_color.html","id":null,"dir":"Reference","previous_headings":"","what":"Color scale constructor for REACH or AGORA colors — scale_color","title":"Color scale constructor for REACH or AGORA colors — scale_color","text":"Color scale constructor REACH AGORA colors","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_color.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Color scale constructor for REACH or AGORA colors — scale_color","text":"","code":"scale_color( initiative = \"reach\", palette = \"main\", discrete = TRUE, reverse = FALSE, reverse_guide = TRUE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_color.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Color scale constructor for REACH or AGORA colors — scale_color","text":"initiative Either \"reach\" \"agora\" \"default\". palette Palette name `pal_reach()` `pal_agora()`. discrete Boolean indicating whether color aesthetic discrete . reverse Boolean indicating whether palette reversed. reverse_guide Boolean indicating whether guide reversed. ... Additional arguments passed discrete_scale() scale_fill_gradient(), used respectively discrete TRUE FALSE.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_color.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Color scale constructor for REACH or AGORA colors — scale_color","text":"color scale ggplot","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":null,"dir":"Reference","previous_headings":"","what":"Fill scale constructor for REACH or AGORA colors — scale_fill","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"Fill scale constructor REACH AGORA colors","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"","code":"scale_fill( initiative = \"reach\", palette = \"main\", discrete = TRUE, reverse = FALSE, reverse_guide = TRUE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"initiative Either \"reach\" \"agora\" \"default\". palette Palette name `pal_reach()` `pal_agora()`. discrete Boolean indicating whether color aesthetic discrete . reverse Boolean indicating whether palette reversed. reverse_guide Boolean indicating whether guide reversed. ... Additional arguments passed discrete_scale() scale_fill_gradient(), used respectively discrete TRUE FALSE.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"fill scale ggplot.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":null,"dir":"Reference","previous_headings":"","what":"Subvec not in — subvec_not_in","title":"Subvec not in — subvec_not_in","text":"Subvec ","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subvec not in — subvec_not_in","text":"","code":"subvec_not_in(vector, set)"},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Subvec not in — subvec_not_in","text":"vector vector subset set set-vector","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Subvec not in — subvec_not_in","text":"subset vector set","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":null,"dir":"Reference","previous_headings":"","what":"ggplot2 theme with REACH color palettes — theme_reach","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"Give reach colors fonts ggplot.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"","code":"theme_reach( initiative = \"reach\", palette = \"main\", discrete = TRUE, reverse = FALSE, font_family = \"Segoe UI\", title_size = 12, title_color = cols_reach(\"main_grey\"), title_font_face = \"bold\", title_hjust = NULL, title_position_to_plot = TRUE, text_size = 10, text_color = cols_reach(\"main_grey\"), text_font_face = \"plain\", panel_background_color = \"#FFFFFF\", panel_border = FALSE, panel_border_color = cols_reach(\"main_grey\"), legend_position = \"right\", legend_direction = \"vertical\", legend_reverse = TRUE, legend_title_size = 11, legend_title_color = cols_reach(\"main_grey\"), legend_title_font_face = \"plain\", legend_text_size = 10, legend_text_color = cols_reach(\"main_grey\"), legend_text_font_face = \"plain\", axis_x = TRUE, axis_y = TRUE, axis_text_size = 10, axis_text_color = cols_reach(\"main_grey\"), axis_text_font_face = \"plain\", axis_title_size = 11, axis_title_color = cols_reach(\"main_grey\"), axis_title_font_face = \"bold\", axis_text_x_angle = 0, axis_text_x_vjust = 0.5, axis_text_x_hjust = 0.5, grid_major_x = FALSE, grid_major_y = FALSE, grid_major_color = cols_reach(\"main_lt_grey\"), grid_major_x_size = 0.1, grid_major_y_size = 0.1, grid_minor_x = FALSE, grid_minor_y = FALSE, grid_minor_color = cols_reach(\"main_lt_grey\"), grid_minor_x_size = 0.05, grid_minor_y_size = 0.05, caption_position_to_plot = TRUE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"initiative Either \"reach\" \"default\". palette Palette name 'pal_reach()'. discrete Boolean indicating whether color aesthetic discrete . reverse Boolean indicating whether palette reversed. font_family font family plot's texts. Default \"Segoe UI\". title_size size legend title. Defaults 11. title_color Legend title color. title_font_face Legend title font face. Default \"plain\". Font face (\"plain\", \"italic\", \"bold\", \"bold.italic\"). title_hjust Title horizontal justification. Default NULL. Use 0.5 center title. title_position_to_plot TRUE FALSE. Positioning plot panel? text_size size text title, subtitle caption. Defaults 10. text_color Text color. text_font_face Text font face. Default \"bold\". Font face (\"plain\", \"italic\", \"bold\", \"bold.italic\"). panel_background_color color panel background color. Default white. panel_border Boolean. Plot panel border? Default FALSE. panel_border_color color. Default REACH main grey. legend_position Position legend; Default \"right\". Can take \"right\", \"left\", \"top\", \"bottom\" \"none\". legend_direction Direction legend. Default \"vertical\". Can take \"vertical\" \"horizontal\". legend_reverse Reverse color guide? Default TRUE. legend_title_size Legend title size. legend_title_color Legend title color. legend_title_font_face Legend title font face. Default \"plain\". Font face (\"plain\", \"italic\", \"bold\", \"bold.italic\"). legend_text_size Legend text size. legend_text_color Legend text color. legend_text_font_face Legend text font face. Default \"plain\". Font face (\"plain\", \"italic\", \"bold\", \"bold.italic\"). axis_x Boolean. need x-axis? axis_y Boolean. need y-axis? axis_text_size Axis text size. axis_text_color Axis text color. axis_text_font_face Axis text font face. Default \"plain\". Font face (\"plain\", \"italic\", \"bold\", \"bold.italic\"). axis_title_size Axis title size. axis_title_color Axis title color. axis_title_font_face Axis title font face. Default \"plain\". Font face (\"plain\", \"italic\", \"bold\", \"bold.italic\"). axis_text_x_angle Angle x-axis text. axis_text_x_vjust Vertical adjustment x-axis text. axis_text_x_hjust Vertical adjustment x-axis text. grid_major_x Boolean. need major grid lines x-axis? grid_major_y Boolean. need major grid lines y-axis? grid_major_color Major grid lines color. grid_major_x_size Major X line size. grid_major_y_size Major Y line size. grid_minor_x Boolean. need minor grid lines x-axis? grid_minor_y Boolean. need minor grid lines y-axis? grid_minor_color Minor grid lines color. grid_minor_x_size Minor X line size. grid_minor_y_size Minor Y line size. caption_position_to_plot TRUE FALSE. Positioning plot panel? ... Additional arguments passed `ggplot2::gg_theme()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"base REACH theme","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/visualizeR-package.html","id":null,"dir":"Reference","previous_headings":"","what":"visualizeR: What a color! What a viz! — visualizeR-package","title":"visualizeR: What a color! What a viz! — visualizeR-package","text":"basically provides colors hex codes, color palettes, viz functions (graphs maps).","code":""},{"path":[]},{"path":"https://gnoblet.github.io/visualizeR/reference/visualizeR-package.html","id":"author","dir":"Reference","previous_headings":"","what":"Author","title":"visualizeR: What a color! What a viz! — visualizeR-package","text":"Maintainer: Noblet Guillaume gnoblet@zaclys.net","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/waffle.html","id":null,"dir":"Reference","previous_headings":"","what":"Simple waffle chart — waffle","title":"Simple waffle chart — waffle","text":"Simple waffle chart","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/waffle.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Simple waffle chart — waffle","text":"","code":"waffle( df, x, y, n_rows = 10, size = 2, x_title = NULL, x_lab = NULL, title = NULL, subtitle = NULL, caption = NULL, arrange = TRUE, theme = theme_reach(axis_x = FALSE, axis_y = FALSE, legend_position = \"bottom\", legend_direction = \"horizontal\", title_hjust = 0.5) )"},{"path":"https://gnoblet.github.io/visualizeR/reference/waffle.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Simple waffle chart — waffle","text":"df data frame. x character column coercible character column. give waffle's fill color. y numeric column (plotting proportion, make sure percentages 0 100 0 1). n_rows Number rows. Default 10. size Width separator blocks (defaults 2). x_title x scale title. Default NULL. x_lab x scale caption. Default NULL. title Plot title. Default NULL. subtitle Plot subtitle. Default NULL. caption Plot caption. Default NULL. arrange TRUE FALSE. Arrange highest percentage first. theme Whatever theme. Default theme_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/waffle.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Simple waffle chart — waffle","text":"waffle chart","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-089000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.8.9000","title":"visualizeR 0.8.9000","text":"Add waffle(). Add pal_default() function fallback scale functions initiative theme_reach(). uses viridis::magma(). Update AGORA palettes. small bug fixes.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-079000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.7.9000","title":"visualizeR 0.7.9000","text":"Add dumbbell(). Add alluvial() Add donut() Add lollipop() Add parameters theme_reach(), including grid lines args.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-069000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.6.9000","title":"visualizeR 0.6.9000","text":"Add dumbbell(). Add parameters theme_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-059000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.5.9000","title":"visualizeR 0.5.9000","text":"Add wrapping title, subtitle caption thanks ggtext Add wrapping labels bar() x-discrete scale. Add parameters theme_reach()","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-049000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.4.9000","title":"visualizeR 0.4.9000","text":"Breaking changes: remove dependency ggblanket. Full rewrite theme_reach(). bar_reach now bar() theming passed argument theme default theme_reach(). point_reach now point() theming passed argument theme default theme_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-039000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.3.9000","title":"visualizeR 0.3.9000","text":"Breaking changes: update ggblanket v1.6.1. Add plotting functions indicator maps.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-029000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.2.9000","title":"visualizeR 0.2.9000","text":"Breaking changes: almost functions got refinements, new functions, typically hbar() becomes bar_reach() point_reach() added. Following theme_reach() now used plotting functions. Add README.md.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0179000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.7.9000","title":"visualizeR 0.1.7.9000","text":"Fixed color palettes.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0169000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.6.9000","title":"visualizeR 0.1.6.9000","text":"IMPACT colors palettes added: function cols_impact() pal_impact(). Color palettes REACH added (2 7 continuous palettes) ; see updated cols_reach() pal_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0159000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.5.9000","title":"visualizeR 0.1.5.9000","text":"Move simplevis successor ggblanket.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0149000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.4.9000","title":"visualizeR 0.1.4.9000","text":"hbar() gains new boolean argument reverse pass pal_reach() pal_agora(), indicating color palette reversed .","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0139000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.3.9000","title":"visualizeR 0.1.3.9000","text":"Small change hbar(): removes error arg within simplevis::gg_hbar() call.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0129000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.2.9000","title":"visualizeR 0.1.2.9000","text":"duplicate scale_color() function, now scale_fill()","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0119000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.1.9000","title":"visualizeR 0.1.1.9000","text":"Added two horizontal bar functions: hbar(), hbar_percent() (#3) Added internals check missing columns bad arguments (#3) Modified theme_reach() documentation Add buffer_bbox() function produce buffered bbox, e.g. use tmap","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-010","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.0","title":"visualizeR 0.1.0","text":"Added NEWS.md file track changes package Initiate repo","code":""}] +[{"path":"https://gnoblet.github.io/visualizeR/authors.html","id":null,"dir":"","previous_headings":"","what":"Authors","title":"Authors and Citation","text":"Noblet Guillaume. Author, maintainer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/authors.html","id":"citation","dir":"","previous_headings":"","what":"Citation","title":"Authors and Citation","text":"Guillaume N (2022). visualizeR: color! viz!. https://github.com/gnoblet/visualizeR, https://gnoblet.github.io/visualizeR/.","code":"@Manual{, title = {visualizeR: What a color! What a viz!}, author = {Noblet Guillaume}, year = {2022}, note = {https://github.com/gnoblet/visualizeR, https://gnoblet.github.io/visualizeR/}, }"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"visualizer-","dir":"","previous_headings":"","what":"What a color! What a viz!","title":"What a color! What a viz!","text":"color! viz! visualizeR proposes utils get REACH AGORA colors, ready--go color palettes, visualization functions (horizontal hist graph instance).","code":""},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"installation","dir":"","previous_headings":"","what":"Installation","title":"What a color! What a viz!","text":"can install last version visualizeR GitHub :","code":"# install.packages(\"devtools\") devtools::install_github(\"gnoblet/visualizeR\", build_vignettes = TRUE)"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"roadmap","dir":"","previous_headings":"","what":"Roadmap","title":"What a color! What a viz!","text":"Roadmap follows: Add IMPACT’s colors Add color palettes internal documentation remains added --7-color palettes black color palettes Add new types visualization (e.g. dumbbell plot) Use examples Add ease-map functions Add interactive functions (maps graphs)","code":""},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"request","dir":"","previous_headings":"","what":"Request","title":"What a color! What a viz!","text":"Please, hesitate pull request new viz colors color palettes, email request change (guillaume.noblet@reach-initiative.org gnoblet@zaclys.net).","code":""},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"colors","dir":"","previous_headings":"","what":"Colors","title":"What a color! What a viz!","text":"Color palettes REACH, AGORA IMPACT available. Functions access colors palettes cols_initiative() pal_initiative(). now, initiative colors color palettes REACH. Feel free pull requests new AGORA IMPACT colors.","code":"library(visualizeR) # Get all saved REACH colors, named cols_reach(unnamed = F)[1:10] #> white black main_grey main_red main_lt_grey main_beige #> \"#FFFFFF\" \"#000000\" \"#58585A\" \"#EE5859\" \"#C7C8CA\" \"#D2CBB8\" #> iroise_1 iroise_2 iroise_3 iroise_4 #> \"#DFECEF\" \"#B1D7E0\" \"#699DA3\" \"#236A7A\" # Extract a color palette as hexadecimal codes and reversed pal_reach(palette = \"main\", reversed = TRUE, color_ramp_palette = FALSE) #> [1] \"#58585A\" \"#EE5859\" \"#C7C8CA\" \"#D2CBB8\" # Get all color palettes names pal_reach(show_palettes = T) #> [1] \"main\" \"primary\" \"secondary\" \"two_dots\" #> [5] \"two_dots_flashy\" \"red_main\" \"red_main_5\" \"red_alt\" #> [9] \"red_alt_5\" \"iroise\" \"iroise_5\" \"discrete_6\" #> [13] \"red_2\" \"red_3\" \"red_4\" \"red_5\" #> [17] \"red_6\" \"red_7\" \"green_2\" \"green_3\" #> [21] \"green_4\" \"green_5\" \"green_6\" \"green_7\" #> [25] \"artichoke_2\" \"artichoke_3\" \"artichoke_4\" \"artichoke_5\" #> [29] \"artichoke_6\" \"artichoke_7\" \"blue_2\" \"blue_3\" #> [33] \"blue_4\" \"blue_5\" \"blue_6\" \"blue_7\""},{"path":[]},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-1-bar-chart-already-reach-themed","dir":"","previous_headings":"Charts","what":"Example 1: Bar chart, already REACH themed","title":"What a color! What a viz!","text":"","code":"library(visualizeR) library(palmerpenguins) library(dplyr) df <- penguins |> group_by(island, species) |> summarize( mean_bl = mean(bill_length_mm, na.rm = T), mean_fl = mean(flipper_length_mm, na.rm = T)) |> ungroup() # Simple bar chart by group bar_reach(df, mean_bl, island, species, percent = FALSE, x_title = \"Mean of bill length\") # Using another color palette bar_reach(df, mean_bl, island, species, percent = FALSE, palette = \"artichoke_3\", legend_rev = TRUE)"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"example-2-point-chart-already-reach-themed","dir":"","previous_headings":"Charts","what":"Example 2: Point chart, already REACH themed","title":"What a color! What a viz!","text":"stage, point_reach() supports categorical grouping colors group arg.","code":"# Simple point chart point_reach(penguins, bill_length_mm, flipper_length_mm) # Point chart with grouping colors, greater dot size, some transparency, reversed color palette point_reach(penguins, bill_length_mm, flipper_length_mm, island, alpha = 0.6, size = 3, reverse = TRUE) # Using another color palettes point_reach(penguins, bill_length_mm, flipper_length_mm, island, palette = \"artichoke_3\")"},{"path":"https://gnoblet.github.io/visualizeR/index.html","id":"maps","dir":"","previous_headings":"","what":"Maps","title":"What a color! What a viz!","text":"exported tmap::tmap_save().","code":"# Add indicator layer # - based on \"pretty\" classes and title \"Proportion (%)\" # - buffer to add a 10% around the bounding box map <- add_indicator_layer( indicator_admin1, opn_dfc, buffer = 0.1) + # Layout - some defaults - add the map title add_layout(\"% of HH that reported open defecation as sanitation facility\") + # Admin boundaries as list of shape files (lines) and colors, line widths and labels as vectors add_admin_boundaries( lines = list(line_admin1, border_admin0, frontier_admin0), colors = cols_reach(\"main_lt_grey\", \"dk_grey\", \"black\"), lwds = c(0.5, 2, 3), labels = c(\"Department\", \"Country\", \"Dominican Rep. frontier\"), title = \"Administrative boundaries\") + # Add text labels - centered on admin 1 centroids add_admin_labels(centroid_admin1, ADM1_FR_UPPER) + # Add a compass add_compass() + # Add a scale bar add_scale_bar() + # Add credits add_credits(\"Admin. boundaries. : CNIGS \\nCoord. system: GCS WGS 1984\")"},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":null,"dir":"","previous_headings":"","what":"GNU General Public License","title":"GNU General Public License","text":"Version 3, 29 June 2007Copyright © 2007 Free Software Foundation, Inc.  Everyone permitted copy distribute verbatim copies license document, changing allowed.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"preamble","dir":"","previous_headings":"","what":"Preamble","title":"GNU General Public License","text":"GNU General Public License free, copyleft license software kinds works. licenses software practical works designed take away freedom share change works. contrast, GNU General Public License intended guarantee freedom share change versions program–make sure remains free software users. , Free Software Foundation, use GNU General Public License software; applies also work released way authors. can apply programs, . speak free software, referring freedom, price. General Public Licenses designed make sure freedom distribute copies free software (charge wish), receive source code can get want , can change software use pieces new free programs, know can things. protect rights, need prevent others denying rights asking surrender rights. Therefore, certain responsibilities distribute copies software, modify : responsibilities respect freedom others. example, distribute copies program, whether gratis fee, must pass recipients freedoms received. must make sure , , receive can get source code. must show terms know rights. Developers use GNU GPL protect rights two steps: (1) assert copyright software, (2) offer License giving legal permission copy, distribute /modify . developers’ authors’ protection, GPL clearly explains warranty free software. users’ authors’ sake, GPL requires modified versions marked changed, problems attributed erroneously authors previous versions. devices designed deny users access install run modified versions software inside , although manufacturer can . fundamentally incompatible aim protecting users’ freedom change software. systematic pattern abuse occurs area products individuals use, precisely unacceptable. Therefore, designed version GPL prohibit practice products. problems arise substantially domains, stand ready extend provision domains future versions GPL, needed protect freedom users. Finally, every program threatened constantly software patents. States allow patents restrict development use software general-purpose computers, , wish avoid special danger patents applied free program make effectively proprietary. prevent , GPL assures patents used render program non-free. precise terms conditions copying, distribution modification follow.","code":""},{"path":[]},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_0-definitions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"0. Definitions","title":"GNU General Public License","text":"“License” refers version 3 GNU General Public License. “Copyright” also means copyright-like laws apply kinds works, semiconductor masks. “Program” refers copyrightable work licensed License. licensee addressed “”. “Licensees” “recipients” may individuals organizations. “modify” work means copy adapt part work fashion requiring copyright permission, making exact copy. resulting work called “modified version” earlier work work “based ” earlier work. “covered work” means either unmodified Program work based Program. “propagate” work means anything , without permission, make directly secondarily liable infringement applicable copyright law, except executing computer modifying private copy. Propagation includes copying, distribution (without modification), making available public, countries activities well. “convey” work means kind propagation enables parties make receive copies. 