284 lines
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284 lines
25 KiB
HTML
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<title>What a color! What a viz! • visualizeR</title>
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<a class="navbar-brand me-2" href="index.html">visualizeR</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">0.4.9000</small>
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<main id="main" class="col-md-9"><div class="section level1">
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<div class="page-header">
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<img src="logo.png" class="logo" alt=""><h1 id="visualizer-">visualizeR <a class="anchor" aria-label="anchor" href="#visualizer-"></a>
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</h1>
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</div>
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<blockquote>
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<p>What a color! What a viz!</p>
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</blockquote>
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<p><code>visualizeR</code> proposes some utils to get REACH and AGORA colors, ready-to-go color palettes, and a few visualization functions (horizontal hist graph for instance).</p>
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<div class="section level2">
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<h2 id="installation">Installation<a class="anchor" aria-label="anchor" href="#installation"></a>
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</h2>
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<p>You can install the last version of visualizeR from <a href="https://github.com/" class="external-link">GitHub</a> with:</p>
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<div class="sourceCode" id="cb1"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="co"># install.packages("devtools")</span></span>
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<span><span class="fu">devtools</span><span class="fu">::</span><span class="fu"><a href="https://remotes.r-lib.org/reference/install_github.html" class="external-link">install_github</a></span><span class="op">(</span><span class="st">"gnoblet/visualizeR"</span>, build_vignettes <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span></code></pre></div>
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</div>
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<div class="section level2">
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<h2 id="roadmap">Roadmap<a class="anchor" aria-label="anchor" href="#roadmap"></a>
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</h2>
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<p>Roadmap is as follows:</p>
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<ul class="task-list">
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<li>
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<input type="checkbox" disabled checked>Add IMPACT’s colors</li>
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<li>
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<input type="checkbox" disabled checked>Add all color palettes from the internal documentation</li>
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<li>
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<input type="checkbox" disabled>There remains to be added more-than-7-color palettes and black color palettes</li>
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<li>
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<input type="checkbox" disabled>Add new types of visualization (e.g. dumbbell plot)</li>
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<li>
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<input type="checkbox" disabled>Use examples</li>
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<li>
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<input type="checkbox" disabled>Add some ease-map functions</li>
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<li>
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<input type="checkbox" disabled>Add some interactive functions (maps and graphs)</li>
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</ul>
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</div>
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<div class="section level2">
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<h2 id="request">Request<a class="anchor" aria-label="anchor" href="#request"></a>
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</h2>
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<p>Please, do not hesitate to pull request any new viz or colors or color palettes, or to email request any change (<a href="mailto:guillaume.noblet@reach-initiative.org" class="email">guillaume.noblet@reach-initiative.org</a> or <a href="mailto:gnoblet@zaclys.net" class="email">gnoblet@zaclys.net</a>).</p>
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</div>
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<div class="section level2">
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<h2 id="colors">Colors<a class="anchor" aria-label="anchor" href="#colors"></a>
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</h2>
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<p>Color palettes for REACH, AGORA and IMPACT are available. Functions to access colors and palettes are <code>cols_initiative()</code> or <code>pal_initiative()</code>. For now, the initiative with the most colors and color palettes is REACH. Feel free to pull requests new AGORA and IMPACT colors.</p>
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<div class="sourceCode" id="cb2"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/gnoblet/visualizeR" class="external-link">visualizeR</a></span><span class="op">)</span></span>
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<span></span>
