#' @title Abord bad argument #' #' @param arg An argument #' @param must What arg must be #' @param not Optional. What arg must not be. #' #' @return A stop statement abort_bad_argument <- function(arg, must, not = NULL) { msg <- glue::glue("`{arg}` must {must}") if (!is.null(not)) { not <- typeof(not) msg <- glue::glue("{msg}; not {not}.") } rlang::abort("error_bad_argument", message = msg, arg = arg, must = must, not = not ) } #' @title Stop statement "If not in colnames" with colnames #' #' @param .tbl A tibble #' @param cols A vector of column names (quoted) #' @param df Provide the tibble name as a character string #' @param arg Default to NULL. #' #' @return A stop statement if_not_in_stop <- function(.tbl, cols, df, arg = NULL) { if (is.null(arg)) { msg <- glue::glue("The following column/s is/are missing in `{df}`:") } else { msg <- glue::glue("The following column/s from `{arg}` is/are missing in `{df}`:") } if (!all(cols %in% colnames(.tbl))) { rlang::abort( c("Missing columns", "*" = paste( msg, paste( subvec_not_in(cols, colnames(.tbl)), collapse = ", " ) ) ) ) } } #' @title Stop statement "If not in vector" #' #' @param vec A vector of character strings #' @param cols A set of character strings #' @param vec_name Provide the vector name as a character string #' @param arg Default to NULL. #' #' @return A stop statement if some elements of vec are not in cols if_vec_not_in_stop <- function(vec, cols, vec_name, arg = NULL) { if (is.null(arg)) { msg <- glue::glue("The following element/s is/are missing in `{vec_name}`:") } else { msg <- glue::glue("The following element/s from `{arg}` is/are missing in `{vec_name}`:") } if (!all(cols %in% vec)) { rlang::abort( c("Missing elements", "*" = paste( msg, paste( subvec_not_in(cols, vec), collapse = ", " ) ) ) ) } } #' @title Subvec not in #' #' @param vector A vector to subset #' @param set A set-vector #' #' @return A subset of vector not in set subvec_not_in <- function(vector, set) { vector[!(vector %in% set)] } # Map helpers ------------------------------------------------------------- # Thanks to https://github.com/r-tmap/tmap/blob/master/R/map_num2pal.R pretty_count <- function(x, n, ...) { x <- na.omit(x) if (!length(x)) { return(x) } if (!is.integer(x)) x <- as.integer(x) mn <- min(x) mx <- max(x) any0 <- any(x == 0) if (mn < 0) { n <- floor(n / 2) pneg <- -rev(pretty_count(-x[x < 0], n = n, ...)) + 1L pneg <- pneg[pneg != 0L] x <- x[x > 0] any0 <- TRUE } else { pneg <- integer() } if (any0) x <- x[x != 0L] p <- pretty(x - 1L, n = n, ...) + 1L p <- p[(p %% 1) == 0] p <- p[p != 0L] if (length(x) < 2) { if (any0) { return(c(0L, p)) } else { return(p) } } step <- p[2] - p[1] if (p[length(p)] == mx) p <- c(p, mx + step) if (any0) { c(pneg, 0L, p) } else { c(pneg, p) } } breaks <- pretty_count(indicator_admin1$opn_dfc, n = 5) style <- "fixed" # q <- num2breaks(indicator_admin1$opn_dfc, n = 5, style = style, breaks = breaks, interval.closure = "left", var = var, as.count = T, args = style.args) breaks_n <- function(breaks, as_count = TRUE) fancy_breaks(breaks, intervals = TRUE, as.count = TRUE) fancy_breaks <- function(vec, as.count = FALSE, intervals=FALSE, interval.closure="left", fun=NULL, scientific=FALSE, big.num.abbr = c("mln" = 6, "bln" = 9), prefix = "", suffix = "", text.separator="to", text.less.than=c("less", "than"), text.or.more=c("or", "more"), text.align="left", text.to.columns=FALSE, digits=NA, html.escape = TRUE, ...) { args <- list(...) n <- length(vec) if (!is.null(fun)) { x <- do.call(fun, list(vec)) } else if (all(is.infinite(vec))) { x <- as.character(vec) } else { # calculate magnitude, needed to determine digits and big number abbreviations vec_fin <- unique(vec[!is.infinite(vec)]) frm <- gsub(" ", "", sprintf("%20.10f", abs(vec_fin))) mag <- max(nchar(frm)-11) if (as.count) { steps <- (vec[-1] - vec[-n]) vec <- c(vec, vec - 1L, vec + 1L) # needed for: {1, 2, ... 