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Source Code","title":"GNU General Public License","text":"“source code” work means preferred form work making modifications . “Object code” means non-source form work. “Standard Interface” means interface either official standard defined recognized standards body, , case interfaces specified particular programming language, one widely used among developers working language. “System Libraries” executable work include anything, work whole, () included normal form packaging Major Component, part Major Component, (b) serves enable use work Major Component, implement Standard Interface implementation available public source code form. “Major Component”, context, means major essential component (kernel, window system, ) specific operating system () executable work runs, compiler used produce work, object code interpreter used run . “Corresponding Source” work object code form means source code needed generate, install, (executable work) run object code modify work, including scripts control activities. 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License explicitly affirms unlimited permission run unmodified Program. output running covered work covered License output, given content, constitutes covered work. License acknowledges rights fair use equivalent, provided copyright law. may make, run propagate covered works convey, without conditions long license otherwise remains force. may convey covered works others sole purpose make modifications exclusively , provide facilities running works, provided comply terms License conveying material control copyright. thus making running covered works must exclusively behalf, direction control, terms prohibit making copies copyrighted material outside relationship . Conveying circumstances permitted solely conditions stated . Sublicensing allowed; section 10 makes unnecessary.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_3-protecting-users-legal-rights-from-anti-circumvention-law","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"3. Protecting Users’ Legal Rights From Anti-Circumvention Law","title":"GNU General Public License","text":"covered work shall deemed part effective technological measure applicable law fulfilling obligations article 11 WIPO copyright treaty adopted 20 December 1996, similar laws prohibiting restricting circumvention measures. convey covered work, waive legal power forbid circumvention technological measures extent circumvention effected exercising rights License respect covered work, disclaim intention limit operation modification work means enforcing, work’s users, third parties’ legal rights forbid circumvention technological measures.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_4-conveying-verbatim-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"4. Conveying Verbatim Copies","title":"GNU General Public License","text":"may convey verbatim copies Program’s source code receive , medium, provided conspicuously appropriately publish copy appropriate copyright notice; keep intact notices stating License non-permissive terms added accord section 7 apply code; keep intact notices absence warranty; give recipients copy License along Program. may charge price price copy convey, may offer support warranty protection fee.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_5-conveying-modified-source-versions","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"5. Conveying Modified Source Versions","title":"GNU General Public License","text":"may convey work based Program, modifications produce Program, form source code terms section 4, provided also meet conditions: ) work must carry prominent notices stating modified , giving relevant date. b) work must carry prominent notices stating released License conditions added section 7. requirement modifies requirement section 4 “keep intact notices”. c) must license entire work, whole, License anyone comes possession copy. License therefore apply, along applicable section 7 additional terms, whole work, parts, regardless packaged. 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Conveying Non-Source Forms","title":"GNU General Public License","text":"may convey covered work object code form terms sections 4 5, provided also convey machine-readable Corresponding Source terms License, one ways: ) Convey object code , embodied , physical product (including physical distribution medium), accompanied Corresponding Source fixed durable physical medium customarily used software interchange. b) Convey object code , embodied , physical product (including physical distribution medium), accompanied written offer, valid least three years valid long offer spare parts customer support product model, give anyone possesses object code either (1) copy Corresponding Source software product covered License, durable physical medium customarily used software interchange, price reasonable cost physically performing conveying source, (2) access copy Corresponding Source network server charge. c) Convey individual copies object code copy written offer provide Corresponding Source. alternative allowed occasionally noncommercially, received object code offer, accord subsection 6b. d) Convey object code offering access designated place (gratis charge), offer equivalent access Corresponding Source way place charge. need require recipients copy Corresponding Source along object code. place copy object code network server, Corresponding Source may different server (operated third party) supports equivalent copying facilities, provided maintain clear directions next object code saying find Corresponding Source. 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Access network may denied modification materially adversely affects operation network violates rules protocols communication across network. Corresponding Source conveyed, Installation Information provided, accord section must format publicly documented (implementation available public source code form), must require special password key unpacking, reading copying.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_7-additional-terms","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"7. Additional Terms","title":"GNU General Public License","text":"“Additional permissions” terms supplement terms License making exceptions one conditions. 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Termination","title":"GNU General Public License","text":"may propagate modify covered work except expressly provided License. attempt otherwise propagate modify void, automatically terminate rights License (including patent licenses granted third paragraph section 11). However, cease violation License, license particular copyright holder reinstated () provisionally, unless copyright holder explicitly finally terminates license, (b) permanently, copyright holder fails notify violation reasonable means prior 60 days cessation. Moreover, license particular copyright holder reinstated permanently copyright holder notifies violation reasonable means, first time received notice violation License (work) copyright holder, cure violation prior 30 days receipt notice. Termination rights section terminate licenses parties received copies rights License. rights terminated permanently reinstated, qualify receive new licenses material section 10.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_9-acceptance-not-required-for-having-copies","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"9. Acceptance Not Required for Having Copies","title":"GNU General Public License","text":"required accept License order receive run copy Program. Ancillary propagation covered work occurring solely consequence using peer--peer transmission receive copy likewise require acceptance. However, nothing License grants permission propagate modify covered work. actions infringe copyright accept License. Therefore, modifying propagating covered work, indicate acceptance License .","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_10-automatic-licensing-of-downstream-recipients","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"10. Automatic Licensing of Downstream Recipients","title":"GNU General Public License","text":"time convey covered work, recipient automatically receives license original licensors, run, modify propagate work, subject License. responsible enforcing compliance third parties License. “entity transaction” transaction transferring control organization, substantially assets one, subdividing organization, merging organizations. propagation covered work results entity transaction, party transaction receives copy work also receives whatever licenses work party’s predecessor interest give previous paragraph, plus right possession Corresponding Source work predecessor interest, predecessor can get reasonable efforts. may impose restrictions exercise rights granted affirmed License. example, may impose license fee, royalty, charge exercise rights granted License, may initiate litigation (including cross-claim counterclaim lawsuit) alleging patent claim infringed making, using, selling, offering sale, importing Program portion .","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_11-patents","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"11. Patents","title":"GNU General Public License","text":"“contributor” copyright holder authorizes use License Program work Program based. work thus licensed called contributor’s “contributor version”. contributor’s “essential patent claims” patent claims owned controlled contributor, whether already acquired hereafter acquired, infringed manner, permitted License, making, using, selling contributor version, include claims infringed consequence modification contributor version. purposes definition, “control” includes right grant patent sublicenses manner consistent requirements License. contributor grants non-exclusive, worldwide, royalty-free patent license contributor’s essential patent claims, make, use, sell, offer sale, import otherwise run, modify propagate contents contributor version. following three paragraphs, “patent license” express agreement commitment, however denominated, enforce patent (express permission practice patent covenant sue patent infringement). “grant” patent license party means make agreement commitment enforce patent party. convey covered work, knowingly relying patent license, Corresponding Source work available anyone copy, free charge terms License, publicly available network server readily accessible means, must either (1) cause Corresponding Source available, (2) arrange deprive benefit patent license particular work, (3) arrange, manner consistent requirements License, extend patent license downstream recipients. “Knowingly relying” means actual knowledge , patent license, conveying covered work country, recipient’s use covered work country, infringe one identifiable patents country reason believe valid. , pursuant connection single transaction arrangement, convey, propagate procuring conveyance , covered work, grant patent license parties receiving covered work authorizing use, propagate, modify convey specific copy covered work, patent license grant automatically extended recipients covered work works based . patent license “discriminatory” include within scope coverage, prohibits exercise , conditioned non-exercise one rights specifically granted License. may convey covered work party arrangement third party business distributing software, make payment third party based extent activity conveying work, third party grants, parties receive covered work , discriminatory patent license () connection copies covered work conveyed (copies made copies), (b) primarily connection specific products compilations contain covered work, unless entered arrangement, patent license granted, prior 28 March 2007. Nothing License shall construed excluding limiting implied license defenses infringement may otherwise available applicable patent law.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_12-no-surrender-of-others-freedom","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"12. No Surrender of Others’ Freedom","title":"GNU General Public License","text":"conditions imposed (whether court order, agreement otherwise) contradict conditions License, excuse conditions License. convey covered work satisfy simultaneously obligations License pertinent obligations, consequence may convey . example, agree terms obligate collect royalty conveying convey Program, way satisfy terms License refrain entirely conveying Program.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_13-use-with-the-gnu-affero-general-public-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"13. Use with the GNU Affero General Public License","title":"GNU General Public License","text":"Notwithstanding provision License, permission link combine covered work work licensed version 3 GNU Affero General Public License single combined work, convey resulting work. terms License continue apply part covered work, special requirements GNU Affero General Public License, section 13, concerning interaction network apply combination .","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_14-revised-versions-of-this-license","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"14. Revised Versions of this License","title":"GNU General Public License","text":"Free Software Foundation may publish revised /new versions GNU General Public License time time. new versions similar spirit present version, may differ detail address new problems concerns. version given distinguishing version number. Program specifies certain numbered version GNU General Public License “later version” applies , option following terms conditions either numbered version later version published Free Software Foundation. Program specify version number GNU General Public License, may choose version ever published Free Software Foundation. Program specifies proxy can decide future versions GNU General Public License can used, proxy’s public statement acceptance version permanently authorizes choose version Program. Later license versions may give additional different permissions. However, additional obligations imposed author copyright holder result choosing follow later version.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_15-disclaimer-of-warranty","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"15. Disclaimer of Warranty","title":"GNU General Public License","text":"WARRANTY PROGRAM, EXTENT PERMITTED APPLICABLE LAW. EXCEPT OTHERWISE STATED WRITING COPYRIGHT HOLDERS /PARTIES PROVIDE PROGRAM “” WITHOUT WARRANTY KIND, EITHER EXPRESSED IMPLIED, INCLUDING, LIMITED , IMPLIED WARRANTIES MERCHANTABILITY FITNESS PARTICULAR PURPOSE. ENTIRE RISK QUALITY PERFORMANCE PROGRAM . PROGRAM PROVE DEFECTIVE, ASSUME COST NECESSARY SERVICING, REPAIR CORRECTION.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_16-limitation-of-liability","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"16. Limitation of Liability","title":"GNU General Public License","text":"EVENT UNLESS REQUIRED APPLICABLE LAW AGREED WRITING COPYRIGHT HOLDER, PARTY MODIFIES /CONVEYS PROGRAM PERMITTED , LIABLE DAMAGES, INCLUDING GENERAL, SPECIAL, INCIDENTAL CONSEQUENTIAL DAMAGES ARISING USE INABILITY USE PROGRAM (INCLUDING LIMITED LOSS DATA DATA RENDERED INACCURATE LOSSES SUSTAINED THIRD PARTIES FAILURE PROGRAM OPERATE PROGRAMS), EVEN HOLDER PARTY ADVISED POSSIBILITY DAMAGES.","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"id_17-interpretation-of-sections-15-and-16","dir":"","previous_headings":"TERMS AND CONDITIONS","what":"17. Interpretation of Sections 15 and 16","title":"GNU General Public License","text":"disclaimer warranty limitation liability provided given local legal effect according terms, reviewing courts shall apply local law closely approximates absolute waiver civil liability connection Program, unless warranty assumption liability accompanies copy Program return fee. END TERMS CONDITIONS","code":""},{"path":"https://gnoblet.github.io/visualizeR/LICENSE.html","id":"how-to-apply-these-terms-to-your-new-programs","dir":"","previous_headings":"","what":"How to Apply These Terms to Your New Programs","title":"GNU General Public License","text":"develop new program, want greatest possible use public, best way achieve make free software everyone can redistribute change terms. , attach following notices program. safest attach start source file effectively state exclusion warranty; file least “copyright” line pointer full notice found. Also add information contact electronic paper mail. program terminal interaction, make output short notice like starts interactive mode: hypothetical commands show w show c show appropriate parts General Public License. course, program’s commands might different; GUI interface, use “box”. also get employer (work programmer) school, , sign “copyright disclaimer” program, necessary. information , apply follow GNU GPL, see . GNU General Public License permit incorporating program proprietary programs. program subroutine library, may consider useful permit linking proprietary applications library. want , use GNU Lesser General Public License instead License. first, please read .","code":" Copyright (C) This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. You should have received a copy of the GNU General Public License along with this program. If not, see . Copyright (C) This program comes with ABSOLUTELY NO WARRANTY; for details type 'show w'. This is free software, and you are welcome to redistribute it under certain conditions; type 'show c' for details."},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":null,"dir":"Reference","previous_headings":"","what":"Abord bad argument — abort_bad_argument","title":"Abord bad argument — abort_bad_argument","text":"Abord bad argument","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Abord bad argument — abort_bad_argument","text":"","code":"abort_bad_argument(arg, must, not = NULL)"},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Abord bad argument — abort_bad_argument","text":"arg argument must arg must Optional. arg must .","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/abort_bad_argument.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Abord bad argument — abort_bad_argument","text":"stop statement","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":null,"dir":"Reference","previous_headings":"","what":"Add admin boundaries (lines) and the legend — add_admin_boundaries","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"Add admin boundaries (lines) legend","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"","code":"add_admin_boundaries( lines, colors, labels, lwds, title = \"\", buffer = NULL, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"lines List multiline shape defined sf package. colors Vector hexadecimal codes. order lines. labels Vector labels legend. order lines. lwds Vector line widths. order lines. title Legend title. buffer buffer, either one value vector 4 values (left, bottom, right, top). ... arguments pass shape `tmap::tm_lines()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_boundaries.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add admin boundaries (lines) and the legend — add_admin_boundaries","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"Wrapper around `tmap::tm_text()` sane defaults plotting admin labels.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"","code":"add_admin_labels( point, text, size = 0.5, fontface = \"bold\", fontfamily = \"Leelawadee\", shadow = TRUE, auto_placement = FALSE, remove_overlap = FALSE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"point Multipoint shape defined sf package. text Text labels column. size Relative size text labels. fontface Fontface. fontfamily Fontfamily. Leelawadee precious. shadow Boolean. Add shadow around text labels. Issue opened Github request. auto_placement Logical determines whether labels placed automatically. remove_overlap Logical determines whether overlapping labels removed. ... arguments pass `tmap::tm_text()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_admin_labels.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. — add_admin_labels","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":null,"dir":"Reference","previous_headings":"","what":"Add a compass — add_compass","title":"Add a compass — add_compass","text":"Add compass","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Add a compass — add_compass","text":"","code":"add_compass( text_size = 0.6, position = c(\"right\", 0.8), color_dark = cols_reach(\"black\"), text_color = cols_reach(\"black\"), type = \"4star\", ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Add a compass — add_compass","text":"text_size Relative font size. position Position compass. Vector two values, specifying x y coordinates. color_dark Color dark parts compass. text_color color text. type Compass type, one : \"arrow\", \"4star\", \"8star\", \"radar\", \"rose\". ... arguments pass `tmap::tm_compass()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_compass.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Add a compass — add_compass","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":null,"dir":"Reference","previous_headings":"","what":"Do you want to credit someone or some institution? — add_credits","title":"Do you want to credit someone or some institution? — add_credits","text":"want credit someone institution?","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Do you want to credit someone or some institution? — add_credits","text":"","code":"add_credits(text, size = 0.4, bg_color = NA, position = c(0.75, 0.02), ...)"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Do you want to credit someone or some institution? — add_credits","text":"text Text. size Relative text size. bg_color Background color. position Position. Vector two coordinates. Usually somewhere . ... arguments pass `tmap::tm_credits()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_credits.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Do you want to credit someone or some institution? — add_credits","text":"tmap layer.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":null,"dir":"Reference","previous_headings":"","what":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"Wrapper around `tmap::tm_polygons()` sane defaults plotting indicator values","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"","code":"add_indicator_layer( poly, col, buffer = NULL, n = 5, style = \"pretty\", palette = pal_reach(\"red_5\"), as_count = TRUE, color_na = cols_reach(\"white\"), text_na = \"Missing data\", legend_title = \"Proportion (%)\", legend_text_separator = \" - \", border_alpha = 1, border_col = cols_reach(\"lt_grey_1\"), lwd = 1, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/add_indicator_layer.