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<span><span class="co"># Get all saved REACH colors, named</span></span>
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<span><span class="fu"><a href="reference/cols_reach.html">cols_reach</a></span><span class="op">(</span>unnamed <span class="op">=</span> <span class="cn">F</span><span class="op">)</span><span class="op">[</span><span class="fl">1</span><span class="op">:</span><span class="fl">10</span><span class="op">]</span></span>
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<span><span class="co">#> white black main_grey main_red main_lt_grey main_beige </span></span>
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<span><span class="co">#> "#FFFFFF" "#000000" "#58585A" "#EE5859" "#C7C8CA" "#D2CBB8" </span></span>
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<span><span class="co">#> iroise_1 iroise_2 iroise_3 iroise_4 </span></span>
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<span><span class="co">#> "#DFECEF" "#B1D7E0" "#699DA3" "#236A7A"</span></span>
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<span></span>
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<span><span class="co"># Extract a color palette as hexadecimal codes and reversed</span></span>
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<span><span class="fu"><a href="reference/pal_reach.html">pal_reach</a></span><span class="op">(</span>palette <span class="op">=</span> <span class="st">"main"</span>, reversed <span class="op">=</span> <span class="cn">TRUE</span>, color_ramp_palette <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span>
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<span><span class="co">#> [1] "#58585A" "#EE5859" "#C7C8CA" "#D2CBB8"</span></span>
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<span></span>
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<span><span class="co"># Get all color palettes names</span></span>
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<span><span class="fu"><a href="reference/pal_reach.html">pal_reach</a></span><span class="op">(</span>show_palettes <span class="op">=</span> <span class="cn">T</span><span class="op">)</span></span>
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<span><span class="co">#> [1] "main" "primary" "secondary" "two_dots" </span></span>
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<span><span class="co">#> [5] "two_dots_flashy" "red_main" "red_main_5" "red_alt" </span></span>
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<span><span class="co">#> [9] "red_alt_5" "iroise" "iroise_5" "discrete_6" </span></span>
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<span><span class="co">#> [13] "red_2" "red_3" "red_4" "red_5" </span></span>
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<span><span class="co">#> [17] "red_6" "red_7" "green_2" "green_3" </span></span>
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<span><span class="co">#> [21] "green_4" "green_5" "green_6" "green_7" </span></span>
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<span><span class="co">#> [25] "artichoke_2" "artichoke_3" "artichoke_4" "artichoke_5" </span></span>
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<span><span class="co">#> [29] "artichoke_6" "artichoke_7" "blue_2" "blue_3" </span></span>
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<span><span class="co">#> [33] "blue_4" "blue_5" "blue_6" "blue_7"</span></span></code></pre></div>
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</div>
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<div class="section level2">
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<h2 id="charts">Charts<a class="anchor" aria-label="anchor" href="#charts"></a>
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</h2>
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<div class="section level3">
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<h3 id="example-1-bar-chart-already-reach-themed">Example 1: Bar chart, already REACH themed<a class="anchor" aria-label="anchor" href="#example-1-bar-chart-already-reach-themed"></a>
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</h3>
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<div class="sourceCode" id="cb3"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://github.com/gnoblet/visualizeR" class="external-link">visualizeR</a></span><span class="op">)</span></span>
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<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://allisonhorst.github.io/palmerpenguins/" class="external-link">palmerpenguins</a></span><span class="op">)</span></span>
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<span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">library</a></span><span class="op">(</span><span class="va"><a href="https://dplyr.tidyverse.org" class="external-link">dplyr</a></span><span class="op">)</span></span>
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<span></span>
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<span><span class="va">df</span> <span class="op"><-</span> <span class="va">penguins</span> <span class="op">|></span> </span>
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<span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/group_by.html" class="external-link">group_by</a></span><span class="op">(</span><span class="va">island</span>, <span class="va">species</span><span class="op">)</span> <span class="op">|></span> </span>
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<span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/summarise.html" class="external-link">summarize</a></span><span class="op">(</span></span>
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<span> mean_bl <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/mean.html" class="external-link">mean</a></span><span class="op">(</span><span class="va">bill_length_mm</span>, na.rm <span class="op">=</span> <span class="cn">T</span><span class="op">)</span>,</span>