9} digits <- 0 } else { # get number of decimals (which is number of decimals in vec, which is reduced when mag is large) ndec <- max(10 - nchar(frm) + nchar(sub("0+$","",frm))) if (is.na(digits)) { digits <- max(min(ndec, 4-mag), 0) # add sign to frm frm_sign <- unique(paste0(ifelse(vec_fin<0, "-", "+"), frm)) # test if number of digits is sufficient for unique labels if (!scientific) { while (anyDuplicated(substr(frm_sign, 1, nchar(frm_sign)-10 + digits)) && (digits < 10)) { digits <- digits + 1 } } } } if (!scientific || as.count) { # check whether big number abbrevations should be used ext <- "" if (!is.na(big.num.abbr[1])) { big.num.abbr <- sort(big.num.abbr, decreasing = TRUE) for (i in 1:length(big.num.abbr)) { o <- unname(big.num.abbr[i]) if (mag>(o+2) || (mag > o && all(vec - floor(vec/(10^o))*(10^o) < 1))) { vec <- vec / (10^o) ext <- paste0(" ", names(big.num.abbr)[i]) break } } } # set default values if (!("big.mark" %in% names(args))) args$big.mark <- "," if (!("format" %in% names(args))) args$format <- "f" if (!("preserve.width" %in% names(args))) args$preserve.width <- "none" x <- paste(do.call("formatC", c(list(x=vec, digits=digits), args)), ext, sep="") x <- paste0(prefix, x, suffix) } else { if (!("format" %in% names(args))) args$format <- "g" x <- do.call("formatC", c(list(x=vec, digits=digits), args)) } if (as.count) { x1 <- x[1:(n-1)] x2 <- x[(n+2):(2*n)] x1p1 <- x[(2*n+1):(3*n-1)] } # x <- formatC(vec, format = "f", digits = 0) # x1 <- x[-n] # x2 <- formatC(vec[-1] - 1L, format = "f", digits = 0) # xs <- (vec[-1] - vec[-n]) # x1p1 <- formatC(vec[-n] + 1L, format = "f", digits = 0) } if (intervals) { if (scientific) { if (as.count) { # discrete lbls <- paste("{", x1, "}", sep = "") lbls[steps == 2] <- paste("{", x1[steps == 2], ", ", x2[steps == 2], "}", sep="") lbls[steps > 2] <- paste("{", x1[steps > 2], ", ", x1p1[steps > 2], ", ..., ", x2[steps > 2], "}", sep="") } else { # continuous if (interval.closure=="left") { lbls <- paste("[", x[-n], ", ", x[-1], ")", sep="") lbls[n-1] <- paste(substr(lbls[n-1], 1, nchar(lbls[n-1])-1), "]", sep="") } else { lbls <- paste("(", x[-n], ", ", x[-1], "]", sep="") lbls[1] <- paste("[", substr(lbls[1], 2, nchar(lbls[1])), sep="") } } } else { if (as.count) { lbls <- x1 lbls[steps>1] <- paste(x1[steps>1], x2[steps>1], sep = paste0(" ", text.separator, " ")) if (vec[n]==Inf) lbls[n-1] <- paste(x1[n-1], paste(text.or.more, collapse = " "), sep = " ") } else { x[vec==-Inf] <- "" lbls <- paste(x[-n], x[-1], sep = paste0(" ", text.separator, " ")) if (vec[1]==-Inf) lbls[1] <- paste(paste(text.less.than, collapse = " "), x[2], sep = " ") if (vec[n]==Inf) lbls[n-1] <- paste(x[n-1], paste(text.or.more, collapse = " "), sep = " ") } if (text.to.columns) { #xtra <- as.numeric(!is.na(text.align) && text.align=="right") nc1 <- nchar(paste(x[-n], " ", sep = "")) + 1 nc2 <- rep(nchar(paste(text.separator, " ", sep = "")), n-1) lbls_breaks <- matrix(c(nc1, nc1+nc2), ncol=2) if (vec[1]==-Inf) { if (length(text.less.than)==1) { lbls_breaks[1,] <- rep(nchar(paste(text.less.than[1], " ", sep = "")) + 1, 2) } else { lbls_breaks[1,] <- cumsum(c(nchar(paste(text.less.than[1], " ", sep = "")) + 1, nchar(text.less.than[2])+1)) } } if (vec[n]==Inf) { if (length(text.or.more)==1) { lbls_breaks[n-1,] <- rep(nchar(paste(x[n-1], " ", sep = "")) + 1, 2) } else { lbls_breaks[n-1,] <- cumsum(c(nchar(paste(x[n-1], " ", sep = "")) + 1, nchar(text.or.more[1])+1)) } } attr(lbls, "brks") <- lbls_breaks } } } y <- if (intervals) lbls else x attr(y, "align") <- text.align y } num2breaks <- function(x, n, style, breaks, approx=FALSE, interval.closure="left", var = NULL, as.count = FALSE, args = list()) { tmapOptions = get("tmapOptions", envir = .TMAP_CACHE) show.warnings <- tmapOptions$show.warnings nobs <- sum(!is.na(x)) # create intervals and assign colors if (style=="fixed") { q <- list(var=x, brks=breaks) if (any(na.omit(x) < min(breaks)) && show.warnings) warning("Values have found that are less than the lowest break", call. = FALSE) if (any(na.omit(x) > max(breaks)) && show.warnings) warning("Values have found that are higher than the highest break", call. = FALSE) attr(q, "style") <- "fixed" attr(q, "nobs") <- nobs attr(q, "intervalClosure") <- interval.closure class(q) <- "classIntervals" } else { if (nobs==0) { if (!is.null(var)) { stop("Numerical variable \"", var, "\" only contains missing values.", call.=FALSE) } else { stop("Numerical variable only contains missing values.", call.