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values — add_indicator_layer","text":"poly Multipolygon shape defined sf package. col Numeric attribute map. buffer buffer, either one value vector 4 values (left, bottom, right, top). n desire number classes. style Method process color scale continuous numerical variables. See `classInt::classIntervals()` details. palette Vector fill colors hexadecimal values. REACH color palettes, possible use `pal_reach()`. now,'palette' must changed manually, accordingly number drawn classes. as_count Boolean. col numeric variable, processed count variable? instance, 0, 1-10, 11-20. color_na Fill color missing data. text_na Legend text missing data. legend_title Legend title. legend_text_separator Text separator classes. 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Legend frame? legend_frame Legend frame color. legend_text_size Legend text size 'pt'. legend_title_size Legend title size 'pt'. title_size Title text size 'pt'. title_fontface Title fontface. Bold wanna exemplify lot . title_color Title font color. fontfamily Overall fontfamily. 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Default \"Leelawadee\". alpha Transparency. size Dot size. Default 1.5. x_title x scale title. Default NULL. y_title y scale title. Default NULL. group_title group legend title. Default NULL. title Plot title. Default NULL. subtitle Plot subtitle. Default NULL. caption Caption title string. Default NULL. text_size size text title, subtitle caption. Defaults 10. title_size size title text. Defaults 14. legend_position Position legend; Default \"right\". 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Additional arguments passed discrete_scale() scale_fill_gradient(), used respectively discrete TRUE FALSE.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_color.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Color scale constructor for REACH or AGORA colors — scale_color","text":"color scale ggplot","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":null,"dir":"Reference","previous_headings":"","what":"Fill scale constructor for REACH or AGORA colors — scale_fill","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"Fill scale constructor REACH AGORA colors","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"","code":"scale_fill( initiative = \"reach\", palette = \"main\", discrete = TRUE, reverse = FALSE, reverse_guide = TRUE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"initiative Either \"reach\" \"agora. palette Palette name `pal_reach()` `pal_agora()`. discrete Boolean indicating whether color aesthetic discrete . reverse Boolean indicating whether palette reversed. reverse_guide Boolean indicating whether guide reversed. ... Additional arguments passed discrete_scale() scale_fill_gradient(), used respectively discrete TRUE FALSE.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/scale_fill.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Fill scale constructor for REACH or AGORA colors — scale_fill","text":"fill scale ggplot.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":null,"dir":"Reference","previous_headings":"","what":"Subvec not in — subvec_not_in","title":"Subvec not in — subvec_not_in","text":"Subvec ","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"Subvec not in — subvec_not_in","text":"","code":"subvec_not_in(vector, set)"},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"Subvec not in — subvec_not_in","text":"vector vector subset set set-vector","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/subvec_not_in.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"Subvec not in — subvec_not_in","text":"subset vector set","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":null,"dir":"Reference","previous_headings":"","what":"ggplot2 theme with REACH color palettes — theme_reach","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"Give reach colors fonts ggplot.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":"ref-usage","dir":"Reference","previous_headings":"","what":"Usage","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"","code":"theme_reach( palette = \"main\", discrete = TRUE, reverse = FALSE, family = \"Leelawadee\", text_size = 10, title_size = 14, plot_background_pal = \"#FFFFFF\", panel_background_pal = \"#FFFFFF\", legend_position = \"right\", legend_direction = \"vertical\", legend_reverse = TRUE, ... )"},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":"arguments","dir":"Reference","previous_headings":"","what":"Arguments","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"palette Palette name 'pal_reach()'. discrete Boolean indicating whether color aesthetic discrete . reverse Boolean indicating whether palette reversed. family font family plot's texts. Default \"Leelawadee\". text_size size text title, subtitle caption. Defaults 10. title_size size title text_family. Defaults 14. plot_background_pal color plot background color. Default white. panel_background_pal color panel background color. Default white. legend_position Position legend; Default \"right\". Can take \"right\", \"left\", \"top\", \"bottom\" \"none\". legend_direction Direction legend. Default \"vertical\". Can take \"vertical\" \"horizontal\". legend_reverse Reverse color guide? Default TRUE. ... Additional arguments passed `ggblanket::gg_theme()`.","code":""},{"path":"https://gnoblet.github.io/visualizeR/reference/theme_reach.html","id":"value","dir":"Reference","previous_headings":"","what":"Value","title":"ggplot2 theme with REACH color palettes — theme_reach","text":"base REACH theme","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-039000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.3.9000","title":"visualizeR 0.3.9000","text":"Breaking changes: update ggblanket v1.6.1. Add plotting functions indicator maps.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-029000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.2.9000","title":"visualizeR 0.2.9000","text":"Breaking changes: almost functions got refinements, new functions, typically hbar() becomes bar_reach() point_reach() added. Following theme_reach() now used plotting functions. Add README.md.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0179000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.7.9000","title":"visualizeR 0.1.7.9000","text":"Fixed color palettes.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0169000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.6.9000","title":"visualizeR 0.1.6.9000","text":"IMPACT colors palettes added: function cols_impact() pal_impact(). Color palettes REACH added (2 7 continuous palettes) ; see updated cols_reach() pal_reach().","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0159000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.5.9000","title":"visualizeR 0.1.5.9000","text":"Move simplevis successor ggblanket.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0149000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.4.9000","title":"visualizeR 0.1.4.9000","text":"hbar() gains new boolean argument reverse pass pal_reach() pal_agora(), indicating color palette reversed .","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0139000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.3.9000","title":"visualizeR 0.1.3.9000","text":"Small change hbar(): removes error arg within simplevis::gg_hbar() call.","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0129000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.2.9000","title":"visualizeR 0.1.2.9000","text":"duplicate scale_color() function, now scale_fill()","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-0119000","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.1.9000","title":"visualizeR 0.1.1.9000","text":"Added two horizontal bar functions: hbar(), hbar_percent() (#3) Added internals check missing columns bad arguments (#3) Modified theme_reach() documentation Add buffer_bbox() function produce buffered bbox, e.g. use tmap","code":""},{"path":"https://gnoblet.github.io/visualizeR/news/index.html","id":"visualizer-010","dir":"Changelog","previous_headings":"","what":"visualizeR 0.1.0","title":"visualizeR 0.1.0","text":"Added NEWS.md file track changes package Initiate repo","code":""}] diff --git a/docs/sitemap.xml b/docs/sitemap.xml index ac2d357..c30bba8 100644 --- a/docs/sitemap.xml +++ b/docs/sitemap.xml @@ -3,15 +3,15 @@ https://gnoblet.github.io/visualizeR/404.html - - https://gnoblet.github.io/visualizeR/LICENSE.html - https://gnoblet.github.io/visualizeR/authors.html https://gnoblet.github.io/visualizeR/index.html + + https://gnoblet.github.io/visualizeR/LICENSE.html + https://gnoblet.github.io/visualizeR/news/index.html @@ -40,10 +40,7 @@ https://gnoblet.github.io/visualizeR/reference/add_scale_bar.html - https://gnoblet.github.io/visualizeR/reference/alluvial.html - - - https://gnoblet.github.io/visualizeR/reference/bar.html + https://gnoblet.github.io/visualizeR/reference/bar_reach.html https://gnoblet.github.io/visualizeR/reference/border_admin0.html @@ -63,12 +60,6 @@ https://gnoblet.github.io/visualizeR/reference/cols_reach.html - - https://gnoblet.github.io/visualizeR/reference/donut.html - - - https://gnoblet.github.io/visualizeR/reference/dumbbell.html - https://gnoblet.github.io/visualizeR/reference/frontier_admin0.html @@ -87,15 +78,9 @@ https://gnoblet.github.io/visualizeR/reference/line_admin1.html - - https://gnoblet.github.io/visualizeR/reference/lollipop.html - https://gnoblet.github.io/visualizeR/reference/pal_agora.html - - https://gnoblet.github.io/visualizeR/reference/pal_fallback.html - https://gnoblet.github.io/visualizeR/reference/pal_impact.html @@ -103,7 +88,7 @@ https://gnoblet.github.io/visualizeR/reference/pal_reach.html - https://gnoblet.github.io/visualizeR/reference/point.html + https://gnoblet.github.io/visualizeR/reference/point_reach.html https://gnoblet.github.io/visualizeR/reference/scale_color.html @@ -117,10 +102,4 @@ https://gnoblet.github.io/visualizeR/reference/theme_reach.html - - https://gnoblet.github.io/visualizeR/reference/visualizeR-package.html - - - https://gnoblet.github.io/visualizeR/reference/waffle.html - diff --git a/inst/WORDLIST b/inst/WORDLIST deleted file mode 100644 index 92f2c71..0000000 --- a/inst/WORDLIST +++ /dev/null @@ -1,57 +0,0 @@ -aut -Carlito -CMD -codecov -Codecov -coercible -Config -covr -cre -css -Customizable -donut -Donut -dplyr -Dumbell -forcats -ggalluvial -ggplot -ggrepel -ggtext -github -gnoblet -gpplot -grDevices -grey -Guillaume -hbar -hlollipop -horizonal -https -IDP -io -knitr -LazyData -Noblet -pre -README -rio -rlang -rmarkdown -Roadmap -Roboto -roxygen -RoxygenNote -Segoe -stringr -testthat -theming -tidyr -UI -vdiffr -VignetteBuilder -viridis -viridisLite -visualizeR -withr -zaclys diff --git a/man/abort_bad_argument.Rd b/man/abort_bad_argument.Rd new file mode 100644 index 0000000..02ec558 --- /dev/null +++ b/man/abort_bad_argument.Rd @@ -0,0 +1,21 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/internals.R +\name{abort_bad_argument} +\alias{abort_bad_argument} +\title{Abord bad argument} +\usage{ +abort_bad_argument(arg, must, not = NULL) +} +\arguments{ +\item{arg}{An argument} + +\item{must}{What arg must be} + +\item{not}{Optional. What arg must not be.} +} +\value{ +A stop statement +} +\description{ +Abord bad argument +} diff --git a/man/add_admin_boundaries.Rd b/man/add_admin_boundaries.Rd new file mode 100644 index 0000000..7d6e3b4 --- /dev/null +++ b/man/add_admin_boundaries.Rd @@ -0,0 +1,37 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_admin_boundaries} +\alias{add_admin_boundaries} +\title{Add admin boundaries (lines) and the legend} +\usage{ +add_admin_boundaries( + lines, + colors, + labels, + lwds, + title = "", + buffer = NULL, + ... +) +} +\arguments{ +\item{lines}{List of multiline shape defined by sf package.} + +\item{colors}{Vector of hexadecimal codes. Same order as lines.} + +\item{labels}{Vector of labels in the legend. Same order as lines.} + +\item{lwds}{Vector of line widths. Same order as lines.} + +\item{title}{Legend title.} + +\item{buffer}{A buffer, either one value or a vector of 4 values (left, bottom, right, top).} + +\item{...}{Other arguments to pass to each shape in `tmap::tm_lines()`.} +} +\value{ +A tmap layer. +} +\description{ +Add admin boundaries (lines) and the legend +} diff --git a/man/add_admin_labels.Rd b/man/add_admin_labels.Rd new file mode 100644 index 0000000..d9691b6 --- /dev/null +++ b/man/add_admin_labels.Rd @@ -0,0 +1,43 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_admin_labels} +\alias{add_admin_labels} +\title{Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels.} +\usage{ +add_admin_labels( + point, + text, + size = 0.5, + fontface = "bold", + fontfamily = "Leelawadee", + shadow = TRUE, + auto_placement = FALSE, + remove_overlap = FALSE, + ... +) +} +\arguments{ +\item{point}{Multipoint shape defined by sf package.} + +\item{text}{Text labels column.} + +\item{size}{Relative size of the text labels.} + +\item{fontface}{Fontface.} + +\item{fontfamily}{Fontfamily. Leelawadee is your precious.} + +\item{shadow}{Boolean. Add a shadow around text labels. Issue opened on Github to request.} + +\item{auto_placement}{Logical that determines whether the labels are placed automatically.} + +\item{remove_overlap}{Logical that determines whether the overlapping labels are removed.} + +\item{...}{Other arguments to pass to `tmap::tm_text()`.} +} +\value{ +A tmap layer. +} +\description{ +Wrapper around `tmap::tm_text()` with sane defaults for plotting admin labels. +} diff --git a/man/add_compass.Rd b/man/add_compass.Rd new file mode 100644 index 0000000..a22f932 --- /dev/null +++ b/man/add_compass.Rd @@ -0,0 +1,34 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_compass} +\alias{add_compass} +\title{Add a compass} +\usage{ +add_compass( + text_size = 0.6, + position = c("right", 0.8), + color_dark = cols_reach("black"), + text_color = cols_reach("black"), + type = "4star", + ... +) +} +\arguments{ +\item{text_size}{Relative font size.} + +\item{position}{Position of the compass. Vector of two values, specifying the x and y coordinates.} + +\item{color_dark}{Color of the dark parts of the compass.} + +\item{text_color}{color of the text.} + +\item{type}{Compass type, one of: "arrow", "4star", "8star", "radar", "rose".} + +\item{...}{Other arguments to pass to `tmap::tm_compass()`.} +} +\value{ +A tmap layer. +} +\description{ +Add a compass +} diff --git a/man/add_credits.Rd b/man/add_credits.Rd new file mode 100644 index 0000000..9410747 --- /dev/null +++ b/man/add_credits.Rd @@ -0,0 +1,25 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_credits} +\alias{add_credits} +\title{Do you want to credit someone or some institution?} +\usage{ +add_credits(text, size = 0.4, bg_color = NA, position = c(0.75, 0.02), ...) +} +\arguments{ +\item{text}{Text.} + +\item{size}{Relative text size.} + +\item{bg_color}{Background color.} + +\item{position}{Position. Vector of two coordinates. Usually somewhere down.} + +\item{...}{Other arguments to pass to `tmap::tm_credits()`.} +} +\value{ +A tmap layer. +} +\description{ +Do you want to credit someone or some institution? +} diff --git a/man/add_indicator_layer.Rd b/man/add_indicator_layer.Rd new file mode 100644 index 0000000..cf54ac2 --- /dev/null +++ b/man/add_indicator_layer.Rd @@ -0,0 +1,61 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_indicator_layer} +\alias{add_indicator_layer} +\title{Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values} +\usage{ +add_indicator_layer( + poly, + col, + buffer = NULL, + n = 5, + style = "pretty", + palette = pal_reach("red_5"), + as_count = TRUE, + color_na = cols_reach("white"), + text_na = "Missing data", + legend_title = "Proportion (\%)", + legend_text_separator = " - ", + border_alpha = 1, + border_col = cols_reach("lt_grey_1"), + lwd = 1, + ... +) +} +\arguments{ +\item{poly}{Multipolygon shape defined by sf package.} + +\item{col}{Numeric attribute to map.} + +\item{buffer}{A buffer, either one value or a vector of 4 values (left, bottom, right, top).} + +\item{n}{The desire number of classes.} + +\item{style}{Method to process the color scale for continuous numerical variables. See `classInt::classIntervals()` for details.} + +\item{palette}{Vector of fill colors as hexadecimal values. For REACH color palettes, it is possible to use `pal_reach()`. For now,'palette' must be changed manually, accordingly to the number of drawn classes.} + +\item{as_count}{Boolean. When col is a numeric variable, should it be processed as a count variable? For instance, 0, 1-10, 11-20.} + +\item{color_na}{Fill color for missing data.} + +\item{text_na}{Legend text for missing data.} + +\item{legend_title}{Legend title.} + +\item{legend_text_separator}{Text separator for classes. E.g. " to " will give 0, 1 to 10, 11 to 20.} + +\item{border_alpha}{Transparency of the border.} + +\item{border_col}{Color of the border.} + +\item{lwd}{Linewidth of the border.} + +\item{...}{Other arguments to pass to `tmap::tm_polygons()`.} +} +\value{ +A tmap layer. +} +\description{ +Wrapper around `tmap::tm_polygons()` with sane defaults for plotting indicator values +} diff --git a/man/add_layout.Rd b/man/add_layout.Rd new file mode 100644 index 0000000..f5c4b53 --- /dev/null +++ b/man/add_layout.Rd @@ -0,0 +1,49 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_layout} +\alias{add_layout} +\title{Basic defaults based on `tmap::tm_layout()`} +\usage{ +add_layout( + title = NULL, + legend_position = c(0.02, 0.5), + frame = FALSE, + legend_frame = cols_reach("main_grey"), + legend_text_size = 0.6, + legend_title_size = 0.8, + title_size = 0.9, + title_fontface = "bold", + title_color = cols_reach("main_grey"), + fontfamily = "Leelawadee", + ... +) +} +\arguments{ +\item{title}{Map title.} + +\item{legend_position}{Legend position. Not above the map is a good start.} + +\item{frame}{Boolean. Legend frame?} + +\item{legend_frame}{Legend frame color.} + +\item{legend_text_size}{Legend text size in 'pt'.} + +\item{legend_title_size}{Legend title size in 'pt'.} + +\item{title_size}{Title text size in 'pt'.} + +\item{title_fontface}{Title fontface. Bold if you wanna exemplify a lot what it is about.} + +\item{title_color}{Title font color.} + +\item{fontfamily}{Overall fontfamily. Leelawadee is your precious.} + +\item{...}{Other arguments to pass to `tmap::tm_layout()`.} +} +\value{ +A tmap layer. +} +\description{ +Basic defaults based on `tmap::tm_layout()` +} diff --git a/man/add_scale_bar.Rd b/man/add_scale_bar.Rd new file mode 100644 index 0000000..b204c3c --- /dev/null +++ b/man/add_scale_bar.Rd @@ -0,0 +1,31 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/map.R +\name{add_scale_bar} +\alias{add_scale_bar} +\title{Add a scale bar} +\usage{ +add_scale_bar( + text_size = 0.6, + position = c("left", 0.01), + color_dark = cols_reach("black"), + breaks = c(0, 50, 100), + ... +) +} +\arguments{ +\item{text_size}{Relative font size.} + +\item{position}{Position of the compass. Vector of two values, specifying the x and y coordinates.} + +\item{color_dark}{Color of the dark parts of the compass.} + +\item{breaks}{Breaks of the scale bar. If not specified, breaks will be automatically be chosen given the prefered width of the scale bar. Example: c(0, 50, 100).} + +\item{...}{Other arguments to pass to `tmap::tm_compass()`.} +} +\value{ +A tmap layer. +} +\description{ +Add a scale bar +} diff --git a/man/bar.Rd b/man/bar.Rd deleted file mode 100644 index 148a326..0000000 --- a/man/bar.Rd +++ /dev/null @@ -1,129 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/bar.R -\name{hbar} -\alias{hbar} -\alias{bar} -\title{Simple bar chart} -\usage{ -hbar( - ..., - flip = TRUE, - add_text = FALSE, - theme_fun = theme_bar(flip = flip, add_text = add_text) -) - -bar( - df, - x, - y, - group = "", - facet = "", - order = "none", - x_rm_na = TRUE, - y_rm_na = TRUE, - group_rm_na = TRUE, - facet_rm_na = TRUE, - y_expand = 0.1, - add_color = color("cat_5_main_1"), - add_color_guide = TRUE, - flip = FALSE, - wrap = NULL, - position = "dodge", - alpha = 1, - x_title = NULL, - y_title = NULL, - group_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - width = 0.8, - add_text = FALSE, - add_text_size = 4.5, - add_text_color = color("dark_grey"), - add_text_font_face = "bold", - add_text_threshold_display = 0.05, - add_text_suffix = "\%", - add_text_expand_limit = 1.2, - add_text_round = 1, - theme_fun = theme_bar(flip = flip, add_text = add_text, axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, axis_text_x_hjust = 0.5), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete() -) -} -\arguments{ -\item{...}{Additional arguments passed to `bar()`} - -\item{flip}{TRUE or FALSE (default). Default to TRUE or horizontal bar plot.} - -\item{add_text}{TRUE or FALSE. Add values as text.} - -\item{theme_fun}{Whatever theme function. For no custom theme, use theme_fun = NULL.} - -\item{df}{A data frame.} - -\item{x}{A quoted numeric column.} - -\item{y}{A quoted character column or coercible as a character column.} - -\item{group}{Some quoted grouping categorical column, e.g. administrative areas or population groups.} - -\item{facet}{Some quoted grouping categorical column, e.g. administrative areas or population groups.} - -\item{order}{A character scalar specifying the order type (one of "none", "y", "grouped"). See details.} - -\item{x_rm_na}{Remove NAs in x?} - -\item{y_rm_na}{Remove NAs in y?} - -\item{group_rm_na}{Remove NAs in group?} - -\item{facet_rm_na}{Remove NAs in facet?} - -\item{y_expand}{Multiplier to expand the y axis.} - -\item{add_color}{Add a color to bars (if no grouping).} - -\item{add_color_guide}{Should a legend be added?} - -\item{wrap}{Should x-labels be wrapped? Number of characters.} - -\item{position}{Should the chart be stacked? Default to "dodge". Can take "dodge" and "stack".} - -\item{alpha}{Fill transparency.} - -\item{x_title}{The x scale title. Default to NULL.} - -\item{y_title}{The y scale title. Default to NULL.} - -\item{group_title}{The group legend title. Default to NULL.} - -\item{title}{Plot title. Default to NULL.} - -\item{subtitle}{Plot subtitle. Default to NULL.} - -\item{caption}{Plot caption. Default to NULL.} - -\item{width}{Bar width.} - -\item{add_text_size}{Text size.} - -\item{add_text_color}{Text color.} - -\item{add_text_font_face}{Text font_face.} - -\item{add_text_threshold_display}{Minimum value to add the text label.} - -\item{add_text_suffix}{If percent is FALSE, should we add a suffix to the text label?} - -\item{add_text_expand_limit}{Default to adding 10\% on top of the bar.} - -\item{add_text_round}{Round the text label.} - -\item{scale_fill_fun}{Scale fill function. Default to scale_fill_visualizer_discrete().} - -\item{scale_color_fun}{Scale color function. Default to scale_color_visualizer_discrete().