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<span> mean_fl <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/mean.html" class="external-link">mean</a></span><span class="op">(</span><span class="va">flipper_length_mm</span>, na.rm <span class="op">=</span> <span class="cn">T</span><span class="op">)</span><span class="op">)</span> <span class="op">|></span> </span>
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<span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/group_by.html" class="external-link">ungroup</a></span><span class="op">(</span><span class="op">)</span></span>
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<span></span>
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<span><span class="co"># Simple bar chart by group with some alpha transparency</span></span>
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<span><span class="fu"><a href="reference/bar.html">bar</a></span><span class="op">(</span><span class="va">df</span>, <span class="va">island</span>, <span class="va">mean_bl</span>, <span class="va">species</span>, percent <span class="op">=</span> <span class="cn">FALSE</span>, alpha <span class="op">=</span> <span class="fl">0.6</span>, x_title <span class="op">=</span> <span class="st">"Mean of bill length"</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-bar-chart-1.png" width="100%"></p>
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<div class="sourceCode" id="cb4"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Using another color palette through `theme_reach()` and changing scale to percent</span></span>
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<span><span class="fu"><a href="reference/bar.html">bar</a></span><span class="op">(</span><span class="va">df</span>, <span class="va">island</span>,<span class="va">mean_bl</span>, <span class="va">species</span>, percent <span class="op">=</span> <span class="cn">TRUE</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>palette <span class="op">=</span> <span class="st">"artichoke_3"</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-bar-chart-2.png" width="100%"></p>
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<div class="sourceCode" id="cb5"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Not flipped, with text added, group_title, no y-axis and no bold for legend</span></span>
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<span><span class="fu"><a href="reference/bar.html">bar</a></span><span class="op">(</span><span class="va">df</span>, <span class="va">island</span>, <span class="va">mean_bl</span>, <span class="va">species</span>, group_title <span class="op">=</span> <span class="st">"Species"</span>, flip <span class="op">=</span> <span class="cn">FALSE</span>, add_text <span class="op">=</span> <span class="cn">TRUE</span>, add_text_suffix <span class="op">=</span> <span class="st">"%"</span>, percent <span class="op">=</span> <span class="cn">FALSE</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>text_font_face <span class="op">=</span> <span class="st">"plain"</span>, axis_y <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-bar-chart-3.png" width="100%"></p>
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</div>
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<div class="section level3">
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<h3 id="example-2-point-chart-already-reach-themed">Example 2: Point chart, already REACH themed<a class="anchor" aria-label="anchor" href="#example-2-point-chart-already-reach-themed"></a>
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</h3>
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<p>At this stage, <code>point_reach()</code> only supports categorical grouping colors with the <code>group</code> arg.</p>
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<div class="sourceCode" id="cb6"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Simple point chart</span></span>
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<span><span class="fu"><a href="reference/point.html">point</a></span><span class="op">(</span><span class="va">penguins</span>, <span class="va">bill_length_mm</span>, <span class="va">flipper_length_mm</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-point-chart-1.png" width="100%"></p>
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<div class="sourceCode" id="cb7"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Point chart with grouping colors, greater dot size, some transparency, reversed color palette</span></span>
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<span><span class="fu"><a href="reference/point.html">point</a></span><span class="op">(</span><span class="va">penguins</span>, <span class="va">bill_length_mm</span>, <span class="va">flipper_length_mm</span>, <span class="va">island</span>, alpha <span class="op">=</span> <span class="fl">0.6</span>, size <span class="op">=</span> <span class="fl">3</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>reverse <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
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<p><img src="reference/figures/README-example-point-chart-2.png" width="100%"></p>
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<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span></span>
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<span><span class="co"># Using another color palettes</span></span>