=FALSE) } } nunique <- length(na.omit(unique(x))) if (nunique == 1 && style!="pretty" && show.warnings) { if (!is.null(var)) { warning("Single unique value found for the variable \"", var, "\", so style set to \"pretty\"", call. = FALSE) } else { warning("Single unique value found, so style set to \"pretty\"", call. = FALSE) } } tempx <- nunique <= n if (tempx) { x_orig <- x if (length(na.omit(unique(x))) == 1) x <- pretty(x) x <- seq(min(x, na.rm = TRUE), max(x, na.rm = TRUE), length.out = n + 1) } q <- suppressWarnings(do.call(classInt::classIntervals, c(list(x, n, style= style, intervalClosure=interval.closure), args))) if (tempx) q$var <- x_orig } if (approx && style != "fixed") { if (n >= length(unique(x)) && style=="equal") { # to prevent classIntervals to set style to "unique" q <- list(var=x, brks=seq(min(x, na.rm=TRUE), max(x, na.rm=TRUE), length.out=n)) attr(q, "intervalClosure") <- interval.closure class(q) <- "classIntervals" } else { brks <- q$brks # to prevent ugly rounded breaks such as -.5, .5, ..., 100.5 for n=101 qm1 <- suppressWarnings(do.call(classInt::classIntervals, c(list(x, n-1, style= style, intervalClosure=interval.closure), args))) brksm1 <- qm1$brks qp1 <- suppressWarnings(do.call(classInt::classIntervals, c(list(x, n+1, style= style, intervalClosure=interval.closure), args))) brksp1 <- qp1$brks if (min(brksm1) > min(brks) && max(brksm1) < max(brks)) { q <- qm1 } else if (min(brksp1) > min(brks) && max(brksp1) < max(brks)) { q <- qp1 } } } q } cont_breaks <- function(breaks, n=101) { x <- round(seq(1, 101, length.out=length(breaks))) unlist(lapply(1L:(length(breaks)-1L), function(i) { y <- seq(breaks[i], breaks[i+1], length.out=x[i+1]-x[i]+1) if (i!=1) y[-1] else y }), use.names = FALSE) } num2breaks <- function(x, n, style = "fixed", breaks, approx = FALSE, interval.closure = "left", var = NULL, as.count = FALSE, args = list()) { show.warnings <- TRUE nobs <- sum(!is.na(x)) # create intervals and assign colors if (style == "fixed") { q <- list( var = x, brks = breaks ) if (any(na.omit(x) < min(breaks)) && show.warnings) warning("Values have found that are less than the lowest break", call. = FALSE) if (any(na.omit(x) > max(breaks)) && show.warnings) warning("Values have found that are higher than the highest break", call. = FALSE) attr(q, "style") <- "fixed" attr(q, "nobs") <- nobs attr(q, "intervalClosure") <- interval.closure class(q) <- "classIntervals" } else { if (nobs == 0) { if (!is.null(var)) { stop("Numerical variable \"", var, "\" only contains missing values.", call. = FALSE) } else { stop("Numerical variable only contains missing values.", call. = FALSE) } } nunique <- length(na.omit(unique(x))) if (nunique == 1 && style != "pretty" && show.warnings) { if (!is.null(var)) { warning("Single unique value found for the variable \"", var, "\", so style set to \"pretty\"", call. = FALSE) } else { warning("Single unique value found, so style set to \"pretty\"", call. = FALSE) } } tempx <- nunique <= n if (tempx) { x_orig <- x if (length(na.omit(unique(x))) == 1) x <- pretty(x) x <- seq(min(x, na.rm = TRUE), max(x, na.rm = TRUE), length.out = n + 1) } q <- suppressWarnings(do.call(classInt::classIntervals, c(list(x, n, style = style, intervalClosure = interval.closure), args))) if (tempx) q$var <- x_orig } if (approx && style != "fixed") { if (n >= length(unique(x)) && style == "equal") { # to prevent classIntervals to set style to "unique" q <- list(var = x, brks = seq(min(x, na.rm = TRUE), max(x, na.rm = TRUE), length.out = n)) attr(q, "intervalClosure") <- interval.closure class(q) <- "classIntervals" } else { brks <- q$brks # to prevent ugly rounded breaks such as -.5, .5, ..., 100.5 for n=101 qm1 <- suppressWarnings(do.call(classInt::classIntervals, c(list(x, n - 1, style = style, intervalClosure = interval.closure), args))) brksm1 <- qm1$brks qp1 <- suppressWarnings(do.call(classInt::classIntervals, c(list(x, n + 1, style = style, intervalClosure = interval.closure), args))) brksp1 <- qp1$brks if (min(brksm1) > min(brks) && max(brksm1) < max(brks)) { q <- qm1 } else if (min(brksp1) > min(brks) && max(brksp1) < max(brks)) { q <- qp1 } } } q } breaks[length(breaks)] <- breaks[length(breaks)] + 1L