} -} -\description{ -`bar()` is a simple bar chart with some customization allowed, in particular the `theme_fun` argument for theming. `hbar()` uses `bar()` with sane defaults for a horizontal bar chart. -} diff --git a/man/bar_reach.Rd b/man/bar_reach.Rd new file mode 100644 index 0000000..e3091f6 --- /dev/null +++ b/man/bar_reach.Rd @@ -0,0 +1,82 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/bar.R +\name{bar_reach} +\alias{bar_reach} +\title{Simple bar chart} +\usage{ +bar_reach( + df, + x, + y, + group = NULL, + percent = TRUE, + palette = "main", + reverse = FALSE, + family = "Leelawadee", + alpha = 1, + width = 0.5, + x_title = NULL, + y_title = NULL, + group_title = NULL, + position = "dodge", + title = NULL, + subtitle = NULL, + caption = NULL, + text_size = 10, + title_size = 14, + legend_position = "right", + legend_rev = TRUE, + ... +) +} +\arguments{ +\item{df}{A data frame.} + +\item{x}{A numeric column.} + +\item{y}{A character column or coercible as a character column.} + +\item{group}{Some grouping categorical column, e.g. administrative areas or population groups.} + +\item{percent}{TRUE or FALSE. Should the x-labels be displayed as percentages? Default to TRUE.} + +\item{palette}{Palette name from 'pal_reach()'.} + +\item{reverse}{Boolean indicating whether the palette should be reversed.} + +\item{family}{The font family for all plot's texts. Default to "Leelawadee".} + +\item{alpha}{Transparency.} + +\item{width}{Width.} + +\item{x_title}{The x scale title. Default to NULL.} + +\item{y_title}{The y scale title. Default to NULL.} + +\item{group_title}{The group legend title. Default to NULL.} + +\item{position}{Should the chart be stacked? Default to "dodge". Can take "dodge" and "stack".} + +\item{title}{Plot title. Default to NULL.} + +\item{subtitle}{Plot subtitle. Default to NULL.} + +\item{caption}{Caption title string. Default to NULL.} + +\item{text_size}{The size of all text other than the title, subtitle and caption. Defaults to 10.} + +\item{title_size}{The size of the title text. Defaults to 14.} + +\item{legend_position}{Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none".} + +\item{legend_rev}{Reverse the color in the guide? Default to TRUE.} + +\item{...}{Other arguments to be passed to "ggblanket::gg_col"} +} +\value{ +A bar chart +} +\description{ +`ggblanket` as internals for deciding whether the bar chart is horizontally readable. +} diff --git a/man/border_admin0.Rd b/man/border_admin0.Rd new file mode 100644 index 0000000..cd495f3 --- /dev/null +++ b/man/border_admin0.Rd @@ -0,0 +1,25 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/data.R +\docType{data} +\name{border_admin0} +\alias{border_admin0} +\title{Haïti border.} +\format{ +A sf multiline objet with 1 feature and 6 fields: +\describe{ + \item{fid_1}{fid_1} + \item{uno}{uno} + \item{count}{count} + \item{x_coord}{x_coord} + \item{y_coord}{y_coord} + \item{area}{area} + \item{geometry}{Multiline geometry.} +} +} +\usage{ +border_admin0 +} +\description{ +A multiline shapefile of Haiti's border. +} +\keyword{datasets} diff --git a/man/buffer_bbox.Rd b/man/buffer_bbox.Rd new file mode 100644 index 0000000..066562f --- /dev/null +++ b/man/buffer_bbox.Rd @@ -0,0 +1,19 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/bbox_buffer.R +\name{buffer_bbox} +\alias{buffer_bbox} +\title{Bbbox buffer} +\usage{ +buffer_bbox(sf_obj, buffer = 0) +} +\arguments{ +\item{sf_obj}{A `sf` object} + +\item{buffer}{A buffer, either one value or a vector of 4 values (left, bottom, right, top). Default to 0.} +} +\value{ +A bbox with a buffer +} +\description{ +Bbbox buffer +} diff --git a/man/centroid_admin1.Rd b/man/centroid_admin1.Rd new file mode 100644 index 0000000..c221ac9 --- /dev/null +++ b/man/centroid_admin1.Rd @@ -0,0 +1,28 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/data.R +\docType{data} +\name{centroid_admin1} +\alias{centroid_admin1} +\title{Haïti admin 1 centroids shapefile.} +\format{ +A sf multipoint object with 10 features and 9 fields: +\describe{ + \item{ADM1_PC}{Admin 1 postal code.} + \item{ADM1_EN}{Full name in English.} + \item{ADM1_FR}{Full name in French.} + \item{ADM1_HT}{Full name in Haitian Creole.} + \item{ADM0_EN}{Country name in English.} + \item{ADM0_FR}{Country name in French.} + \item{ADM0_HT}{Country name in Haitian Creole.} + \item{ADM0_PC}{Country postal code.} + \item{ADM1_FR_UPPER}{Admin 1 French name - uppercase.} + \item{geometry}{Multipoint geometry.} +} +} +\usage{ +centroid_admin1 +} +\description{ +A multipoint shapefile of Haiti's admin 1. +} +\keyword{datasets} diff --git a/man/check_vars_in_df.Rd b/man/check_vars_in_df.Rd deleted file mode 100644 index b973b00..0000000 --- a/man/check_vars_in_df.Rd +++ /dev/null @@ -1,19 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/checks.R -\name{check_vars_in_df} -\alias{check_vars_in_df} -\title{Check if variables are in data frame} -\usage{ -check_vars_in_df(df, vars) -} -\arguments{ -\item{df}{A data frame} - -\item{vars}{A vector of variable names} -} -\value{ -A stop statement -} -\description{ -Check if variables are in data frame -} diff --git a/man/color.Rd b/man/color.Rd deleted file mode 100644 index 982fe5e..0000000 --- a/man/color.Rd +++ /dev/null @@ -1,33 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/color.R -\name{color} -\alias{color} -\alias{color_pattern} -\title{Helpers to extract defined colors as hex codes} -\usage{ -color(..., unname = TRUE) - -color_pattern(pattern, unname = TRUE) -} -\arguments{ -\item{...}{Character names of colors. If NULL returns all colors.} - -\item{unname}{Boolean. Should the output vector be unnamed? Default to `TRUE`.} - -\item{pattern}{Pattern of the start of colors' name.} -} -\value{ -Hex codes named or unnamed. -} -\description{ -[color()] returns the requested columns, returns NA if absent. [color_pattern()] returns all colors that start with the pattern. -} -\section{Naming of colors}{ - -* All branding colors start with "branding"; -* All , categorical colors start with ", cat_"; -* All sequential colors start with "seq_"; - -Then, a number indicates the number of colors that belong to the palettes, a string the name of the palette, and, finally, a number the position of the color. E.g., "seq_5_red_4" would be the 4th color of a continuous palettes of 5 colors in the red band. Exception is made for white, light_grey, dark_grey, and black. -} - diff --git a/man/cols_agora.Rd b/man/cols_agora.Rd new file mode 100644 index 0000000..29f603a --- /dev/null +++ b/man/cols_agora.Rd @@ -0,0 +1,22 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/cols_agora.R +\name{cols_agora} +\alias{cols_agora} +\title{Function to extract AGORA colors as hex codes} +\usage{ +cols_agora(..., unnamed = TRUE) +} +\arguments{ +\item{...}{Character names of reach colors. If NULL returns all colors} + +\item{unnamed}{Should the output vector be unnamed? Default to `TRUE`} +} +\value{ +An hex code or hex codes named or unnamed +} +\description{ +Function to extract AGORA colors as hex codes +} +\details{ +This function needs to be modified to add colors +} diff --git a/man/cols_impact.Rd b/man/cols_impact.Rd new file mode 100644 index 0000000..9833a64 --- /dev/null +++ b/man/cols_impact.Rd @@ -0,0 +1,22 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/cols_impact.R +\name{cols_impact} +\alias{cols_impact} +\title{Function to extract IMPACT colors as hex codes} +\usage{ +cols_impact(..., unnamed = TRUE) +} +\arguments{ +\item{...}{Character names of reach colors. If NULL returns all colors} + +\item{unnamed}{Should the output vector be unnamed? Default to `TRUE`} +} +\value{ +An hex code or hex codes named or unnamed +} +\description{ +Function to extract IMPACT colors as hex codes +} +\details{ +This function needs to be modified to add colors +} diff --git a/man/cols_reach.Rd b/man/cols_reach.Rd new file mode 100644 index 0000000..7c0ed87 --- /dev/null +++ b/man/cols_reach.Rd @@ -0,0 +1,22 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/cols_reach.R +\name{cols_reach} +\alias{cols_reach} +\title{Function to extract REACH colors as hex codes} +\usage{ +cols_reach(..., unnamed = TRUE) +} +\arguments{ +\item{...}{Character names of reach colors. If NULL returns all colors} + +\item{unnamed}{Should the output vector be unnamed? Default to `TRUE`} +} +\value{ +An hex code or hex codes named or unnamed +} +\description{ +Function to extract REACH colors as hex codes +} +\details{ +This function needs to be modified to add colors +} diff --git a/man/dumbbell.Rd b/man/dumbbell.Rd deleted file mode 100644 index 83a307f..0000000 --- a/man/dumbbell.Rd +++ /dev/null @@ -1,91 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/dumbbell.R -\name{dumbbell} -\alias{dumbbell} -\title{Make dumbbell chart.} -\usage{ -dumbbell( - df, - col, - group_x, - group_y, - point_size = 5, - point_alpha = 1, - segment_size = 2.5, - segment_color = color("light_blue_grey"), - group_x_title = NULL, - group_y_title = NULL, - x_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - line_to_y_axis = FALSE, - line_to_y_axis_type = 3, - line_to_y_axis_width = 0.5, - line_to_y_axis_color = color("dark_grey"), - add_text = FALSE, - add_text_vjust = 2, - add_text_size = 3.5, - add_text_color = color("dark_grey"), - theme_fun = theme_dumbbell(), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete() -) -} -\arguments{ -\item{df}{A data frame.} - -\item{col}{A numeric column.} - -\item{group_x}{The grouping column on the x-axis; only two groups.} - -\item{group_y}{The grouping column on the y-axis.} - -\item{point_size}{Point size.} - -\item{point_alpha}{Point alpha.} - -\item{segment_size}{Segment size.} - -\item{segment_color}{Segment color.} - -\item{group_x_title}{X-group and legend title.} - -\item{group_y_title}{Y-axis and group title.} - -\item{x_title}{X-axis title.} - -\item{title}{Title.} - -\item{subtitle}{Subtitle.} - -\item{caption}{Caption.} - -\item{line_to_y_axis}{TRUE or FALSE; add a line connected points and Y-axis.} - -\item{line_to_y_axis_type}{Line to Y-axis type.} - -\item{line_to_y_axis_width}{Line to Y-axis width.} - -\item{line_to_y_axis_color}{Line to Y-axis color.} - -\item{add_text}{TRUE or FALSE; add text at the points.} - -\item{add_text_vjust}{Vertical adjustment.} - -\item{add_text_size}{Text size.} - -\item{add_text_color}{Text color.} - -\item{theme_fun}{A ggplot2 theme, default to `theme_dumbbell()`} - -\item{scale_fill_fun}{A ggplot2 scale_fill function, default to `scale_fill_visualizer_discrete()`} - -\item{scale_color_fun}{A ggplot2 scale_color function, default to `scale_color_visualizer_discrete()`} -} -\value{ -A dumbbell chart. -} -\description{ -Make dumbbell chart. -} diff --git a/man/figures/README-example-alluvial-plot-1.png b/man/figures/README-example-alluvial-plot-1.png deleted file mode 100644 index 33a0499..0000000 Binary files a/man/figures/README-example-alluvial-plot-1.png and /dev/null differ diff --git a/man/figures/README-example-bar-chart-1.png b/man/figures/README-example-bar-chart-1.png index 8b5ff08..d423d85 100644 Binary files a/man/figures/README-example-bar-chart-1.png and b/man/figures/README-example-bar-chart-1.png differ diff --git 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frontier with Dominican Republic.} +\format{ +A sf multipoint objet with 4 features and 8 fields: +\describe{ + \item{fid_1}{fid_1} + \item{objectid}{objectid} + \item{id}{id} + \item{fromnode}{fromnode} + \item{tonode}{tonode} + \item{leftpolygo}{leftpolygo} + \item{rightpolygo}{rightpolygo} + \item{shape_leng}{shape_leng} + \item{geometry}{Multiline geometry.} +} +} +\usage{ +frontier_admin0 +} +\description{ +A multiline shapefile of Haiti's frontier with Dominican Republic. +} +\keyword{datasets} diff --git a/man/grapes-notallin-grapes.Rd b/man/grapes-notallin-grapes.Rd deleted file mode 100644 index 35fc728..0000000 --- a/man/grapes-notallin-grapes.Rd +++ /dev/null @@ -1,19 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/internals.R -\name{\%notallin\%} -\alias{\%notallin\%} -\title{Not All In Operator} -\usage{ -a \%notallin\% b -} -\arguments{ -\item{a}{Vector to test} - -\item{b}{Vector to test against} -} -\value{ -TRUE if at least one element of `a` is not in `b`, otherwise FALSE -} -\description{ -Tests if not all elements of `a` are contained in `b`. -} diff --git a/man/grapes-notin-grapes.Rd b/man/grapes-notin-grapes.Rd deleted file mode 100644 index 22ff48c..0000000 --- a/man/grapes-notin-grapes.Rd +++ /dev/null @@ -1,19 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/internals.R -\name{\%notin\%} -\alias{\%notin\%} -\title{Not In Operator} -\usage{ -a \%notin\% b -} -\arguments{ -\item{a}{Vector or value to test} - -\item{b}{Vector to test against} -} -\value{ -Logical vector with TRUE for elements of `a` that are not in `b` -} -\description{ -A negation of the `%in%` operator that tests if elements of `a` are not in `b`. -} diff --git a/man/if_not_in_stop.Rd b/man/if_not_in_stop.Rd new file mode 100644 index 0000000..bb29dea --- /dev/null +++ b/man/if_not_in_stop.Rd @@ -0,0 +1,23 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/internals.R +\name{if_not_in_stop} +\alias{if_not_in_stop} +\title{Stop statement "If not in colnames" with colnames} +\usage{ +if_not_in_stop(.tbl, cols, df, arg = NULL) +} +\arguments{ +\item{.tbl}{A tibble} + +\item{cols}{A vector of column names (quoted)} + +\item{df}{Provide the tibble name as a character string} + +\item{arg}{Default to NULL.} +} +\value{ +A stop statement +} +\description{ +Stop statement "If not in colnames" with colnames +} diff --git a/man/if_vec_not_in_stop.Rd b/man/if_vec_not_in_stop.Rd new file mode 100644 index 0000000..56d228f --- /dev/null +++ b/man/if_vec_not_in_stop.Rd @@ -0,0 +1,23 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/internals.R +\name{if_vec_not_in_stop} +\alias{if_vec_not_in_stop} +\title{Stop statement "If not in vector"} +\usage{ +if_vec_not_in_stop(vec, cols, vec_name, arg = NULL) +} +\arguments{ +\item{vec}{A vector of character strings} + +\item{cols}{A set of character strings} + +\item{vec_name}{Provide the vector name as a character string} + +\item{arg}{Default to NULL.} +} +\value{ +A stop statement if some elements of vec are not in cols +} +\description{ +Stop statement "If not in vector" +} diff --git a/man/indicator_admin1.Rd b/man/indicator_admin1.Rd new file mode 100644 index 0000000..673ee1b --- /dev/null +++ b/man/indicator_admin1.Rd @@ -0,0 +1,29 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/data.R +\docType{data} +\name{indicator_admin1} +\alias{indicator_admin1} +\title{Indicator admin 1 polygons shapefile.} +\format{ +A sf multipoint object with 10 features and 10 fields: +\describe{ + \item{ADM1_PC}{Admin 1 postal code.} + \item{admin1}{Admin 1 unique id.} + \item{opn_dfc}{Proportion of HHs that reported open defecation as sanitation facility.} + \item{ADM1_EN}{Full name in English.} + \item{ADM1_FR}{Full name in French.} + \item{ADM1_HT}{Full name in Haitian Creole.} + \item{ADM0_EN}{Country name in English.} + \item{ADM0_FR}{Country name in French.} + \item{ADM0_HT}{Country name in Haitian Creole.} + \item{ADM0_PC}{Country postal code.} + \item{geometry}{Multipolygon geometry.} +} +} +\usage{ +indicator_admin1 +} +\description{ +A multipolygon shapefile of Haiti's admin 1 with an indicator column 'opn_dfc'. +} +\keyword{datasets} diff --git a/man/line_admin1.Rd b/man/line_admin1.Rd new file mode 100644 index 0000000..49f72e4 --- /dev/null +++ b/man/line_admin1.Rd @@ -0,0 +1,26 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/data.R +\docType{data} +\name{line_admin1} +\alias{line_admin1} +\title{Haïti admin 1 lines shapefile.} +\format{ +A sf multiline object with 10 features and 8 fields: +\describe{ + \item{ADM1_EN}{Full name in English.} + \item{ADM1_FR}{Full name in French.} + \item{ADM1_HT}{Full name in Haitian Creole.} + \item{ADM0_EN}{Country name in English.} + \item{ADM0_FR}{Country name in French.} + \item{ADM0_HT}{Country name in Haitian Creole.} + \item{ADM0_PCODE}{Country postal code.} + \item{geometry}{Multiline geometry.} +} +} +\usage{ +line_admin1 +} +\description{ +A multiline shapefile of Haiti's admin 1. +} +\keyword{datasets} diff --git a/man/lollipop.Rd b/man/lollipop.Rd deleted file mode 100644 index 4604349..0000000 --- a/man/lollipop.Rd +++ /dev/null @@ -1,119 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/lollipop.R -\name{hlollipop} -\alias{hlollipop} -\alias{lollipop} -\title{Simple lollipop chart} -\usage{ -hlollipop(..., flip = TRUE, theme_fun = theme_lollipop(flip = flip)) - -lollipop( - df, - x, - y, - group = "", - facet = "", - order = "y", - x_rm_na = TRUE, - y_rm_na = TRUE, - group_rm_na = TRUE, - facet_rm_na = TRUE, - y_expand = 0.1, - add_color = color("cat_5_main_1"), - add_color_guide = TRUE, - flip = FALSE, - wrap = NULL, - alpha = 1, - x_title = NULL, - y_title = NULL, - group_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - dot_size = 4, - line_size = 0.8, - line_color = color("dark_grey"), - dodge_width = 0.9, - theme_fun = theme_lollipop(flip = flip, axis_text_x_angle = 0, axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete() -) -} -\arguments{ -\item{...}{Additional arguments passed to `lollipop()`} - -\item{flip}{TRUE or FALSE (default). Default to TRUE or horizontal lollipop plot.} - -\item{theme_fun}{Whatever theme function. For no custom theme, use theme_fun = NULL.} - -\item{df}{A data frame.} - -\item{x}{A quoted character column or coercible as a character column.} - -\item{y}{A quoted numeric column.} - -\item{group}{Some quoted grouping categorical column, e.g. administrative areas or population groups.} - -\item{facet}{Some quoted grouping categorical column, e.g. administrative areas or population groups.} - -\item{order}{A character scalar specifying the order type (one of "none", "y", "grouped"). See details.} - -\item{x_rm_na}{Remove NAs in x?} - -\item{y_rm_na}{Remove NAs in y?} - -\item{group_rm_na}{Remove NAs in group?} - -\item{facet_rm_na}{Remove NAs in facet?} - -\item{y_expand}{Multiplier to expand the y axis.} - -\item{add_color}{Add a color to dots (if no grouping).} - -\item{add_color_guide}{Should a legend be added?} - -\item{wrap}{Should x-labels be wrapped? Number of characters.} - -\item{alpha}{Fill transparency for dots.} - -\item{x_title}{The x scale title. Default to NULL.} - -\item{y_title}{The y scale title. Default to NULL.} - -\item{group_title}{The group legend title. Default to NULL.} - -\item{title}{Plot title. Default to NULL.} - -\item{subtitle}{Plot subtitle. Default to NULL.} - -\item{caption}{Plot caption. Default to NULL.} - -\item{dot_size}{The size of the dots.} - -\item{line_size}{The size/width of the line connecting dots to the baseline.} - -\item{line_color}{The color of the line connecting dots to the baseline.} - -\item{dodge_width}{Width for position dodge when using groups (controls space between grouped lollipops).} - -\item{scale_fill_fun}{Scale fill function. Default to scale_fill_visualizer_discrete().} - -\item{scale_color_fun}{Scale color function. Default to scale_color_visualizer_discrete().} -} -\value{ -A ggplot object -} -\description{ -`lollipop()` is a simple lollipop chart (dots connected to the baseline by a segment) with some customization allowed. -`hlollipop()` uses `lollipop()` with sane defaults for a horizontal lollipop chart. -} -\examples{ -\dontrun{ -df <- data.frame(x = letters[1:5], y = c(10, 5, 7, 12, 8)) -# Vertical lollipop -lollipop(df, "x", "y") -# Horizontal lollipop -hlollipop(df, "x", "y") -} -} diff --git a/man/pal_agora.Rd b/man/pal_agora.Rd new file mode 100644 index 0000000..71b9921 --- /dev/null +++ b/man/pal_agora.Rd @@ -0,0 +1,31 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/pal_agora.R +\name{pal_agora} +\alias{pal_agora} +\title{Return function to interpolate an AGORA color palette} +\usage{ +pal_agora( + palette = "main", + reverse = FALSE, + color_ramp_palette = FALSE, + show_palettes = FALSE, + ... +) +} +\arguments{ +\item{palette}{Character name of a palette in AGORA palettes} + +\item{reverse}{Boolean indicating whether the palette should be reversed} + +\item{color_ramp_palette}{Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the former with `TRUE`} + +\item{show_palettes}{Should the ouput be the set of palettes names to pick from? Default to `FALSE`} + +\item{...}{Additional arguments to pass to colorRampPalette()} +} +\value{ +A color palette +} +\description{ +Return function to interpolate an AGORA color palette +} diff --git a/man/pal_impact.Rd b/man/pal_impact.Rd new file mode 100644 index 0000000..a3a16a2 --- /dev/null +++ b/man/pal_impact.Rd @@ -0,0 +1,31 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/pal_impact.R +\name{pal_impact} +\alias{pal_impact} +\title{Return function to interpolate an IMPACT color palette} +\usage{ +pal_impact( + palette = "main", + reverse = FALSE, + color_ramp_palette = FALSE, + show_palettes = FALSE, + ... +) +} +\arguments{ +\item{palette}{Character name of a palette in IMPACT palettes} + +\item{reverse}{Boolean indicating whether the palette should be reversed} + +\item{color_ramp_palette}{Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the former with `TRUE`} + +\item{show_palettes}{Should the ouput be the set of palettes names to pick from? Default to `FALSE`} + +\item{...}{Additional arguments to pass to colorRampPalette()} +} +\value{ +A color palette +} +\description{ +Return function to interpolate an IMPACT color palette +} diff --git a/man/pal_reach.Rd b/man/pal_reach.Rd new file mode 100644 index 0000000..4d32f98 --- /dev/null +++ b/man/pal_reach.Rd @@ -0,0 +1,31 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/pal_reach.R +\name{pal_reach} +\alias{pal_reach} +\title{Return function to interpolate a REACH color palette} +\usage{ +pal_reach( + palette = "main", + reverse = FALSE, + color_ramp_palette = FALSE, + show_palettes = FALSE, + ... +) +} +\arguments{ +\item{palette}{Character name of a palette in REACH palettes} + +\item{reverse}{Boolean indicating whether the palette should be reversed} + +\item{color_ramp_palette}{Should the output be a `grDevices::colorRampPalette` function or a vector of hex codes? Default to the former with `TRUE`} + +\item{show_palettes}{Should the ouput be the set of palettes names to pick from? Default to `FALSE`} + +\item{...}{Additional arguments to pass to colorRampPalette()} +} +\value{ +A color palette +} +\description{ +Return function to interpolate a REACH color palette +} diff --git a/man/palette.Rd b/man/palette.Rd deleted file mode 100644 index c17f4b5..0000000 --- a/man/palette.Rd +++ /dev/null @@ -1,23 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/palette.R -\name{palette} -\alias{palette} -\title{Interpolate a color palette} -\usage{ -palette(palette = "cat_5_main", reverse = FALSE, show_palettes = FALSE, ...) -} -\arguments{ -\item{palette}{Character name of a palette in palettes} - -\item{reverse}{Boolean indicating whether the palette should be reversed} - -\item{show_palettes}{Should the ouput be the set of palettes names to pick from? Default to `FALSE`} - -\item{...