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<span><span class="fu"><a href="reference/point.html">point</a></span><span class="op">(</span><span class="va">penguins</span>, <span class="va">bill_length_mm</span>, <span class="va">flipper_length_mm</span>, <span class="va">island</span>, size <span class="op">=</span> <span class="fl">1.5</span>, x_title <span class="op">=</span> <span class="st">"Bill"</span>, y_title <span class="op">=</span> <span class="st">"Flipper"</span>, title <span class="op">=</span> <span class="st">"Length (mm)"</span>, theme <span class="op">=</span> <span class="fu"><a href="reference/theme_reach.html">theme_reach</a></span><span class="op">(</span>palette <span class="op">=</span> <span class="st">"artichoke_3"</span>, text_font_face <span class="op">=</span> , grid_x <span class="op">=</span> <span class="cn">T</span><span class="op">)</span><span class="op">)</span></span></code></pre></div>
|
||
<p><img src="reference/figures/README-example-point-chart-3.png" width="100%"></p>
|
||
</div>
|
||
</div>
|
||
<div class="section level2">
|
||
<h2 id="maps">Maps<a class="anchor" aria-label="anchor" href="#maps"></a>
|
||
</h2>
|
||
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
|
||
<code class="sourceCode R"><span></span>
|
||
<span><span class="co"># Add indicator layer </span></span>
|
||
<span><span class="co"># - based on "pretty" classes and title "Proportion (%)" </span></span>
|
||
<span><span class="co"># - buffer to add a 10% around the bounding box</span></span>
|
||
<span><span class="va">map</span> <span class="op"><-</span> <span class="fu"><a href="reference/add_indicator_layer.html">add_indicator_layer</a></span><span class="op">(</span></span>
|
||
<span> <span class="va">indicator_admin1</span>, </span>
|
||
<span> <span class="va">opn_dfc</span>,</span>
|
||
<span> buffer <span class="op">=</span> <span class="fl">0.1</span><span class="op">)</span> <span class="op">+</span> </span>
|
||
<span> <span class="co"># Layout - some defaults - add the map title</span></span>
|
||
<span> <span class="fu"><a href="reference/add_layout.html">add_layout</a></span><span class="op">(</span><span class="st">"% of HH that reported open defecation as sanitation facility"</span><span class="op">)</span> <span class="op">+</span> </span>
|
||
<span> <span class="co"># Admin boundaries as list of shape files (lines) and colors, line widths and labels as vectors</span></span>
|
||
<span> <span class="fu"><a href="reference/add_admin_boundaries.html">add_admin_boundaries</a></span><span class="op">(</span></span>
|
||
<span> lines <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/list.html" class="external-link">list</a></span><span class="op">(</span><span class="va">line_admin1</span>, <span class="va">border_admin0</span>, <span class="va">frontier_admin0</span><span class="op">)</span>,</span>
|
||
<span> colors <span class="op">=</span> <span class="fu"><a href="reference/cols_reach.html">cols_reach</a></span><span class="op">(</span><span class="st">"main_lt_grey"</span>, <span class="st">"dk_grey"</span>, <span class="st">"black"</span><span class="op">)</span>,</span>
|
||
<span> lwds <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0.5</span>, <span class="fl">2</span>, <span class="fl">3</span><span class="op">)</span>,</span>
|
||
<span> labels <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"Department"</span>, <span class="st">"Country"</span>, <span class="st">"Dominican Rep. frontier"</span><span class="op">)</span>,</span>
|
||
<span> title <span class="op">=</span> <span class="st">"Administrative boundaries"</span><span class="op">)</span> <span class="op">+</span> </span>
|
||
<span> <span class="co"># Add text labels - centered on admin 1 centroids</span></span>
|
||
<span> <span class="fu"><a href="reference/add_admin_labels.html">add_admin_labels</a></span><span class="op">(</span><span class="va">centroid_admin1</span>, <span class="va">ADM1_FR_UPPER</span><span class="op">)</span> <span class="op">+</span></span>
|
||
<span> <span class="co"># Add a compass</span></span>
|
||
<span> <span class="fu"><a href="reference/add_compass.html">add_compass</a></span><span class="op">(</span><span class="op">)</span> <span class="op">+</span></span>
|
||
<span> <span class="co"># Add a scale bar</span></span>
|
||
<span> <span class="fu"><a href="reference/add_scale_bar.html">add_scale_bar</a></span><span class="op">(</span><span class="op">)</span> <span class="op">+</span></span>
|
||
<span> <span class="co"># Add credits</span></span>
|
||
<span> <span class="fu"><a href="reference/add_credits.html">add_credits</a></span><span class="op">(</span><span class="st">"Admin. boundaries. : CNIGS \nCoord. system: GCS WGS 1984"</span><span class="op">)</span></span></code></pre></div>
|
||
<div class="figure">
|
||
<img src="reference/figures/README-example-map.png" alt=""><p class="caption">Once exported with <code><a href="https://rdrr.io/pkg/tmap/man/tmap_save.html" class="external-link">tmap::tmap_save()</a></code>.</p>
|
||
</div>
|
||
</div>
|
||
</div>
|
||
</main><aside class="col-md-3"><div class="links">
|
||
<h2 data-toc-skip>Links</h2>
|
||
<ul class="list-unstyled">
|
||
<li><a href="https://github.com/gnoblet/visualizeR/" class="external-link">Browse source code</a></li>
|
||
</ul>
|
||
</div>
|
||
|
||
<div class="license">
|
||
<h2 data-toc-skip>License</h2>
|
||
<ul class="list-unstyled">
|
||
<li><a href="LICENSE.html">Full license</a></li>
|
||
<li><small>GPL (>= 3)</small></li>
|
||
</ul>
|
||
</div>
|
||
|
||
|
||
<div class="citation">
|
||
<h2 data-toc-skip>Citation</h2>
|
||
<ul class="list-unstyled">
|
||
<li><a href="authors.html#citation">Citing visualizeR</a></li>
|
||
</ul>
|
||
</div>
|
||
|
||
<div class="developers">
|
||
<h2 data-toc-skip>Developers</h2>
|
||
<ul class="list-unstyled">
|
||
<li>Noblet Guillaume <br><small class="roles"> Author, maintainer </small> </li>
|
||
</ul>
|
||
</div>
|
||
|
||
|
||
|
||
</aside>
|
||
</div>
|
||
|
||
|
||
<footer><div class="pkgdown-footer-left">
|
||
<p></p>
|
||
<p>Developed by Noblet Guillaume.</p>
|
||
</div>
|
||
|
||
<div class="pkgdown-footer-right">
|
||
<p></p>
|
||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
|
||
</div>
|
||
|
||
</footer>
|
||
</div>
|
||
|
||
|
||
|
||
|
||
|
||
</body>
|
||
</html>
|