}{Additional arguments to pass to colorRampPalette()} -} -\value{ -A color palette -} -\description{ -Interpolate a color palette -} diff --git a/man/palette_gen.Rd b/man/palette_gen.Rd deleted file mode 100644 index 1fe26c3..0000000 --- a/man/palette_gen.Rd +++ /dev/null @@ -1,26 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/palette_gen.R -\name{palette_gen} -\alias{palette_gen} -\alias{palette_gen_categorical} -\alias{palette_gen_sequential} -\title{Generate color palettes} -\usage{ -palette_gen(palette, type, direction = 1, ...) - -palette_gen_categorical(palette = "cat_5_main", direction = 1) - -palette_gen_sequential(palette = "cat_5_main", direction = 1, ...) -} -\arguments{ -\item{palette}{Palette name from [palette()].} - -\item{type}{"categorical" or "sequential" or "divergent".} - -\item{direction}{1 or -1; should the order of colors be reversed?} - -\item{...}{Additional arguments to pass to [colorRampPalette()] when type is "continuous".} -} -\description{ -[palette_gen()] generates a color palette and let you choose whether continuous or discrete. [palette_gen_categorical()] and [palette_gen_sequential()] generates respectively discrete and continuous palettes. -} diff --git a/man/point.Rd b/man/point.Rd deleted file mode 100644 index 843f93f..0000000 --- a/man/point.Rd +++ /dev/null @@ -1,85 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/point.R -\name{point} -\alias{point} -\title{Simple scatterplot} -\usage{ -point( - df, - x, - y, - group = "", - facet = "", - facet_scales = "free", - x_rm_na = TRUE, - y_rm_na = TRUE, - group_rm_na = TRUE, - facet_rm_na = TRUE, - add_color = color("cat_5_main_1"), - add_color_guide = TRUE, - flip = TRUE, - alpha = 1, - size = 2, - x_title = NULL, - y_title = NULL, - group_title = NULL, - title = NULL, - subtitle = NULL, - caption = NULL, - theme_fun = theme_point(), - scale_fill_fun = scale_fill_visualizer_discrete(), - scale_color_fun = scale_color_visualizer_discrete() -) -} -\arguments{ -\item{df}{A data frame.} - -\item{x}{A quoted numeric column.} - -\item{y}{A quoted numeric column.} - -\item{group}{Some quoted grouping categorical column, e.g. administrative areas or population groups.} - -\item{facet}{Some quoted grouping categorical column.} - -\item{facet_scales}{Character. Either "free" (default) or "fixed" for facet scales.} - -\item{x_rm_na}{Remove NAs in x?} - -\item{y_rm_na}{Remove NAs in y?} - -\item{group_rm_na}{Remove NAs in group?} - -\item{facet_rm_na}{Remove NAs in facet?} - -\item{add_color}{Add a color to points (if no grouping).} - -\item{add_color_guide}{Should a legend be added?} - -\item{flip}{TRUE or FALSE.} - -\item{alpha}{Fill transparency.} - -\item{size}{Point size.} - -\item{x_title}{The x scale title. Default to NULL.} - -\item{y_title}{The y scale title. Default to NULL.} - -\item{group_title}{The group legend title. Default to NULL.} - -\item{title}{Plot title. Default to NULL.} - -\item{subtitle}{Plot subtitle. Default to NULL.} - -\item{caption}{Plot caption. Default to NULL.} - -\item{theme_fun}{Whatever theme. Default to theme_point(). NULL if no theming needed.} - -\item{scale_fill_fun}{Scale fill function. Default to scale_fill_visualizer_discrete().} - -\item{scale_color_fun}{Scale color function. Default to scale_color_visualizer_discrete().} -} -\description{ -Simple scatterplot -} diff --git a/man/point_reach.Rd b/man/point_reach.Rd new file mode 100644 index 0000000..d069f4c --- /dev/null +++ b/man/point_reach.Rd @@ -0,0 +1,73 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/point.R +\name{point_reach} +\alias{point_reach} +\title{Simple point chart} +\usage{ +point_reach( + df, + x, + y, + group = NULL, + palette = "main", + reverse = FALSE, + family = "Leelawadee", + alpha = 1, + size = 1.5, + x_title = NULL, + y_title = NULL, + group_title = NULL, + title = NULL, + subtitle = NULL, + caption = NULL, + text_size = 10, + title_size = 14, + legend_position = "right", + ... +) +} +\arguments{ +\item{df}{A data frame.} + +\item{x}{A numeric column.} + +\item{y}{A character column or coercible as a character column.} + +\item{group}{Some grouping categorical column, e.g. administrative areas or population groups.} + +\item{palette}{Palette name from 'pal_reach()'.} + +\item{reverse}{Boolean indicating whether the palette should be reversed.} + +\item{family}{The font family for all plot's texts. Default to "Leelawadee".} + +\item{alpha}{Transparency.} + +\item{size}{Dot size. Default to 1.5.} + +\item{x_title}{The x scale title. Default to NULL.} + +\item{y_title}{The y scale title. Default to NULL.} + +\item{group_title}{The group legend title. Default to NULL.} + +\item{title}{Plot title. Default to NULL.} + +\item{subtitle}{Plot subtitle. Default to NULL.} + +\item{caption}{Caption title string. Default to NULL.} + +\item{text_size}{The size of all text other than the title, subtitle and caption. Defaults to 10.} + +\item{title_size}{The size of the title text. Defaults to 14.} + +\item{legend_position}{Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none".} + +\item{...}{Other arguments to be passed to "ggblanket::gg_col"} +} +\value{ +A bar chart +} +\description{ +`ggblanket` as internals for deciding whether the bar chart is horizontally readable. +} diff --git a/man/reorder_by.Rd b/man/reorder_by.Rd deleted file mode 100644 index aed3c01..0000000 --- a/man/reorder_by.Rd +++ /dev/null @@ -1,42 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/reorder_by.R -\name{reorder_by} -\alias{reorder_by} -\title{Reorder a Data Frame} -\usage{ -reorder_by(df, x, y, group = "", order = "y", dir_order = 1) -} -\arguments{ -\item{df}{A data frame to be reordered.} - -\item{x}{A character scalar specifying the column to be reordered.} - -\item{y}{A character scalar specifying the column to order by if ordering by values.} - -\item{group}{A character scalar specifying the grouping column (optional).} - -\item{order}{A character scalar specifying the order type (one of "none", "y", "grouped"). See details.} - -\item{dir_order}{A logical scalar specifying whether to flip the order.} -} -\value{ -The reordered data frame. -} -\description{ -Reorder a Data Frame -} -\details{ -Ordering takes the following possible values: - -* "none": No reordering. -* "y": Order by values of y. -* "grouped_y": Order by values of y and group. -* "x": Order alphabetically by x. -* "grouped_x": Order alphabetically by x and group. -} -\examples{ -# Example usage -df <- data.frame(col1 = c("b", "a", "c"), col2 = c(10, 25, 3)) -reorder_by(df, "col1", "col2") - -} diff --git a/man/scale_color.Rd b/man/scale_color.Rd new file mode 100644 index 0000000..c05dcf9 --- /dev/null +++ b/man/scale_color.Rd @@ -0,0 +1,35 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/scale.R +\name{scale_color} +\alias{scale_color} +\title{Color scale constructor for REACH or AGORA colors} +\usage{ +scale_color( + initiative = "reach", + palette = "main", + discrete = TRUE, + reverse = FALSE, + reverse_guide = TRUE, + ... +) +} +\arguments{ +\item{initiative}{Either "reach" or "agora.} + +\item{palette}{Palette name from `pal_reach()` or `pal_agora()`.} + +\item{discrete}{Boolean indicating whether color aesthetic is discrete or not.} + +\item{reverse}{Boolean indicating whether the palette should be reversed.} + +\item{reverse_guide}{Boolean indicating whether the guide should be reversed.} + +\item{...}{Additional arguments passed to discrete_scale() or +scale_fill_gradient(), used respectively when discrete is TRUE or FALSE.} +} +\value{ +A color scale for ggplot +} +\description{ +Color scale constructor for REACH or AGORA colors +} diff --git a/man/scale_color_visualizer_discrete.Rd b/man/scale_color_visualizer_discrete.Rd deleted file mode 100644 index 1e1be58..0000000 --- a/man/scale_color_visualizer_discrete.Rd +++ /dev/null @@ -1,55 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/scale.R -\name{scale_color_visualizer_discrete} -\alias{scale_color_visualizer_discrete} -\alias{scale_fill_visualizer_discrete} -\alias{scale_fill_visualizer_continuous} -\alias{scale_color_visualizer_continuous} -\title{Scale constructors for fill and colors} -\usage{ -scale_color_visualizer_discrete( - palette = "cat_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ... -) - -scale_fill_visualizer_discrete( - palette = "cat_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ... -) - -scale_fill_visualizer_continuous( - palette = "seq_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ... -) - -scale_color_visualizer_continuous( - palette = "seq_5_main", - direction = 1, - reverse_guide = TRUE, - title_position = NULL, - ... -) -} -\arguments{ -\item{palette}{Palette name from [palette()].} - -\item{direction}{1 or -1; should the order of colors be reversed?} - -\item{reverse_guide}{Boolean indicating whether the guide should be reversed.} - -\item{title_position}{Position of the title. See [ggplot2::guide_legend()]'s title.position argument.} - -\item{...}{Additional arguments passed to [ggplot2::discrete_scale()] if discrete or [ggplot2::scale_fill_gradient()] if continuous.} -} -\description{ -This function is based on [palette()]. If palette is NULL, the used palette will be magma from gpplot2's viridis scale constructors. -} diff --git a/man/scale_fill.Rd b/man/scale_fill.Rd new file mode 100644 index 0000000..b07d1a8 --- /dev/null +++ b/man/scale_fill.Rd @@ -0,0 +1,35 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/scale.R +\name{scale_fill} +\alias{scale_fill} +\title{Fill scale constructor for REACH or AGORA colors} +\usage{ +scale_fill( + initiative = "reach", + palette = "main", + discrete = TRUE, + reverse = FALSE, + reverse_guide = TRUE, + ... +) +} +\arguments{ +\item{initiative}{Either "reach" or "agora.} + +\item{palette}{Palette name from `pal_reach()` or `pal_agora()`.} + +\item{discrete}{Boolean indicating whether color aesthetic is discrete or not.} + +\item{reverse}{Boolean indicating whether the palette should be reversed.} + +\item{reverse_guide}{Boolean indicating whether the guide should be reversed.} + +\item{...}{Additional arguments passed to discrete_scale() or +scale_fill_gradient(), used respectively when discrete is TRUE or FALSE.} +} +\value{ +A fill scale for ggplot. +} +\description{ +Fill scale constructor for REACH or AGORA colors +} diff --git a/man/subvec_not_in.Rd b/man/subvec_not_in.Rd new file mode 100644 index 0000000..90d4d58 --- /dev/null +++ b/man/subvec_not_in.Rd @@ -0,0 +1,19 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/internals.R +\name{subvec_not_in} +\alias{subvec_not_in} +\title{Subvec not in} +\usage{ +subvec_not_in(vector, set) +} +\arguments{ +\item{vector}{A vector to subset} + +\item{set}{A set-vector} +} +\value{ +A subset of vector not in set +} +\description{ +Subvec not in +} diff --git a/man/theme_default.Rd b/man/theme_default.Rd deleted file mode 100644 index 7726fcc..0000000 --- a/man/theme_default.Rd +++ /dev/null @@ -1,269 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/theme_bar.R, R/theme_default.R, -% R/theme_dumbbell.R, R/theme_lollipop.R, R/theme_point.R -\name{theme_bar} -\alias{theme_bar} -\alias{theme_default} -\alias{theme_dumbbell} -\alias{theme_lollipop} -\alias{theme_point} -\title{Custom Theme for Bar Charts} -\usage{ -theme_bar( - flip = TRUE, - add_text = FALSE, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5 -) - -theme_default( - title_font_family = "Carlito", - title_size = 20, - title_color = color("dark_grey"), - title_font_face = "bold", - title_hjust = NULL, - title_position_to_plot = TRUE, - subtitle_font_family = "Carlito", - subtitle_size = 16, - subtitle_color = color("dark_grey"), - subtitle_font_face = "plain", - subtitle_hjust = NULL, - text_font_family = "Carlito", - text_size = 14, - text_color = color("dark_grey"), - text_font_face = "plain", - panel_background_color = "#FFFFFF", - panel_border = FALSE, - panel_border_color = color("dark_grey"), - legend_position = "top", - legend_direction = "horizontal", - legend_justification = "center", - legend_reverse = TRUE, - legend_title_size = 14, - legend_title_color = color("dark_grey"), - legend_title_font_face = "plain", - legend_title_font_family = "Carlito", - legend_text_size = 14, - legend_text_color = color("dark_grey"), - legend_text_font_face = "plain", - legend_text_font_family = "Carlito", - facet_size = 15, - facet_color = color("dark_grey"), - facet_font_face = "bold", - facet_font_family = "Carlito", - facet_bg_color = color("lighter_grey"), - axis_x = TRUE, - axis_y = TRUE, - axis_text_x = TRUE, - axis_line_x = FALSE, - axis_ticks_x = FALSE, - axis_text_y = TRUE, - axis_line_y = TRUE, - axis_ticks_y = TRUE, - axis_text_font_family = "Carlito", - axis_text_size = 14, - axis_text_color = color("dark_grey"), - axis_text_font_face = "plain", - axis_title_size = 15, - axis_title_color = color("dark_grey"), - axis_title_font_face = "plain", - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5, - grid_major_x = TRUE, - grid_major_y = FALSE, - grid_major_color = color("dark_grey"), - grid_major_x_size = 0.1, - grid_major_y_size = 0.1, - grid_minor_x = TRUE, - grid_minor_y = FALSE, - grid_minor_color = color("dark_grey"), - grid_minor_x_size = 0.05, - grid_minor_y_size = 0.05, - caption_font_family = "Carlito", - caption_font_face = "plain", - caption_position_to_plot = TRUE, - caption_size = 12, - caption_color = color("dark_grey"), - ... -) - -theme_dumbbell() - -theme_lollipop( - flip = TRUE, - axis_text_x_angle = 0, - axis_text_x_vjust = 0.5, - axis_text_x_hjust = 0.5 -) - -theme_point() -} -\arguments{ -\item{flip}{Logical. Whether the plot is flipped (horizontal).} - -\item{add_text}{TRUE or FALSE. Add values as text.} - -\item{axis_text_x_angle}{Angle for x-axis text.} - -\item{axis_text_x_vjust}{Vertical justification for x-axis text.} - -\item{axis_text_x_hjust}{Horizontal justification for x-axis text.} - -\item{title_font_family}{Title font family. Default to "Carlito".} - -\item{title_size}{The size of the title. Defaults to 12.} - -\item{title_color}{Title color.} - -\item{title_font_face}{Title font face. Default to "bold". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{title_hjust}{Title horizontal justification. Default to NULL. Use 0.5 to center the title.} - -\item{title_position_to_plot}{TRUE or FALSE. Positioning to plot or to panel?} - -\item{subtitle_font_family}{Subtitle font family. Default to "Carlito".} - -\item{subtitle_size}{The size of the subtitle. Defaults to 10.} - -\item{subtitle_color}{Subtitle color.} - -\item{subtitle_font_face}{Subtitle font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{subtitle_hjust}{Subtitle horizontal justification. Default to NULL. Use 0.5 to center the subtitle.} - -\item{text_font_family}{Text font family. Default to "Carlito".} - -\item{text_size}{The size of all text other than the title, subtitle and caption. Defaults to 10.} - -\item{text_color}{Text color.} - -\item{text_font_face}{Text font face. Default to "bold". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{panel_background_color}{The color for the panel background color. Default to white.} - -\item{panel_border}{Boolean. Plot a panel border? Default to FALSE.} - -\item{panel_border_color}{A color. Default to REACH main grey.} - -\item{legend_position}{Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none".} - -\item{legend_direction}{Direction of the legend. Default to "vertical". Can take "vertical" or "horizontal".} - -\item{legend_justification}{In addition to legend_direction, place the legend. Can take "left", "bottom", "center", "right", "top".} - -\item{legend_reverse}{Reverse the color in the guide? Default to TRUE.} - -\item{legend_title_size}{Legend title size.} - -\item{legend_title_color}{Legend title color.} - -\item{legend_title_font_face}{Legend title font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{legend_title_font_family}{Legend title font family. Default to "Carlito".} - -\item{legend_text_size}{Legend text size.} - -\item{legend_text_color}{Legend text color.} - -\item{legend_text_font_face}{Legend text font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{legend_text_font_family}{Legend text font family. Default to "Carlito".} - -\item{facet_size}{Facet font size.} - -\item{facet_color}{Facet font color.} - -\item{facet_font_face}{Facet font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{facet_font_family}{Facet font family. Default to "Carlito".} - -\item{facet_bg_color}{Facet background color.} - -\item{axis_x}{Boolean. Do you need x-axis?} - -\item{axis_y}{Boolean. Do you need y-axis?} - -\item{axis_text_x}{Boolean. Do you need the text for the x-axis?} - -\item{axis_line_x}{Boolean. Do you need the line for the x-axis?} - -\item{axis_ticks_x}{Boolean. Do you need the line for the x-axis?} - -\item{axis_text_y}{Boolean. Do you need the text for the y-axis?} - -\item{axis_line_y}{Boolean. Do you need the line for the y-axis?} - -\item{axis_ticks_y}{Boolean. Do you need the line for the y-axis?} - -\item{axis_text_font_family}{Axis text font family. Default to "Carlito".} - -\item{axis_text_size}{Axis text size.} - -\item{axis_text_color}{Axis text color.} - -\item{axis_text_font_face}{Axis text font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{axis_title_size}{Axis title size.} - -\item{axis_title_color}{Axis title color.} - -\item{axis_title_font_face}{Axis title font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{grid_major_x}{Boolean. Do you need major grid lines for x-axis?} - -\item{grid_major_y}{Boolean. Do you need major grid lines for y-axis?} - -\item{grid_major_color}{Major grid lines color.} - -\item{grid_major_x_size}{Major X line size.} - -\item{grid_major_y_size}{Major Y line size.} - -\item{grid_minor_x}{Boolean. Do you need minor grid lines for x-axis?} - -\item{grid_minor_y}{Boolean. Do you need minor grid lines for y-axis?} - -\item{grid_minor_color}{Minor grid lines color.} - -\item{grid_minor_x_size}{Minor X line size.} - -\item{grid_minor_y_size}{Minor Y line size.} - -\item{caption_font_family}{Caption font family. Default to "Carlito".} - -\item{caption_font_face}{Caption font face. Default to "plain". Font face ("plain", "italic", "bold", "bold.italic").} - -\item{caption_position_to_plot}{TRUE or FALSE. Positioning to plot or to panel?} - -\item{caption_size}{The size of the caption. Defaults to 10.} - -\item{caption_color}{Caption color.} - -\item{...}{Additional arguments passed to [ggplot2::theme()].} -} -\value{ -A custom theme object. - -A ggplot2 theme object - -A custom theme object. -} -\description{ -Give some reach colors and fonts to a ggplot. - -Theme for dumbbell charts based on theme_default. - -A custom theme specifically designed for lollipop charts with appropriate grid lines and axis styling -based on whether the chart is flipped (horizontal) or not. -} -\examples{ -\dontrun{ -library(ggplot2) -df <- data.frame(x = letters[1:5], y = c(10, 5, 7, 12, 8)) -ggplot(df, aes(x, y)) + - geom_point() + - theme_lollipop() -} -} diff --git a/man/theme_reach.Rd b/man/theme_reach.Rd new file mode 100644 index 0000000..3ad58ed --- /dev/null +++ b/man/theme_reach.Rd @@ -0,0 +1,52 @@ +% Generated by roxygen2: do not edit by hand +% Please edit documentation in R/theme_reach.R +\name{theme_reach} +\alias{theme_reach} +\title{ggplot2 theme with REACH color palettes} +\usage{ +theme_reach( + palette = "main", + discrete = TRUE, + reverse = FALSE, + family = "Leelawadee", + text_size = 10, + title_size = 14, + plot_background_pal = "#FFFFFF", + panel_background_pal = "#FFFFFF", + legend_position = "right", + legend_direction = "vertical", + legend_reverse = TRUE, + ... +) +} +\arguments{ +\item{palette}{Palette name from 'pal_reach()'.} + +\item{discrete}{Boolean indicating whether color aesthetic is discrete or not.} + +\item{reverse}{Boolean indicating whether the palette should be reversed.} + +\item{family}{The font family for all plot's texts. Default to "Leelawadee".} + +\item{text_size}{The size of all text other than the title, subtitle and caption. Defaults to 10.} + +\item{title_size}{The size of the title text_family. Defaults to 14.} + +\item{plot_background_pal}{The color for the plot background color. Default to white.} + +\item{panel_background_pal}{The color for the panel background color. Default to white.} + +\item{legend_position}{Position of the legend; Default to "right". Can take "right", "left", "top", "bottom" or "none".} + +\item{legend_direction}{Direction of the legend. Default to "vertical". Can take "vertical" or "horizontal".} + +\item{legend_reverse}{Reverse the color in the guide? Default to TRUE.} + +\item{...}{Additional arguments passed to `ggblanket::gg_theme()`.} +} +\value{ +The base REACH theme +} +\description{ +Give some reach colors and fonts to a ggplot. +} diff --git a/man/visualizeR-package.Rd b/man/visualizeR-package.Rd deleted file mode 100644 index 25e9400..0000000 --- a/man/visualizeR-package.Rd +++ /dev/null @@ -1,25 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/visualizeR-package.R -\docType{package} -\name{visualizeR-package} -\alias{visualizeR} -\alias{visualizeR-package} -\title{visualizeR: What a color! What a viz!} -\description{ -\if{html}{\figure{logo.png}{options: style='float: right' alt='logo' width='120'}} - -It basically provides colors as hex codes, color palettes, and some viz functions (graphs and maps). -} -\seealso{ -Useful links: -\itemize{ - \item \url{https://github.com/gnoblet/visualizeR} - \item \url{https://gnoblet.github.io/visualizeR/} -} - -} -\author{ -\strong{Maintainer}: Noblet Guillaume \email{gnoblet@zaclys.net} - -} -\keyword{internal} diff --git a/renv.lock b/renv.lock deleted file mode 100644 index 5479592..0000000 --- a/renv.lock +++ /dev/null @@ -1,4788 +0,0 @@ -{ - "R": { - "Version": "4.5.1", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://p3m.dev/cran/latest" - } - ] - }, - "Packages": { - "DT": { - "Package": "DT", - "Version": "0.33", - "Source": "Repository", - "Type": "Package", - "Title": "A Wrapper of the JavaScript Library 'DataTables'", - "Authors@R": "c( person(\"Yihui\", \"Xie\", role = \"aut\"), person(\"Joe\", \"Cheng\", email = \"joe@posit.co\", role = c(\"aut\", \"cre\")), person(\"Xianying\", \"Tan\", role = \"aut\"), person(\"JJ\", \"Allaire\", role = \"ctb\"), person(\"Maximilian\", \"Girlich\", role = \"ctb\"), person(\"Greg\", \"Freedman Ellis\", role = \"ctb\"), person(\"Johannes\", \"Rauh\", role = \"ctb\"), person(\"SpryMedia Limited\", role = c(\"ctb\", \"cph\"), comment = \"DataTables in htmlwidgets/lib\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js in htmlwidgets/lib\"), person(\"Leon\", \"Gersen\", role = c(\"ctb\", \"cph\"), comment = \"noUiSlider in htmlwidgets/lib\"), person(\"Bartek\", \"Szopka\", role = c(\"ctb\", \"cph\"), comment = \"jquery.highlight.js in htmlwidgets/lib\"), person(\"Alex\", \"Pickering\", role = c(\"ctb\")), person(\"William\", \"Holmes\", role = c(\"ctb\")), person(\"Mikko\", \"Marttila\", role = c(\"ctb\")), person(\"Andres\", \"Quintero\", role = c(\"ctb\")), person(\"Stéphane\", \"Laurent\", role = c(\"ctb\")), person(given = \"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Data objects in R can be rendered as HTML tables using the JavaScript library 'DataTables' (typically via R Markdown or Shiny). 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Please use the 'cli' package for new projects. Colored terminal output on terminals that support 'ANSI' color and highlight codes. It also works in 'Emacs' 'ESS'. 'ANSI' color support is automatically detected. Colors and highlighting can be combined and nested. New styles can also be created easily. This package was inspired by the 'chalk' 'JavaScript' project.", - "License": "MIT + file LICENSE", - "URL": "https://r-lib.github.io/crayon/, https://github.com/r-lib/crayon", - "BugReports": "https://github.com/r-lib/crayon/issues", - "Imports": [ - "grDevices", - "methods", - "utils" - ], - "Suggests": [ - "mockery", - "rstudioapi", - "testthat", - "withr" - ], - "Config/Needs/website": "tidyverse/tidytemplate", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "Collate": "'aaa-rstudio-detect.R' 'aaaa-rematch2.R' 'aab-num-ansi-colors.R' 'aac-num-ansi-colors.R' 'ansi-256.R' 'ansi-palette.R' 'combine.R' 'string.R' 'utils.R' 'crayon-package.R' 'disposable.R' 'enc-utils.R' 'has_ansi.R' 'has_color.R' 'link.R' 'styles.R' 'machinery.R' 'parts.R' 'print.R' 'style-var.R' 'show.R' 'string_operations.R'", - "NeedsCompilation": "no", - "Author": "Gábor Csárdi [aut, cre], Brodie Gaslam [ctb], Posit Software, PBC [cph, fnd]", - "Maintainer": "Gábor Csárdi ", - "Repository": "RSPM" - }, - "crosstalk": { - "Package": "crosstalk", - "Version": "1.2.1", - "Source": "Repository", - "Type": "Package", - "Title": "Inter-Widget Interactivity for HTML Widgets", - "Authors@R": "c( person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@posit.co\"), person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@posit.co\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/www/shared/jquery-AUTHORS.txt\"), person(\"Mark\", \"Otto\", role = \"ctb\", comment = \"Bootstrap library\"), person(\"Jacob\", \"Thornton\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Bootstrap contributors\", role = \"ctb\", comment = \"Bootstrap library\"), person(family = \"Twitter, Inc\", role = \"cph\", comment = \"Bootstrap library\"), person(\"Brian\", \"Reavis\", role = c(\"ctb\", \"cph\"), comment = \"selectize.js library\"), person(\"Kristopher Michael\", \"Kowal\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(family = \"es5-shim contributors\", role = c(\"ctb\", \"cph\"), comment = \"es5-shim library\"), person(\"Denis\", \"Ineshin\", role = c(\"ctb\", \"cph\"), comment = \"ion.rangeSlider library\"), person(\"Sami\", \"Samhuri\", role = c(\"ctb\", \"cph\"), comment = \"Javascript strftime library\") )", - "Description": "Provides building blocks for allowing HTML widgets to communicate with each other, with Shiny or without (i.e. static .html files). 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Some knowledge of 'libcurl' is recommended; for a more-user-friendly web client see the 'httr2' package which builds on this package with http specific tools and logic.", - "License": "MIT + file LICENSE", - "SystemRequirements": "libcurl (>= 7.73): libcurl-devel (rpm) or libcurl4-openssl-dev (deb)", - "URL": "https://jeroen.r-universe.dev/curl", - "BugReports": "https://github.com/jeroen/curl/issues", - "Suggests": [ - "spelling", - "testthat (>= 1.0.0)", - "knitr", - "jsonlite", - "later", - "rmarkdown", - "httpuv (>= 1.4.4)", - "webutils" - ], - "VignetteBuilder": "knitr", - "Depends": [ - "R (>= 3.0.0)" - ], - "RoxygenNote": "7.3.2.9000", - "Encoding": "UTF-8", - "Language": "en-US", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Hadley Wickham [ctb], Posit Software, PBC [cph]", - "Maintainer": "Jeroen Ooms ", - "Repository": "RSPM", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_27" - }, - "data.table": { - "Package": "data.table", - "Version": "1.17.6", - "Source": "Repository", - "Title": "Extension of `data.frame`", - "Depends": [ - "R (>= 3.3.0)" - ], - "Imports": [ - "methods" - ], - "Suggests": [ - "bit64 (>= 4.0.0)", - "bit (>= 4.0.4)", - "R.utils", - "xts", - "zoo (>= 1.8-1)", - "yaml", - "knitr", - "markdown" - ], - "Description": "Fast aggregation of large data (e.g. 100GB in RAM), fast ordered joins, fast add/modify/delete of columns by group using no copies at all, list columns, friendly and fast character-separated-value read/write. 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[cph] (libuv subcomponent: inet_pton and inet_ntop, contained in src/libuv/src/inet.c), Alexander Chemeris [cph] (libuv subcomponent: stdint-msvc2008.h (from msinttypes)), Google, Inc. [cph] (libuv subcomponent: pthread-fixes.c), Sony Mobile Communcations AB [cph] (libuv subcomponent: pthread-fixes.c), Berkeley Software Design Inc. [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Kenneth MacKay [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Emergya (Cloud4all, FP7/2007-2013, grant agreement no 289016) [cph] (libuv subcomponent: android-ifaddrs.h, android-ifaddrs.c), Steve Reid [aut] (SHA-1 implementation), James Brown [aut] (SHA-1 implementation), Bob Trower [aut] (base64 implementation), Alexander Peslyak [aut] (MD5 implementation), Trantor Standard Systems [cph] (base64 implementation), Igor Sysoev [cph] (http-parser)", - "Maintainer": "Winston Chang ", - "Repository": "RSPM", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_24" - }, - "httr2": { - "Package": "httr2", - "Version": "1.1.2", - "Source": "Repository", - "Title": "Perform HTTP Requests and Process the Responses", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Maximilian\", \"Girlich\", role = \"ctb\") )", - "Description": "Tools for creating and modifying HTTP requests, then performing them and processing the results. 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Wilke [aut] (Original author, ), Thomas Lin Pedersen [aut] ()", - "Maintainer": "Hadley Wickham ", - "Repository": "RSPM", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_24" - }, - "jpeg": { - "Package": "jpeg", - "Version": "0.1-11", - "Source": "Repository", - "Title": "Read and write JPEG images", - "Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.org, )", - "Authors@R": "person(\"Simon\", \"Urbanek\", role=c(\"aut\",\"cre\",\"cph\"), email=\"Simon.Urbanek@r-project.org\", comment=c(\"https://urbanek.org\", ORCID=\"0000-0003-2297-1732\"))", - "Maintainer": "Simon Urbanek ", - "Depends": [ - "R (>= 2.9.0)" - ], - "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the JPEG format. It can read and write both files and in-memory raw vectors.", - "License": "GPL-2 | GPL-3", - "SystemRequirements": "libjpeg", - "URL": "https://www.rforge.net/jpeg/", - "BugReports": "https://github.com/s-u/jpeg/issues", - "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_17" - }, - "jquerylib": { - "Package": "jquerylib", - "Version": "0.1.4", - "Source": "Repository", - "Title": "Obtain 'jQuery' as an HTML Dependency Object", - "Authors@R": "c( person(\"Carson\", \"Sievert\", role = c(\"aut\", \"cre\"), email = \"carson@rstudio.com\", comment = c(ORCID = \"0000-0002-4958-2844\")), person(\"Joe\", \"Cheng\", role = \"aut\", email = \"joe@rstudio.com\"), person(family = \"RStudio\", role = \"cph\"), person(family = \"jQuery Foundation\", role = \"cph\", comment = \"jQuery library and jQuery UI library\"), person(family = \"jQuery contributors\", role = c(\"ctb\", \"cph\"), comment = \"jQuery library; authors listed in inst/lib/jquery-AUTHORS.txt\") )", - "Description": "Obtain any major version of 'jQuery' () and use it in any webpage generated by 'htmltools' (e.g. 'shiny', 'htmlwidgets', and 'rmarkdown'). 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The function rst2pdf() requires rst2pdf (https://github.com/rst2pdf/rst2pdf).", - "Collate": "'block.R' 'cache.R' 'citation.R' 'hooks-html.R' 'plot.R' 'utils.R' 'defaults.R' 'concordance.R' 'engine.R' 'highlight.R' 'themes.R' 'header.R' 'hooks-asciidoc.R' 'hooks-chunk.R' 'hooks-extra.R' 'hooks-latex.R' 'hooks-md.R' 'hooks-rst.R' 'hooks-textile.R' 'hooks.R' 'output.R' 'package.R' 'pandoc.R' 'params.R' 'parser.R' 'pattern.R' 'rocco.R' 'spin.R' 'table.R' 'template.R' 'utils-conversion.R' 'utils-rd2html.R' 'utils-string.R' 'utils-sweave.R' 'utils-upload.R' 'utils-vignettes.R' 'zzz.R'", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Yihui Xie [aut, cre] (, https://yihui.org), Abhraneel Sarma [ctb], Adam Vogt [ctb], Alastair Andrew [ctb], Alex Zvoleff [ctb], Amar Al-Zubaidi [ctb], Andre Simon [ctb] (the CSS files under inst/themes/ were derived from the Highlight package http://www.andre-simon.de), Aron Atkins [ctb], Aaron Wolen [ctb], Ashley Manton [ctb], Atsushi Yasumoto [ctb] (), Ben Baumer [ctb], Brian Diggs [ctb], Brian Zhang [ctb], Bulat Yapparov [ctb], Cassio Pereira [ctb], Christophe Dervieux [ctb], David Hall [ctb], David Hugh-Jones [ctb], David Robinson [ctb], Doug Hemken [ctb], Duncan Murdoch [ctb], Elio Campitelli [ctb], Ellis Hughes [ctb], Emily Riederer [ctb], Fabian Hirschmann [ctb], Fitch Simeon [ctb], Forest Fang [ctb], Frank E Harrell Jr [ctb] (the Sweavel package at inst/misc/Sweavel.sty), Garrick Aden-Buie [ctb], Gregoire Detrez [ctb], Hadley Wickham [ctb], Hao Zhu [ctb], Heewon Jeon [ctb], Henrik Bengtsson [ctb], Hiroaki Yutani [ctb], Ian Lyttle [ctb], Hodges Daniel [ctb], Jacob Bien [ctb], Jake Burkhead [ctb], James Manton [ctb], Jared Lander [ctb], Jason Punyon [ctb], Javier Luraschi [ctb], Jeff Arnold [ctb], Jenny Bryan [ctb], Jeremy Ashkenas [ctb, cph] (the CSS file at inst/misc/docco-classic.css), Jeremy Stephens [ctb], Jim Hester [ctb], Joe Cheng [ctb], Johannes Ranke [ctb], John Honaker [ctb], John Muschelli [ctb], Jonathan Keane [ctb], JJ Allaire [ctb], Johan Toloe [ctb], Jonathan Sidi [ctb], Joseph Larmarange [ctb], Julien Barnier [ctb], Kaiyin Zhong [ctb], Kamil Slowikowski [ctb], Karl Forner [ctb], Kevin K. 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Supports RSA, DSA and EC curves P-256, P-384, P-521, and curve25519. Cryptographic signatures can either be created and verified manually or via x509 certificates. AES can be used in cbc, ctr or gcm mode for symmetric encryption; RSA for asymmetric (public key) encryption or EC for Diffie Hellman. High-level envelope functions combine RSA and AES for encrypting arbitrary sized data. Other utilities include key generators, hash functions (md5, sha1, sha256, etc), base64 encoder, a secure random number generator, and 'bignum' math methods for manually performing crypto calculations on large multibyte integers.", - "License": "MIT + file LICENSE", - "URL": "https://jeroen.r-universe.dev/openssl", - "BugReports": "https://github.com/jeroen/openssl/issues", - "SystemRequirements": "OpenSSL >= 1.0.2", - "VignetteBuilder": "knitr", - "Imports": [ - "askpass" - ], - "Suggests": [ - "curl", - "testthat (>= 2.1.0)", - "digest", - "knitr", - "rmarkdown", - "jsonlite", - "jose", - "sodium" - ], - "RoxygenNote": "7.3.2", - "Encoding": "UTF-8", - "NeedsCompilation": "yes", - "Author": "Jeroen Ooms [aut, cre] (ORCID: ), Oliver Keyes [ctb]", - "Maintainer": "Jeroen Ooms ", - "Repository": "RSPM", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_17" - }, - "palmerpenguins": { - "Package": "palmerpenguins", - "Version": "0.1.1", - "Source": "Repository", - "Title": "Palmer Archipelago (Antarctica) Penguin Data", - "Date": "2022-08-12", - "Authors@R": "c( person(given = \"Allison\", family = \"Horst\", role = c(\"aut\", \"cre\"), email = \"ahorst@ucsb.edu\", comment = c(ORCID = \"0000-0002-6047-5564\")), person(given = \"Alison\", family = \"Hill\", role = c(\"aut\"), email = \"apresstats@gmail.com\", comment = c(ORCID = \"0000-0002-8082-1890\")), person(given = \"Kristen\", family = \"Gorman\", role = c(\"aut\"), email = \"kbgorman@alaska.edu\", comment = c(ORCID = \"0000-0002-0258-9264\")) )", - "Description": "Size measurements, clutch observations, and blood isotope ratios for adult foraging Adélie, Chinstrap, and Gentoo penguins observed on islands in the Palmer Archipelago near Palmer Station, Antarctica. Data were collected and made available by Dr. Kristen Gorman and the Palmer Station Long Term Ecological Research (LTER) Program.", - "License": "CC0", - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.2.1.9000", - "Depends": [ - "R (>= 2.10)" - ], - "Suggests": [ - "knitr", - "rmarkdown", - "tibble", - "ggplot2", - "dplyr", - "tidyr", - "recipes" - ], - "URL": "https://allisonhorst.github.io/palmerpenguins/, https://github.com/allisonhorst/palmerpenguins", - "BugReports": "https://github.com/allisonhorst/palmerpenguins/issues", - "NeedsCompilation": "no", - "Author": "Allison Horst [aut, cre] (), Alison Hill [aut] (), Kristen Gorman [aut] ()", - "Maintainer": "Allison Horst ", - "Repository": "CRAN" - }, - "pillar": { - "Package": "pillar", - "Version": "1.10.2", - "Source": "Repository", - "Title": "Coloured Formatting for Columns", - "Authors@R": "c(person(given = \"Kirill\", family = \"M\\u00fcller\", role = c(\"aut\", \"cre\"), email = \"kirill@cynkra.com\", comment = c(ORCID = \"0000-0002-1416-3412\")), person(given = \"Hadley\", family = \"Wickham\", role = \"aut\"), person(given = \"RStudio\", role = \"cph\"))", - "Description": "Provides 'pillar' and 'colonnade' generics designed for formatting columns of data using the full range of colours provided by modern terminals.", - "License": "MIT + file LICENSE", - "URL": "https://pillar.r-lib.org/, https://github.com/r-lib/pillar", - "BugReports": "https://github.com/r-lib/pillar/issues", - "Imports": [ - "cli (>= 2.3.0)", - "glue", - "lifecycle", - "rlang (>= 1.0.2)", - "utf8 (>= 1.1.0)", - "utils", - "vctrs (>= 0.5.0)" - ], - "Suggests": [ - "bit64", - "DBI", - "debugme", - "DiagrammeR", - "dplyr", - "formattable", - "ggplot2", - "knitr", - "lubridate", - "nanotime", - "nycflights13", - "palmerpenguins", - "rmarkdown", - "scales", - "stringi", - "survival", - "testthat (>= 3.1.1)", - "tibble", - "units (>= 0.7.2)", - "vdiffr", - "withr" - ], - "VignetteBuilder": "knitr", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2.9000", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Config/testthat/start-first": "format_multi_fuzz, format_multi_fuzz_2, format_multi, ctl_colonnade, ctl_colonnade_1, ctl_colonnade_2", - "Config/autostyle/scope": "line_breaks", - "Config/autostyle/strict": "true", - "Config/gha/extra-packages": "units=?ignore-before-r=4.3.0", - "Config/Needs/website": "tidyverse/tidytemplate", - "NeedsCompilation": "no", - "Author": "Kirill Müller [aut, cre] (), Hadley Wickham [aut], RStudio [cph]", - "Maintainer": "Kirill Müller ", - "Repository": "RSPM" - }, - "pkgbuild": { - "Package": "pkgbuild", - "Version": "1.4.8", - "Source": "Repository", - "Title": "Find Tools Needed to Build R Packages", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Provides functions used to build R packages. Locates compilers needed to build R packages on various platforms and ensures the PATH is configured appropriately so R can use them.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/pkgbuild, https://pkgbuild.r-lib.org", - "BugReports": "https://github.com/r-lib/pkgbuild/issues", - "Depends": [ - "R (>= 3.5)" - ], - "Imports": [ - "callr (>= 3.2.0)", - "cli (>= 3.4.0)", - "desc", - "processx", - "R6" - ], - "Suggests": [ - "covr", - "cpp11", - "knitr", - "Rcpp", - "rmarkdown", - "testthat (>= 3.2.0)", - "withr (>= 2.3.0)" - ], - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Config/usethis/last-upkeep": "2025-04-30", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Gábor Csárdi [aut, cre], Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Gábor Csárdi ", - "Repository": "RSPM" - }, - "pkgconfig": { - "Package": "pkgconfig", - "Version": "2.0.3", - "Source": "Repository", - "Title": "Private Configuration for 'R' Packages", - "Author": "Gábor Csárdi", - "Maintainer": "Gábor Csárdi ", - "Description": "Set configuration options on a per-package basis. Options set by a given package only apply to that package, other packages are unaffected.", - "License": "MIT + file LICENSE", - "LazyData": "true", - "Imports": [ - "utils" - ], - "Suggests": [ - "covr", - "testthat", - "disposables (>= 1.0.3)" - ], - "URL": "https://github.com/r-lib/pkgconfig#readme", - "BugReports": "https://github.com/r-lib/pkgconfig/issues", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Repository": "RSPM" - }, - "pkgdown": { - "Package": "pkgdown", - "Version": "2.1.3", - "Source": "Repository", - "Title": "Make Static HTML Documentation for a Package", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jay\", \"Hesselberth\", role = \"aut\", comment = c(ORCID = \"0000-0002-6299-179X\")), person(\"Maëlle\", \"Salmon\", role = \"aut\", comment = c(ORCID = \"0000-0002-2815-0399\")), person(\"Olivier\", \"Roy\", role = \"aut\"), person(\"Salim\", \"Brüggemann\", role = \"aut\", comment = c(ORCID = \"0000-0002-5329-5987\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\"), comment = c(ROR = \"03wc8by49\")) )", - "Description": "Generate an attractive and useful website from a source package. 'pkgdown' converts your documentation, vignettes, 'README', and more to 'HTML' making it easy to share information about your package online.", - "License": "MIT + file LICENSE", - "URL": "https://pkgdown.r-lib.org/, https://github.com/r-lib/pkgdown", - "BugReports": "https://github.com/r-lib/pkgdown/issues", - "Depends": [ - "R (>= 4.0.0)" - ], - "Imports": [ - "bslib (>= 0.5.1)", - "callr (>= 3.7.3)", - "cli (>= 3.6.1)", - "desc (>= 1.4.0)", - "downlit (>= 0.4.4)", - "fontawesome", - "fs (>= 1.4.0)", - "httr2 (>= 1.0.2)", - "jsonlite", - "openssl", - "purrr (>= 1.0.0)", - "ragg (>= 1.4.0)", - "rlang (>= 1.1.4)", - "rmarkdown (>= 2.27)", - "tibble", - "whisker", - "withr (>= 2.4.3)", - "xml2 (>= 1.3.1)", - "yaml" - ], - "Suggests": [ - "covr", - "diffviewer", - "evaluate (>= 0.24.0)", - "gert", - "gt", - "htmltools", - "htmlwidgets", - "knitr (>= 1.50)", - "lifecycle", - "magick", - "methods", - "pkgload (>= 1.0.2)", - "quarto", - "rsconnect", - "rstudioapi", - "rticles", - "sass", - "testthat (>= 3.1.3)", - "tools" - ], - "VignetteBuilder": "knitr, quarto", - "Config/Needs/website": "usethis, servr", - "Config/potools/style": "explicit", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "true", - "Config/testthat/start-first": "build-article, build-quarto-article, build-reference", - "Encoding": "UTF-8", - "SystemRequirements": "pandoc", - "RoxygenNote": "7.3.2", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut, cre] (ORCID: ), Jay Hesselberth [aut] (ORCID: ), Maëlle Salmon [aut] (ORCID: ), Olivier Roy [aut], Salim Brüggemann [aut] (ORCID: ), Posit Software, PBC [cph, fnd] (ROR: )", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN" - }, - "pkgload": { - "Package": "pkgload", - "Version": "1.4.0", - "Source": "Repository", - "Title": "Simulate Package Installation and Attach", - "Authors@R": "c( person(\"Hadley\", \"Wickham\", role = \"aut\"), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\"), person(\"Lionel\", \"Henry\", , \"lionel@posit.co\", role = c(\"aut\", \"cre\")), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"R Core team\", role = \"ctb\", comment = \"Some namespace and vignette code extracted from base R\") )", - "Description": "Simulates the process of installing a package and then attaching it. This is a key part of the 'devtools' package as it allows you to rapidly iterate while developing a package.", - "License": "GPL-3", - "URL": "https://github.com/r-lib/pkgload, https://pkgload.r-lib.org", - "BugReports": "https://github.com/r-lib/pkgload/issues", - "Depends": [ - "R (>= 3.4.0)" - ], - "Imports": [ - "cli (>= 3.3.0)", - "desc", - "fs", - "glue", - "lifecycle", - "methods", - "pkgbuild", - "processx", - "rlang (>= 1.1.1)", - "rprojroot", - "utils", - "withr (>= 2.4.3)" - ], - "Suggests": [ - "bitops", - "jsonlite", - "mathjaxr", - "pak", - "Rcpp", - "remotes", - "rstudioapi", - "testthat (>= 3.2.1.1)", - "usethis" - ], - "Config/Needs/website": "tidyverse/tidytemplate, ggplot2", - "Config/testthat/edition": "3", - "Config/testthat/parallel": "TRUE", - "Config/testthat/start-first": "dll", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1", - "NeedsCompilation": "no", - "Author": "Hadley Wickham [aut], Winston Chang [aut], Jim Hester [aut], Lionel Henry [aut, cre], Posit Software, PBC [cph, fnd], R Core team [ctb] (Some namespace and vignette code extracted from base R)", - "Maintainer": "Lionel Henry ", - "Repository": "RSPM" - }, - "plyr": { - "Package": "plyr", - "Version": "1.8.9", - "Source": "Repository", - "Title": "Tools for Splitting, Applying and Combining Data", - "Authors@R": "person(\"Hadley\", \"Wickham\", , \"hadley@rstudio.com\", role = c(\"aut\", \"cre\"))", - "Description": "A set of tools that solves a common set of problems: you need to break a big problem down into manageable pieces, operate on each piece and then put all the pieces back together. For example, you might want to fit a model to each spatial location or time point in your study, summarise data by panels or collapse high-dimensional arrays to simpler summary statistics. The development of 'plyr' has been generously supported by 'Becton Dickinson'.", - "License": "MIT + file LICENSE", - "URL": "http://had.co.nz/plyr, https://github.com/hadley/plyr", - "BugReports": "https://github.com/hadley/plyr/issues", - "Depends": [ - "R (>= 3.1.0)" - ], - "Imports": [ - "Rcpp (>= 0.11.0)" - ], - "Suggests": [ - "abind", - "covr", - "doParallel", - "foreach", - "iterators", - "itertools", - "tcltk", - "testthat" - ], - "LinkingTo": [ - "Rcpp" - ], - "Encoding": "UTF-8", - "LazyData": "true", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut, cre]", - "Maintainer": "Hadley Wickham ", - "Repository": "CRAN", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_24" - }, - "png": { - "Package": "png", - "Version": "0.1-8", - "Source": "Repository", - "Title": "Read and write PNG images", - "Author": "Simon Urbanek ", - "Maintainer": "Simon Urbanek ", - "Depends": [ - "R (>= 2.9.0)" - ], - "Description": "This package provides an easy and simple way to read, write and display bitmap images stored in the PNG format. It can read and write both files and in-memory raw vectors.", - "License": "GPL-2 | GPL-3", - "SystemRequirements": "libpng", - "URL": "http://www.rforge.net/png/", - "NeedsCompilation": "yes", - "Repository": "CRAN", - "Encoding": "UTF-8", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_27" - }, - "praise": { - "Package": "praise", - "Version": "1.0.0", - "Source": "Repository", - "Title": "Praise Users", - "Author": "Gabor Csardi, Sindre Sorhus", - "Maintainer": "Gabor Csardi ", - "Description": "Build friendly R packages that praise their users if they have done something good, or they just need it to feel better.", - "License": "MIT + file LICENSE", - "LazyData": "true", - "URL": "https://github.com/gaborcsardi/praise", - "BugReports": "https://github.com/gaborcsardi/praise/issues", - "Suggests": [ - "testthat" - ], - "Collate": "'adjective.R' 'adverb.R' 'exclamation.R' 'verb.R' 'rpackage.R' 'package.R'", - "NeedsCompilation": "no", - "Repository": "RSPM", - "Encoding": "UTF-8" - }, - "prettyunits": { - "Package": "prettyunits", - "Version": "1.2.0", - "Source": "Repository", - "Title": "Pretty, Human Readable Formatting of Quantities", - "Authors@R": "c( person(\"Gabor\", \"Csardi\", email=\"csardi.gabor@gmail.com\", role=c(\"aut\", \"cre\")), person(\"Bill\", \"Denney\", email=\"wdenney@humanpredictions.com\", role=c(\"ctb\"), comment=c(ORCID=\"0000-0002-5759-428X\")), person(\"Christophe\", \"Regouby\", email=\"christophe.regouby@free.fr\", role=c(\"ctb\")) )", - "Description": "Pretty, human readable formatting of quantities. Time intervals: '1337000' -> '15d 11h 23m 20s'. Vague time intervals: '2674000' -> 'about a month ago'. Bytes: '1337' -> '1.34 kB'. Rounding: '99' with 3 significant digits -> '99.0' p-values: '0.00001' -> '<0.0001'. Colors: '#FF0000' -> 'red'. Quantities: '1239437' -> '1.24 M'.", - "License": "MIT + file LICENSE", - "URL": "https://github.com/r-lib/prettyunits", - "BugReports": "https://github.com/r-lib/prettyunits/issues", - "Depends": [ - "R(>= 2.10)" - ], - "Suggests": [ - "codetools", - "covr", - "testthat" - ], - "RoxygenNote": "7.2.3", - "Encoding": "UTF-8", - "NeedsCompilation": "no", - "Author": "Gabor Csardi [aut, cre], Bill Denney [ctb] (), Christophe Regouby [ctb]", - "Maintainer": "Gabor Csardi ", - "Repository": "RSPM" - }, - "processx": { - "Package": "processx", - "Version": "3.8.6", - "Source": "Repository", - "Title": "Execute and Control System Processes", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\", \"cph\"), comment = c(ORCID = \"0000-0001-7098-9676\")), person(\"Winston\", \"Chang\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")), person(\"Ascent Digital Services\", role = c(\"cph\", \"fnd\")) )", - "Description": "Tools to run system processes in the background. It can check if a background process is running; wait on a background process to finish; get the exit status of finished processes; kill background processes. It can read the standard output and error of the processes, using non-blocking connections. 'processx' can poll a process for standard output or error, with a timeout. It can also poll several processes at once.", - "License": "MIT + file LICENSE", - "URL": "https://processx.r-lib.org, https://github.com/r-lib/processx", - "BugReports": "https://github.com/r-lib/processx/issues", - "Depends": [ - "R (>= 3.4.0)" - ], - "Imports": [ - "ps (>= 1.2.0)", - "R6", - "utils" - ], - "Suggests": [ - "callr (>= 3.7.3)", - "cli (>= 3.3.0)", - "codetools", - "covr", - "curl", - "debugme", - "parallel", - "rlang (>= 1.0.2)", - "testthat (>= 3.0.0)", - "webfakes", - "withr" - ], - "Config/Needs/website": "tidyverse/tidytemplate", - "Config/testthat/edition": "3", - "Encoding": "UTF-8", - "RoxygenNote": "7.3.1.9000", - "NeedsCompilation": "yes", - "Author": "Gábor Csárdi [aut, cre, cph] (), Winston Chang [aut], Posit Software, PBC [cph, fnd], Ascent Digital Services [cph, fnd]", - "Maintainer": "Gábor Csárdi ", - "Repository": "RSPM", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_17" - }, - "progress": { - "Package": "progress", - "Version": "1.2.3", - "Source": "Repository", - "Title": "Terminal Progress Bars", - "Authors@R": "c( person(\"Gábor\", \"Csárdi\", , \"csardi.gabor@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Rich\", \"FitzJohn\", role = \"aut\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "Configurable Progress bars, they may include percentage, elapsed time, and/or the estimated completion time. They work in terminals, in 'Emacs' 'ESS', 'RStudio', 'Windows' 'Rgui' and the 'macOS' 'R.app'. 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This is the 'lite' version of the 'viridis' package that also contains 'ggplot2' bindings for discrete and continuous color and fill scales and can be found at .", - "License": "MIT + file LICENSE", - "Encoding": "UTF-8", - "Depends": [ - "R (>= 2.10)" - ], - "Suggests": [ - "hexbin (>= 1.27.0)", - "ggplot2 (>= 1.0.1)", - "testthat", - "covr" - ], - "URL": "https://sjmgarnier.github.io/viridisLite/, https://github.com/sjmgarnier/viridisLite/", - "BugReports": "https://github.com/sjmgarnier/viridisLite/issues/", - "RoxygenNote": "7.2.3", - "NeedsCompilation": "no", - "Author": "Simon Garnier [aut, cre], Noam Ross [ctb, cph], Bob Rudis [ctb, cph], Marco Sciaini [ctb, cph], Antônio Pedro Camargo [ctb, cph], Cédric Scherer [ctb, cph]", - "Repository": "RSPM" - }, - "vroom": { - "Package": "vroom", - "Version": "1.6.5", - "Source": "Repository", - "Title": "Read and Write Rectangular Text Data Quickly", - "Authors@R": "c( person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = \"aut\", comment = c(ORCID = \"0000-0003-4757-117X\")), person(\"Jennifer\", \"Bryan\", , \"jenny@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0002-6983-2759\")), person(\"Shelby\", \"Bearrows\", role = \"ctb\"), person(\"https://github.com/mandreyel/\", role = \"cph\", comment = \"mio library\"), person(\"Jukka\", \"Jylänki\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Mikkel\", \"Jørgensen\", role = \"cph\", comment = \"grisu3 implementation\"), person(\"Posit Software, PBC\", role = c(\"cph\", \"fnd\")) )", - "Description": "The goal of 'vroom' is to read and write data (like 'csv', 'tsv' and 'fwf') quickly. 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Also supports XML schema validation; for 'XSLT' transformations see the 'xslt' package.", - "License": "MIT + file LICENSE", - "URL": "https://xml2.r-lib.org, https://r-lib.r-universe.dev/xml2", - "BugReports": "https://github.com/r-lib/xml2/issues", - "Depends": [ - "R (>= 3.6.0)" - ], - "Imports": [ - "cli", - "methods", - "rlang (>= 1.1.0)" - ], - "Suggests": [ - "covr", - "curl", - "httr", - "knitr", - "magrittr", - "mockery", - "rmarkdown", - "testthat (>= 3.2.0)", - "xslt" - ], - "VignetteBuilder": "knitr", - "Config/Needs/website": "tidyverse/tidytemplate", - "Encoding": "UTF-8", - "RoxygenNote": "7.2.3", - "SystemRequirements": "libxml2: libxml2-dev (deb), libxml2-devel (rpm)", - "Collate": "'S4.R' 'as_list.R' 'xml_parse.R' 'as_xml_document.R' 'classes.R' 'format.R' 'import-standalone-obj-type.R' 'import-standalone-purrr.R' 'import-standalone-types-check.R' 'init.R' 'nodeset_apply.R' 'paths.R' 'utils.R' 'xml2-package.R' 'xml_attr.R' 'xml_children.R' 'xml_document.R' 'xml_find.R' 'xml_missing.R' 'xml_modify.R' 'xml_name.R' 'xml_namespaces.R' 'xml_node.R' 'xml_nodeset.R' 'xml_path.R' 'xml_schema.R' 'xml_serialize.R' 'xml_structure.R' 'xml_text.R' 'xml_type.R' 'xml_url.R' 'xml_write.R' 'zzz.R'", - "Config/testthat/edition": "3", - "NeedsCompilation": "yes", - "Author": "Hadley Wickham [aut], Jim Hester [aut], Jeroen Ooms [aut, cre], Posit Software, PBC [cph, fnd], R Foundation [ctb] (Copy of R-project homepage cached as example)", - "Maintainer": "Jeroen Ooms ", - "Repository": "RSPM", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_28" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.10", - "Source": "Repository", - "Type": "Package", - "Title": "Methods to Convert R Data to YAML and Back", - "Date": "2024-07-22", - "Suggests": [ - "RUnit" - ], - "Author": "Shawn P Garbett [aut], Jeremy Stephens [aut, cre], Kirill Simonov [aut], Yihui Xie [ctb], Zhuoer Dong [ctb], Hadley Wickham [ctb], Jeffrey Horner [ctb], reikoch [ctb], Will Beasley [ctb], Brendan O'Connor [ctb], Gregory R. Warnes [ctb], Michael Quinn [ctb], Zhian N. Kamvar [ctb], Charlie Gao [ctb]", - "Maintainer": "Shawn Garbett ", - "License": "BSD_3_clause + file LICENSE", - "Description": "Implements the 'libyaml' 'YAML' 1.1 parser and emitter () for R.", - "URL": "https://github.com/vubiostat/r-yaml/", - "BugReports": "https://github.com/vubiostat/r-yaml/issues", - "NeedsCompilation": "yes", - "Repository": "RSPM", - "Encoding": "UTF-8", - "Platform": "x86_64-pc-linux-gnu-manylinux_2_17" - } - } -} diff --git a/renv/.gitignore b/renv/.gitignore deleted file mode 100644 index 0ec0cbb..0000000 --- a/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ diff --git a/renv/activate.R b/renv/activate.R deleted file mode 100644 index 90b251c..0000000 --- a/renv/activate.R +++ /dev/null @@ -1,1334 +0,0 @@ - -local({ - - # the requested version of renv - version <- "1.1.4" - attr(version, "sha") <- NULL - - # the project directory - project <- Sys.getenv("RENV_PROJECT") - if (!nzchar(project)) - project <- getwd() - - # use start-up diagnostics if enabled - diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") - if (diagnostics) { - start <- Sys.time() - profile <- tempfile("renv-startup-", fileext = ".Rprof") - utils::Rprof(profile) - on.exit({ - utils::Rprof(NULL) - elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) - writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) - writeLines(sprintf("- Profile: %s", profile)) - print(utils::summaryRprof(profile)) - }, add = TRUE) - } - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # if we're being run in a context where R_LIBS is already set, - # don't load -- presumably we're being run as a sub-process and - # the parent process has already set up library paths for us - rcmd <- Sys.getenv("R_CMD", unset = NA) - rlibs <- Sys.getenv("R_LIBS", unset = NA) - if (!is.na(rlibs) && !is.na(rcmd)) - return(FALSE) - - # next, check environment variables - # prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - # bail if we're not enabled - if (!enabled) { - - # if we're not enabled, we might still need to manually load - # the user profile here - profile <- Sys.getenv("R_PROFILE_USER", unset = "~/.Rprofile") - if (file.exists(profile)) { - cfg <- Sys.getenv("RENV_CONFIG_USER_PROFILE", unset = "TRUE") - if (tolower(cfg) %in% c("true", "t", "1")) - sys.source(profile, envir = globalenv()) - } - - return(FALSE) - - } - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - ansify <- function(text) { - if (renv_ansify_enabled()) - renv_ansify_enhanced(text) - else - renv_ansify_default(text) - } - - renv_ansify_enabled <- function() { - - override <- Sys.getenv("RENV_ANSIFY_ENABLED", unset = NA) - if (!is.na(override)) - return(as.logical(override)) - - pane <- Sys.getenv("RSTUDIO_CHILD_PROCESS_PANE", unset = NA) - if (identical(pane, "build")) - return(FALSE) - - testthat <- Sys.getenv("TESTTHAT", unset = "false") - if (tolower(testthat) %in% "true") - return(FALSE) - - iderun <- Sys.getenv("R_CLI_HAS_HYPERLINK_IDE_RUN", unset = "false") - if (tolower(iderun) %in% "false") - return(FALSE) - - TRUE - - } - - renv_ansify_default <- function(text) { - text - } - - renv_ansify_enhanced <- function(text) { - - # R help links - pattern <- "`\\?(renv::(?:[^`])+)`" - replacement <- "`\033]8;;x-r-help:\\1\a?\\1\033]8;;\a`" - text <- gsub(pattern, replacement, text, perl = TRUE) - - # runnable code - pattern <- "`(renv::(?:[^`])+)`" - replacement <- "`\033]8;;x-r-run:\\1\a\\1\033]8;;\a`" - text <- gsub(pattern, replacement, text, perl = TRUE) - - # return ansified text - text - - } - - renv_ansify_init <- function() { - - envir <- renv_envir_self() - if (renv_ansify_enabled()) - assign("ansify", renv_ansify_enhanced, envir = envir) - else - assign("ansify", renv_ansify_default, envir = envir) - - } - - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - heredoc <- function(text, leave = 0) { - - # remove leading, trailing whitespace - trimmed <- gsub("^\\s*\\n|\\n\\s*$", "", text) - - # split into lines - lines <- strsplit(trimmed, "\n", fixed = TRUE)[[1L]] - - # compute common indent - indent <- regexpr("[^[:space:]]", lines) - common <- min(setdiff(indent, -1L)) - leave - text <- paste(substring(lines, common), collapse = "\n") - - # substitute in ANSI links for executable renv code - ansify(text) - - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) { - headers <- renv_bootstrap_download_custom_headers(url) - if (length(headers) && is.character(headers)) - args$headers <- headers - } - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # build arguments for utils::available.packages() call - args <- list(type = type, repos = repos) - - # add custom headers if available -- note that - # utils::available.packages() will pass this to download.file() - if ("headers" %in% names(formals(utils::download.file))) { - headers <- renv_bootstrap_download_custom_headers(repos) - if (length(headers) && is.character(headers)) - args$headers <- headers - } - - # retrieve package database - db <- tryCatch( - as.data.frame( - do.call(utils::available.packages, args), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_github_token <- function() { - for (envvar in c("GITHUB_TOKEN", "GITHUB_PAT", "GH_TOKEN")) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(envval) - } - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - token <- renv_bootstrap_github_token() - if (is.null(token)) - token <- "" - - if (nzchar(Sys.which("curl")) && nzchar(token)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, token) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(token)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, token) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a 'gzip' magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix_default <- function() { - - # read version component - version <- Sys.getenv("RENV_PATHS_VERSION", unset = "R-%v") - - # expand placeholders - placeholders <- list( - list("%v", format(getRversion()[1, 1:2])), - list("%V", format(getRversion()[1, 1:3])) - ) - - for (placeholder in placeholders) - version <- gsub(placeholder[[1L]], placeholder[[2L]], version, fixed = TRUE) - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - version <- paste(version, R.version[["svn rev"]], sep = "-r") - - version - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- renv_bootstrap_platform_prefix_default() - - # build list of path components - components <- c(version, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (is.na(auto) && getRversion() >= "4.4.0") - auto <- "TRUE" - - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - # - # avoid passing lib.loc to `packageDescription()` below, since R will - # use the loaded version of the package by default anyhow. note that - # this function should only be called after 'renv' is loaded - # https://github.com/rstudio/renv/issues/1625 - description <- description %||% packageDescription("renv") - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - dev <- identical(description[["RemoteType"]], "github") - remote <- if (dev) - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - else - paste("renv", description[["Version"]], sep = "@") - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = if (dev) description[["RemoteSha"]] - ) - - fmt <- heredoc(" - renv %1$s was loaded from project library, but this project is configured to use renv %2$s. - - Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile. - - Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library. - ") - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - - expected <- description[["RemoteSha"]] - if (!is.character(expected)) - return(FALSE) - - pattern <- sprintf("^\\Q%s\\E", version) - grepl(pattern, expected, perl = TRUE) - - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warnify) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = "") - } - - renv_bootstrap_exec <- function(project, libpath, version) { - if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(project, libpath, version) - } - - renv_bootstrap_run <- function(project, libpath, version) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = project)) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- tryCatch(renv_json_read_jsonlite(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- tryCatch(renv_json_read_default(file, text), error = identity) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_patterns <- function() { - - list( - - # objects - list("{", "\t\n\tobject(\t\n\t", TRUE), - list("}", "\t\n\t)\t\n\t", TRUE), - - # arrays - list("[", "\t\n\tarray(\t\n\t", TRUE), - list("]", "\n\t\n)\n\t\n", TRUE), - - # maps - list(":", "\t\n\t=\t\n\t", TRUE), - - # newlines - list("\\u000a", "\n", FALSE) - - ) - - } - - renv_json_read_envir <- function() { - - envir <- new.env(parent = emptyenv()) - - envir[["+"]] <- `+` - envir[["-"]] <- `-` - - envir[["object"]] <- function(...) { - result <- list(...) - names(result) <- as.character(names(result)) - result - } - - envir[["array"]] <- list - - envir[["true"]] <- TRUE - envir[["false"]] <- FALSE - envir[["null"]] <- NULL - - envir - - } - - renv_json_read_remap <- function(object, patterns) { - - # repair names if necessary - if (!is.null(names(object))) { - - nms <- names(object) - for (pattern in patterns) - nms <- gsub(pattern[[2L]], pattern[[1L]], nms, fixed = TRUE) - names(object) <- nms - - } - - # repair strings if necessary - if (is.character(object)) { - for (pattern in patterns) - object <- gsub(pattern[[2L]], pattern[[1L]], object, fixed = TRUE) - } - - # recurse for other objects - if (is.recursive(object)) - for (i in seq_along(object)) - object[i] <- list(renv_json_read_remap(object[[i]], patterns)) - - # return remapped object - object - - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # read json text - text <- paste(text %||% readLines(file, warn = FALSE), collapse = "\n") - - # convert into something the R parser will understand - patterns <- renv_json_read_patterns() - transformed <- text - for (pattern in patterns) - transformed <- gsub(pattern[[1L]], pattern[[2L]], transformed, fixed = TRUE) - - # parse it - rfile <- tempfile("renv-json-", fileext = ".R") - on.exit(unlink(rfile), add = TRUE) - writeLines(transformed, con = rfile) - json <- parse(rfile, keep.source = FALSE, srcfile = NULL)[[1L]] - - # evaluate in safe environment - result <- eval(json, envir = renv_json_read_envir()) - - # fix up strings if necessary -- do so only with reversible patterns - patterns <- Filter(function(pattern) pattern[[3L]], patterns) - renv_json_read_remap(result, patterns) - - } - - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - # run bootstrap code - renv_bootstrap_exec(project, libpath, version) - - invisible() - -}) diff --git a/renv/settings.json b/renv/settings.json deleted file mode 100644 index ffdbb32..0000000 --- a/renv/settings.json +++ /dev/null @@ -1,19 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "implicit", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -} diff --git a/test-example.R b/test-example.R deleted file mode 100644 index c917a9a..0000000 --- a/test-example.R +++ /dev/null @@ -1,97 +0,0 @@ -# dat <- data.frame( -# x = c(15, 34, 59, 21, 33, 66), -# y = c("Admin A", "Admin B", "Admin C", "Admin C", "Admin B", "Admin A"), -# group = c("Displaced", "Non displaced", "Non displaced", "Displaced", "Displaced", "Non displaced") -# ) - - -library(visualizeR) - -# dat |> -# bar( -# x = "y", -# y = "x", -# #group = "group", -# group_title = "Displacement Status", -# flip = T, -# add_text = T, -# title = "In Admin A and C, Non-Displaced Persons Face Greater WASH Challenges Than Their Displaced Counterparts", -# subtitle = "% of households not accessing WASH services by admin 1 and displacement status", -# caption = "Source: FAO 2022. No message is a real one. Fake data are used in this example. As a cautiom, no decision should be made based on this plot.", -# ) + -# theme_bar(flip = T, add_text = T) + -# scale_color_visualizer_discrete() + -# scale_fill_visualizer_discrete() - - -library(rio) -dat <- import("https://raw.githubusercontent.com/holtzy/data_to_viz/master/Example_dataset/11_SevCatOneNumNestedOneObsPerGroup.csv") - -dumbbell( - df, - "stat", - "setting", - "admin1", - title = "% of HHs that reported open defecation as sanitation facility", - group_y_title = "Admin 1", - group_x_title = "Setting" -) - -library(dplyr) -library(data.table) -# dat as a data.table if it4s not -if (!checkmate::test_data_table(dat)) { - rlang::warn("Converting dat to data.table.") - data.table::setDT(dat) -} - -# in all character columns, tranform empty string to NA -vars_chr <- colnames(dat)[sapply(dat, is.character)] -dat[, (vars_chr) := lapply(.SD, function(x) fifelse(x == "", NA_character_, x)), .SDcols = vars_chr] - -# in value, if -1 replace with NA -dat[, value := fifelse(value == -1, NA_real_, value)] - -# remove lines where value is NA (in place) -dat <- dat[!is.na(value), ] - -dat - # arrange(value) |> - # group_by(region) |> - # mutate(key = forcats::fct_reorder(key, value)) |> - - - -dumbbell( - dat |> arrange(value) |> tail(50) |> mutate( - value = value/1000000, - key = ifelse(key == "Democratic Republic of the Congo", "DRC", key)) |> - filter(region %in% c("Europe", "Americas")), - "value", - "region", - "key", - title = "% of HHs that reported open defecation as sanitation facility", - group_y_title = "Admin 1", - group_x_title = "Setting", point_size = 3, line_to_y_axis = T - -) - - -bar( - df = dat |> arrange(value) |> tail(20) |> mutate( - value = value/1000000, - key = ifelse(key == "Democratic Republic of the Congo", "DRC", key)), - x = "key", - y = "value", - group = "region", - group_title = "Region", - order = "grouped", - x_rm_na = T, - y_rm_na = T, - group_rm_na = T, - flip = F, - title = "Population of Global Regions in Million", -) + -theme_bar(flip = F, axis_text_x_angle = 45) + -scale_color_visualizer_discrete() + -scale_fill_visualizer_discrete() diff --git a/test.R b/test.R deleted file mode 100644 index aa7a869..0000000 --- a/test.R +++ /dev/null @@ -1,22 +0,0 @@ -library(visualizeR) -library(ggplot2) - -# Example usagea -# Sample data -data <- data.frame( - category = c("A", "B", "C", "D"), - value = c(3, 7, 9, 5) -) - -library(visualizeR) -library(ggplot2) -# Regular bar plot -p1 <- - bar( - df = data, - x = "category", - y = "value", - flip = F - ) + - theme_bar(flip = F) -p1 diff --git a/tests/testthat.R b/tests/testthat.R deleted file mode 100644 index ffac804..0000000 --- a/tests/testthat.R +++ /dev/null @@ -1,12 +0,0 @@ -# This file is part of the standard setup for testthat. -# It is recommended that you do not modify it. -# -# Where should you do additional test configuration? -# Learn more about the roles of various files in: -# * https://r-pkgs.org/testing-design.html#sec-tests-files-overview -# * https://testthat.r-lib.org/articles/special-files.html - -library(testthat) -library(visualizeR) - -test_check("visualizeR") diff --git a/tests/testthat/test-color.R b/tests/testthat/test-color.R deleted file mode 100644 index ee09eea..0000000 --- a/tests/testthat/test-color.R +++ /dev/null @@ -1,86 +0,0 @@ -# Tests for color functions - -test_that("color returns expected hex codes", { - # Test default behavior (returning all colors when no args provided) - all_colors <- color(unname = FALSE) - expect_type(all_colors, "character") - expect_true(length(all_colors) > 0) - expect_named(all_colors) - - # Test requesting specific colors - expect_identical(color("white"), "#FFFFFF") - expect_identical(color("black"), "#000000") - - # Test requesting multiple colors - expect_identical( - color("white", "black"), - c("#FFFFFF", "#000000") - ) - - # Test requesting multiple colors with names preserved - named_colors <- color("white", "black", unname = FALSE) - expect_identical( - named_colors, - c(white = "#FFFFFF", black = "#000000") - ) - - # Test requesting non-existent color - expect_error( - color("nonexistent_color"), - "Some colors not defined" - ) -}) - -test_that("color_pattern works as expected", { - # Positive test cases - cat_colors <- color_pattern("cat_", unname = FALSE) - expect_true(length(cat_colors) > 0) - expect_true(all(startsWith(names(cat_colors), "cat_"))) - - seq_colors <- color_pattern("seq_") - expect_true(length(seq_colors) > 0) - - # Test with a pattern that should match nothing - expect_warning( - color_pattern("xyz_nonexistent_"), - "No colors match the pattern" - ) - - # Test argument validation - expect_error(color_pattern(123)) - expect_error(color_pattern(c("cat_", "seq_"))) - expect_error( - color_pattern("cat_", unname = "yes"), - "Assertion on 'unname' failed" - ) -}) - -test_that("color function parameter validation", { - # Empty call should return all colors - all_colors <- color() - expect_type(all_colors, "character") - expect_true(length(all_colors) > 0) - - # unname parameter behavior - named_all <- color(unname = FALSE) - expect_named(named_all) - unnamed_all <- color(unname = TRUE) - expect_null(names(unnamed_all)) - - # Test validation of ... arguments to ensure they're strings - expect_error(color(123), "Assertion on 'Argument #1' failed") - expect_error(color(TRUE), "Assertion on 'Argument #1' failed") - expect_error( - color(list("white")), - "Assertion on 'Argument #1' failed" - ) - - # Test that vectors are not allowed - expect_error( - color(c("white", "black")), - "Assertion on 'Argument #1' failed: Must have length 1." - ) - - # Multiple arguments should still work as long as each is a single string - expect_length(color("white", "black"), 2) -}) diff --git a/tests/testthat/test-lollipop.R b/tests/testthat/test-lollipop.R deleted file mode 100644 index 70fd05f..0000000 --- a/tests/testthat/test-lollipop.R +++ /dev/null @@ -1,245 +0,0 @@ -test_that("lollipop generates correct base plot structure", { - test_data <- data.frame( - category = c("A", "B", "C", "D", "E"), - value = c(25, 40, 15, 35, 30), - stringsAsFactors = FALSE - ) - - p <- lollipop(df = test_data, x = "category", y = "value") - - # Check that the plot is a ggplot object - expect_s3_class(p, "ggplot") - - # Check that the plot contains the essential layers - expect_true(any(sapply(p$layers, function(x) inherits(x$geom, "GeomPoint")))) - expect_true(any(sapply(p$layers, function(x) { - inherits(x$geom, "GeomLinerange") - }))) - - # Check that the data is correctly mapped - expect_equal(rlang::as_name(p$mapping$x), "category") - expect_equal(rlang::as_name(p$mapping$y), "value") -}) - -test_that("horizontal lollipop (hlollipop) flips coordinates", { - test_data <- data.frame( - category = c("A", "B", "C", "D", "E"), - value = c(25, 40, 15, 35, 30), - stringsAsFactors = FALSE - ) - - p <- hlollipop(df = test_data, x = "category", y = "value") - - # Check that coordinates are flipped - expect_true(any(sapply(p$layers, function(x) inherits(x$geom, "GeomPoint")))) - expect_true(any(sapply(p$layers, function(x) { - inherits(x$geom, "GeomLinerange") - }))) - expect_true(inherits(p$coordinates, "CoordFlip")) -}) - -test_that("grouped lollipop uses side-by-side positioning", { - test_data <- data.frame( - category = c("A", "B", "C", "A", "B", "C"), - value = c(25, 40, 15, 35, 30, 45), - group = c("Group 1", "Group 1", "Group 1", "Group 2", "Group 2", "Group 2"), - stringsAsFactors = FALSE - ) - - p <- lollipop(df = test_data, x = "category", y = "value", group = "group") - - # Check that group aesthetic is set for fill - expect_equal(rlang::as_name(p$mapping$fill), "group") - - # Check for group-related mappings - expect_true(length(grep("group", as.character(p$mapping))) > 0) - - # Check that position dodge is used for points and lineranges - linerange_layer <- which(sapply(p$layers, function(x) { - inherits(x$geom, "GeomLinerange") - }))[1] - point_layer <- which(sapply(p$layers, function(x) { - inherits(x$geom, "GeomPoint") - }))[1] - - expect_true(inherits(p$layers[[point_layer]]$position, "PositionDodge")) - expect_true(inherits(p$layers[[linerange_layer]]$position, "PositionDodge")) -}) - -test_that("dodge_width parameter controls group spacing", { - test_data <- data.frame( - category = c("A", "B", "A", "B"), - value = c(25, 40, 35, 30), - group = c("Group 1", "Group 1", "Group 2", "Group 2"), - stringsAsFactors = FALSE - ) - - # Create plots with different dodge widths - p1 <- lollipop( - df = test_data, - x = "category", - y = "value", - group = "group", - dodge_width = 0.5 - ) - p2 <- lollipop( - df = test_data, - x = "category", - y = "value", - group = "group", - dodge_width = 1.0 - ) - - # Extract position dodge objects - linerange_layer1 <- which(sapply(p1$layers, function(x) { - inherits(x$geom, "GeomLinerange") - }))[1] - linerange_layer2 <- which(sapply(p2$layers, function(x) { - inherits(x$geom, "GeomLinerange") - }))[1] - - dodge1 <- p1$layers[[linerange_layer1]]$position - dodge2 <- p2$layers[[linerange_layer2]]$position - - # Check that dodge width is correctly set - expect_equal(dodge1$width, 0.5) - expect_equal(dodge2$width, 1.0) -}) - -test_that("lollipop handles missing values correctly", { - test_data <- data.frame( - category = c("A", "B", "C", "D", NA), - value = c(25, 40, NA, 35, 30), - group = c("Group 1", NA, "Group 1", "Group 2", "Group 1"), - stringsAsFactors = FALSE - ) - - # With default NA removal - p <- lollipop( - df = test_data, - x = "category", - y = "value", - group = "group" - ) - - # Should only have 2 rows of data (A and D) - expect_equal(nrow(p$data), 2) - - # With specific NA handling - p2 <- lollipop( - df = test_data, - x = "category", - y = "value", - group = "group", - x_rm_na = FALSE, - y_rm_na = FALSE, - group_rm_na = FALSE - ) - - # Should have more rows since we're not removing NAs - expect_true(nrow(p2$data) > 2) -}) - -test_that("lollipop applies ordering correctly", { - test_data <- data.frame( - category = c("B", "A", "D", "C", "E"), - value = c(25, 40, 15, 35, 30), - stringsAsFactors = FALSE - ) - - # With y ordering - p1 <- lollipop( - df = test_data, - x = "category", - y = "value", - order = "y" - ) - - # With no ordering - p2 <- lollipop( - df = test_data, - x = "category", - y = "value", - order = "none" - ) - - # We don't test the specific order since it depends on the implementation - # of reorder_by, which is tested separately. Instead, just check that - # the ordered and unordered versions are different. - - # Convert factor to character for comparison - plot_categories_y <- as.character(p1$data$category) - plot_categories_none <- as.character(p2$data$category) - - # The ordered version should be different than the unordered version - expect_false(identical(plot_categories_y, plot_categories_none)) -}) - -test_that("lollipop handles facets correctly", { - test_data <- data.frame( - category = rep(c("A", "B", "C"), 2), - value = c(25, 40, 15, 35, 30, 45), - facet_var = rep(c("Facet 1", "Facet 2"), each = 3), - stringsAsFactors = FALSE - ) - - p <- lollipop( - df = test_data, - x = "category", - y = "value", - facet = "facet_var" - ) - - # Check that facet is applied - expect_true(!is.null(p$facet)) -}) - -test_that("lollipop respects custom appearance settings", { - test_data <- data.frame( - category = c("A", "B", "C"), - value = c(25, 40, 15), - stringsAsFactors = FALSE - ) - - custom_color <- "#FF5733" - custom_line_color <- "#33FF57" - custom_dot_size <- 5 - custom_line_size <- 1.5 - custom_alpha <- 0.7 - - p <- lollipop( - df = test_data, - x = "category", - y = "value", - add_color = custom_color, - line_color = custom_line_color, - dot_size = custom_dot_size, - line_size = custom_line_size, - alpha = custom_alpha - ) - - # Find the point and linerange layers - point_layer <- which(sapply(p$layers, function(x) { - inherits(x$geom, "GeomPoint") - }))[1] - linerange_layer <- which(sapply(p$layers, function(x) { - inherits(x$geom, "GeomLinerange") - }))[1] - - # Check that point and linerange layers exist - expect_true(point_layer > 0) - expect_true(linerange_layer > 0) - - # Check that size parameters match - expect_equal(p$layers[[point_layer]]$aes_params$size, custom_dot_size) - expect_equal(p$layers[[point_layer]]$aes_params$alpha, custom_alpha) - - # Check that proper colors are applied somewhere in the plot - # We don't test for exact color values since the implementation might vary - # Just check that the plot was created successfully - expect_s3_class(p, "ggplot") - - # Verify that some aes_params exist in the layers - all_aes_params <- lapply(p$layers, function(l) names(l$aes_params)) - expect_true(length(unlist(all_aes_params)) > 0) -}) diff --git a/tests/testthat/test-palette.R b/tests/testthat/test-palette.R deleted file mode 100644 index 6bd4051..0000000 --- a/tests/testthat/test-palette.R +++ /dev/null @@ -1,71 +0,0 @@ -# Tests for palette functions - -test_that("palette returns expected color vectors", { - # Test default palette - default_pal <- palette() - expect_type(default_pal, "character") - expect_length(default_pal, 5) # cat_5_main has 5 colors - - # Test specific palette - cat_3_pal <- palette("cat_3_aquamarine") - expect_type(cat_3_pal, "character") - expect_length(cat_3_pal, 3) - - # Test reversed palette - reversed_pal <- palette("cat_5_main", reverse = TRUE) - expect_equal(reversed_pal, rev(palette("cat_5_main"))) - - # Test custom palettes - custom_pal <- palette("cat_3_custom_1") - expect_equal(custom_pal, c("#003F5C", "#58508D", "#FFA600")) -}) - -test_that("show_palettes option works", { - # Test show_palettes parameter - pal_names <- palette(show_palettes = TRUE) - expect_type(pal_names, "character") - expect_true(length(pal_names) > 0) - expect_true("cat_5_main" %in% pal_names) - expect_true("cat_3_custom_1" %in% pal_names) -}) - -test_that("palette handles errors correctly", { - # Test non-existent palette - expect_error( - palette("not_a_real_palette"), - "Palette not defined" - ) - - # Test parameter validation - expect_error(palette(palette = 123)) - expect_error(palette(palette = c("cat_5_main", "cat_3_custom_1"))) - expect_error(palette(reverse = "yes")) - expect_error(palette(show_palettes = "TRUE")) -}) - -test_that("all palette entries are valid colors", { - # Get all palette names - pal_names <- palette(show_palettes = TRUE) - - # Check each palette contains valid colors - for (pal_name in pal_names) { - pal_colors <- palette(pal_name) - - # Check that each color can be processed by grDevices - for (color in pal_colors) { - expect_true( - # Check if the color is valid by converting it to RGB - !is.na(grDevices::col2rgb(color)[1, 1]), - info = paste("Invalid color in palette", pal_name, ":", color) - ) - } - } -}) - -test_that("palettes have expected lengths", { - # Check specific palette lengths - expect_length(palette("cat_2_yellow"), 2) - expect_length(palette("cat_3_aquamarine"), 3) - expect_length(palette("cat_5_main"), 5) - expect_length(palette("cat_8_tol_adapted"), 8) -}) diff --git a/tests/testthat/test-palette_gen.R b/tests/testthat/test-palette_gen.R deleted file mode 100644 index a38e068..0000000 --- a/tests/testthat/test-palette_gen.R +++ /dev/null @@ -1,223 +0,0 @@ -# Tests for palette_gen functions - -test_that("palette_gen validates parameters correctly", { - # Check that invalid type throws error - expect_error( - palette_gen("cat_5_main", "invalid_type"), - "Assertion on 'type' failed" - ) - - # Check that invalid palette throws error - expect_error( - palette_gen(123, "categorical"), - "Assertion on 'palette' failed" - ) - expect_error( - palette_gen(c("cat_5_main", "cat_3_custom_1"), "categorical"), - "Assertion on 'palette' failed" - ) - - # Check that invalid direction throws error - expect_error( - palette_gen("cat_5_main", "categorical", direction = 0), - "Assertion on 'abs\\(direction\\) == 1' failed" - ) - expect_error( - palette_gen("cat_5_main", "categorical", direction = 2), - "Assertion on 'direction' failed" - ) - - # Check valid types don't error - expect_type(palette_gen("cat_5_main", "categorical"), "closure") - expect_type(palette_gen("cat_5_main", "sequential"), "closure") - expect_type(palette_gen("div_5_orange_blue", "divergent"), "closure") -}) - -test_that("palette_gen returns appropriate function types", { - # Categorical palette should return a function - cat_fn <- palette_gen("cat_5_main", "categorical") - expect_true(is.function(cat_fn)) - - # Sequential palette should return a function - seq_fn <- palette_gen("cat_5_main", "sequential") - expect_true(is.function(seq_fn)) - - # Divergent palette should return a function - div_fn <- palette_gen("div_5_orange_blue", "divergent") - expect_true(is.function(div_fn)) -}) - -test_that("palette_gen dispatches to correct function types", { - # Test for categorical type - cat_result <- palette_gen("cat_5_main", "categorical", direction = -1) - expect_true(is.function(cat_result)) - - # Verify it behaves like a categorical palette function - expect_equal(length(cat_result(3)), 3) - expect_type(cat_result(3), "character") - - # Test for sequential type - seq_result <- palette_gen("cat_5_main", "sequential", direction = -1) - expect_true(is.function(seq_result)) - - # Verify it behaves like a sequential palette function - expect_equal(length(seq_result(5)), 5) - expect_type(seq_result(5), "character") - - # Test for divergent type - should work like sequential - div_result <- palette_gen("div_5_orange_blue", "divergent", direction = -1) - expect_true(is.function(div_result)) - expect_equal(length(div_result(7)), 7) - expect_type(div_result(7), "character") -}) - -test_that("palette_gen_categorical validates parameters", { - # Test palette parameter validation - expect_error( - palette_gen_categorical(palette = 123), - "Assertion on 'palette' failed" - ) - expect_error( - palette_gen_categorical(palette = c("cat_5_main", "cat_3_custom_1")), - "Assertion on 'palette' failed" - ) - - # Test direction parameter validation - expect_error( - palette_gen_categorical(direction = 0), - "Assertion on 'abs\\(direction\\) == 1' failed" - ) - expect_error( - palette_gen_categorical(direction = 2), - "Assertion on 'direction' failed" - ) - expect_error( - palette_gen_categorical(direction = -2), - "Assertion on 'direction' failed" - ) - expect_error( - palette_gen_categorical(direction = "1"), - "Assertion on 'direction' failed" - ) -}) - -test_that("palette_gen_categorical returns a function", { - fn <- palette_gen_categorical() - expect_true(is.function(fn)) -}) - -test_that("palette_gen_categorical function generates correct colors", { - # Get the palette function - fn <- palette_gen_categorical("cat_5_main") - - # Get the actual colors from the palette - pal_colors <- palette("cat_5_main") - - # Test default behavior (return all colors) - expect_equal(fn(NULL), pal_colors) - - # Test specific number of colors - expect_equal(fn(3), pal_colors[1:3]) - - # Test direction reversal - rev_fn <- palette_gen_categorical("cat_5_main", direction = -1) - expect_equal(rev_fn(NULL), rev(pal_colors)) -}) - -test_that("palette_gen_categorical warns when requesting too many colors", { - fn <- palette_gen_categorical("cat_3_aquamarine") - expect_warning(fn(10), "Not enough colors in this palette!") -}) - -test_that("palette_gen_sequential validates parameters", { - # Test palette parameter validation - expect_error( - palette_gen_sequential(palette = 123), - "Assertion on 'palette' failed" - ) - expect_error( - palette_gen_sequential(palette = c("cat_5_main", "cat_3_custom_1")), - "Assertion on 'palette' failed" - ) - - # Test direction parameter validation - expect_error( - palette_gen_sequential(direction = 0), - "Assertion on 'abs\\(direction\\) == 1' failed" - ) - expect_error( - palette_gen_sequential(direction = 2), - "Assertion on 'direction' failed" - ) - expect_error( - palette_gen_sequential(direction = -2), - "Assertion on 'direction' failed" - ) - expect_error( - palette_gen_sequential(direction = "1"), - "Assertion on 'direction' failed" - ) -}) - -test_that("palette_gen_sequential returns a colorRampPalette function", { - # Test with default parameters - fn_default <- palette_gen_sequential() - expect_true(is.function(fn_default)) - - # Test with specific palette - fn <- palette_gen_sequential("cat_5_main") - expect_true(is.function(fn)) - - # colorRampPalette functions take an integer and return a character vector - colors <- fn(10) - expect_type(colors, "character") - expect_length(colors, 10) - - # Each color should be a valid hex code - hex_pattern <- "^#[0-9A-Fa-f]{6}$" - for (color in colors) { - expect_match(color, hex_pattern) - } -}) - -test_that("palette_gen_sequential handles direction parameter correctly", { - # Create functions with opposite directions - fn1 <- palette_gen_sequential("cat_5_main", direction = 1) - fn2 <- palette_gen_sequential("cat_5_main", direction = -1) - - # Generate colors - colors1 <- fn1(5) - colors2 <- fn2(5) - - # Colors should be different when direction is different - expect_false(identical(colors1, colors2)) -}) - -test_that("palette_gen functions work with all available palettes", { - # Get all palette names - pal_names <- palette(show_palettes = TRUE) - - for (pal_name in pal_names) { - # Test categorical - check only that it returns a function - cat_fn <- tryCatch( - palette_gen_categorical(pal_name), - error = function(e) NULL - ) - if (!is.null(cat_fn)) { - expect_true(is.function(cat_fn)) - # Use min(3, length of palette colors) to avoid warning - n_colors <- min(3, length(palette(pal_name))) - expect_type(cat_fn(n_colors), "character") - } - - # Test sequential - check only that it returns a function - seq_fn <- tryCatch( - palette_gen_sequential(pal_name), - error = function(e) NULL - ) - if (!is.null(seq_fn)) { - expect_true(is.function(seq_fn)) - expect_type(seq_fn(3), "character") - } - } -}) diff --git a/tests/testthat/test-reorder_by.R b/tests/testthat/test-reorder_by.R deleted file mode 100644 index 34db021..0000000 --- a/tests/testthat/test-reorder_by.R +++ /dev/null @@ -1,160 +0,0 @@ -test_that("reorder_by works with character columns", { - test_data <- data.frame( - category = c("B", "A", "D", "C", "E"), - value = c(25, 40, 15, 35, 30), - group = c("Group 1", "Group 2", "Group 1", "Group 2", "Group 1"), - stringsAsFactors = FALSE - ) - - # Test order by values (y) - result <- reorder_by(test_data, "category", "value", order = "y") - expected_order <- c("D", "B", "E", "C", "A") - expect_equal(as.character(result$category), expected_order) - - # Test reversed order - result_rev <- reorder_by( - test_data, - "category", - "value", - order = "y", - dir_order = -1 - ) - expect_equal(as.character(result_rev$category), rev(expected_order)) - - # Test alphabetical order - result_alpha <- reorder_by(test_data, "category", "value", order = "x") - expect_equal(as.character(result_alpha$category), c("A", "B", "C", "D", "E")) -}) - -test_that("reorder_by works with factor columns", { - test_data <- data.frame( - category = factor(c("B", "A", "D", "C", "E")), - value = c(25, 40, 15, 35, 30), - group = factor(c("Group 1", "Group 2", "Group 1", "Group 2", "Group 1")) - ) - - # Test order by values (y) - result <- reorder_by(test_data, "category", "value", order = "y") - expect_true(is.factor(result$category)) - expect_equal(as.character(result$category), c("D", "B", "E", "C", "A")) - - # Test factor levels - expect_equal(levels(result$category), c("D", "B", "E", "C", "A")) -}) - -test_that("reorder_by handles grouped ordering correctly", { - test_data <- data.frame( - category = c("B", "A", "D", "C", "E"), - value = c(25, 40, 15, 35, 30), - group = c("Group 1", "Group 2", "Group 1", "Group 2", "Group 1"), - stringsAsFactors = FALSE - ) - - # Test grouped_y ordering - result <- reorder_by( - test_data, - "category", - "value", - group = "group", - order = "grouped_y" - ) - - # Group 1 items should be ordered by value within Group 1 - group1_items <- result[result$group == "Group 1", "category"] - group1_values <- result[result$group == "Group 1", "value"] - expect_true(all(group1_values == sort(group1_values))) - - # Group 2 items should be ordered by value within Group 2 - group2_items <- result[result$group == "Group 2", "category"] - group2_values <- result[result$group == "Group 2", "value"] - expect_true(all(group2_values == sort(group2_values))) - - # Test grouped_x ordering - result_x <- reorder_by( - test_data, - "category", - "value", - group = "group", - order = "grouped_x" - ) - - # Groups should remain intact, and items should be ordered alphabetically within groups - group1_items_x <- as.character(result_x[ - result_x$group == "Group 1", - "category" - ]) - expect_equal(group1_items_x, sort(group1_items_x)) -}) - -test_that("reorder_by handles fallback cases", { - test_data <- data.frame( - category = c("B", "A", "D", "C", "E"), - value = c(25, 40, 15, 35, 30), - stringsAsFactors = FALSE - ) - - # Test empty group with grouped_y - expect_warning( - result <- reorder_by( - test_data, - "category", - "value", - group = "", - order = "grouped_y" - ), - "Group is empty" - ) - # Should fall back to ordering by y - expect_equal(as.character(result$category), c("D", "B", "E", "C", "A")) - - # Test empty group with grouped_x - expect_warning( - result_x <- reorder_by( - test_data, - "category", - "value", - group = "", - order = "grouped_x" - ), - "Group is empty" - ) - # Should fall back to alphabetical ordering - expect_equal(as.character(result_x$category), c("A", "B", "C", "D", "E")) -}) - -test_that("reorder_by preserves row data correctly", { - test_data <- data.frame( - category = c("B", "A", "D", "C", "E"), - value = c(25, 40, 15, 35, 30), - extra = c("x1", "x2", "x3", "x4", "x5"), - stringsAsFactors = FALSE - ) - - # Test that reordering preserves all columns and their associations - result <- reorder_by(test_data, "category", "value", order = "y") - - # Values should correspond to the correct categories - expect_equal(result$value[result$category == "A"], 40) - expect_equal(result$value[result$category == "B"], 25) - expect_equal(result$value[result$category == "C"], 35) - expect_equal(result$value[result$category == "D"], 15) - expect_equal(result$value[result$category == "E"], 30) - - # Extra column should maintain its associations - expect_equal(result$extra[result$category == "A"], "x2") - expect_equal(result$extra[result$category == "B"], "x1") -}) - -test_that("reorder_by handles no reordering case", { - test_data <- data.frame( - category = c("B", "A", "D", "C", "E"), - value = c(25, 40, 15, 35, 30), - stringsAsFactors = FALSE - ) - - # Test no reordering - result <- reorder_by(test_data, "category", "value", order = "none") - - # Order should be preserved from the original data - expect_equal(as.character(result$category), c("B", "A", "D", "C", "E")) -}) diff --git a/vignettes/.gitignore b/vignettes/.gitignore deleted file mode 100644 index 9e2bd63..0000000 --- a/vignettes/.gitignore +++ /dev/null @@ -1,4 +0,0 @@ -*.html -*.R - -/.quarto/ diff --git a/visualizeR.Rproj b/visualizeR.Rproj index ffb476d..497f8bf 100644 --- a/visualizeR.Rproj +++ b/visualizeR.Rproj @@ -1,5 +1,4 @@ Version: 1.0 -ProjectId: e1665596-bf01-400a-b4a1-2f46436c0b23 RestoreWorkspace: Default SaveWorkspace: Default